Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VQD	43439	2024-12-27	2024-01-18	2.61	3.20	2.60	3.0	0.005	0.81	0.0	0.05	16.76	0.01	2.265	3.32	0.81	1.9	98.1	0.0	0.18	0.82	0.89	4.21	3.0	0.003	0.60	0.0	0.04	16.43	0.00	2.558	4.66	2.10	1.8	98.2	0.0	0.61	0.37	0.76	0.87	4.34	5686	736	4	0	2	0	0	logfile
✔	8VQA	43436	2024-12-29	2024-01-18	3.5	3.83	3.41	3.9	0.011	1.34	0.0	0.09	9.89	0.00	2.443	0.78	0.77	2.6	96.7	0.7	0.07	0.62	0.70	3.56	3.9	0.003	0.61	0.0	0.04	12.83	0.00	2.629	3.17	0.64	3.5	96.5	0.0	0.69	1.16	0.71	0.78	3.32	9495	1290	18	0	30	0	0	logfile
✔	8RQL	19445	2024-12-28	2024-01-18	3.03	3.10	—	3.3	0.003	0.53	0.0	0.04	12.19	0.00	2.097	5.46	0.22	3.4	96.6	0.0	0.33	0.54	0.79	3.34	3.3	0.003	0.58	0.0	0.04	15.26	0.00	2.465	5.76	2.32	3.7	96.3	0.0	0.46	0.60	0.61	0.85	2.99	8646	1126	6	0	2	0	0	logfile
✔	8VQC	43438	2024-12-29	2024-01-18	3.9	4.20	3.94	4.1	0.004	0.76	0.0	0.05	19.50	0.00	1.791	14.47	0.72	7.5	92.4	0.1	-0.22	0.60	0.78	0.99	4.1	0.003	0.73	0.0	0.04	16.23	0.00	2.453	10.91	3.61	6.9	93.0	0.1	-0.06	0.41	0.59	0.78	1.00	10954	1352	8	0	17	0	0	logfile
✔	8XXQ	38758	2024-12-31	2024-01-18	2.75	3.85	2.87	3.4	0.002	0.48	0.0	0.04	8.14	0.00	2.142	4.76	0.43	1.9	98.0	0.1	-0.18	0.89	0.82	2.98	3.4	0.004	0.68	0.0	0.05	12.80	0.00	2.569	7.54	1.34	3.1	96.9	0.0	1.32	1.03	0.88	0.86	2.96	15172	1996	4	0	0	0	0	logfile
✔	8RQ4	19433	2024-12-29	2024-01-17	3.45	3.84	3.57	3.8	0.007	0.72	0.0	0.05	18.58	0.00	2.209	11.02	0.64	4.5	95.5	0.0	1.28	0.61	0.78	1.01	3.8	0.003	0.60	0.0	0.04	18.48	0.00	2.516	8.15	3.71	3.9	96.1	0.0	1.88	0.75	0.64	0.84	1.09	11210	1402	2	0	3	0	0	logfile
✔	8RQ3	19431	2024-12-29	2024-01-17	3.21	3.47	3.25	3.5	0.009	0.81	0.0	0.05	14.58	0.00	2.149	9.58	0.00	6.2	93.8	0.0	-0.39	0.61	0.85	2.21	3.5	0.003	0.58	0.0	0.04	16.43	0.00	2.521	5.42	1.81	4.2	95.8	0.0	1.69	0.73	0.54	0.82	1.16	11375	1432	1	0	0	0	0	logfile
✔	8VPP	43412	2024-12-29	2024-01-16	2.9	3.20	2.97	3.2	0.004	0.65	0.0	0.14	19.24	0.01	1.832	47.41	4.30	4.9	94.8	0.3	0.42	0.54	0.81	2.12	3.2	0.004	1.03	1.0	0.07	18.96	0.00	2.166	9.66	3.06	3.8	96.0	0.2	0.97	1.36	0.59	0.84	2.50	9930	1264	3	0	1	2	0	logfile
✔	8XWQ	38741	2024-12-28	2024-01-16	4.6	4.22	4.62	4.1	0.003	0.55	0.0	0.04	12.78	0.00	2.145	14.35	7.98	3.6	96.4	0.0	-0.12	0.72	0.74	—	4.1	0.003	0.75	0.0	0.05	12.49	0.01	2.413	14.29	0.10	4.0	96.0	0.0	-0.57	1.87	0.73	0.75	—	9076	1163	6	0	0	0	0	logfile
✔	8XWP	38740	2024-12-28	2024-01-16	3.21	3.22	3.19	3.4	0.002	0.47	0.0	0.04	12.28	0.00	2.144	8.97	5.56	3.9	96.1	0.0	-0.38	0.67	0.77	1.87	3.4	0.004	0.69	0.0	0.04	15.17	0.00	2.324	11.24	6.06	4.9	95.1	0.0	-0.38	1.75	0.66	0.77	1.49	9076	1163	6	0	0	0	0	logfile
✔	8VoW	43393	2024-12-28	2024-01-16	3.44	3.70	3.48	3.7	0.003	0.55	0.0	0.04	15.06	0.00	1.916	8.24	0.21	5.9	94.1	0.0	1.32	0.69	0.80	1.34	3.7	0.005	0.93	1.0	0.04	16.83	0.00	1.862	8.13	1.85	6.3	93.7	0.0	1.32	0.31	0.70	0.83	1.26	8917	1131	4	0	5	0	0	logfile
✔	8VPQ	43413	2024-12-30	2024-01-16	3.3	3.57	3.33	3.6	0.004	0.79	0.0	0.04	9.42	0.00	2.036	10.44	0.00	13.8	83.2	3.0	-4.85	0.65	0.77	3.77	3.6	0.004	0.68	0.0	0.04	14.01	0.00	2.039	5.95	2.05	6.9	92.7	0.4	-1.36	0.55	0.75	0.85	3.08	12090	1509	6	0	2	0	0	logfile
✔	8VPA	43405	2024-12-28	2024-01-16	3.11	3.39	3.19	3.4	0.003	0.52	0.0	0.04	14.44	0.00	2.224	4.91	0.00	2.8	97.2	0.0	2.35	0.61	0.84	2.93	3.4	0.003	0.53	0.0	0.04	15.89	0.00	2.468	4.91	1.89	2.9	97.1	0.0	2.29	0.23	0.62	0.85	2.67	8658	1098	4	0	2	0	0	logfile
✔	8VoV	43392	2024-12-30	2024-01-16	3.6	3.53	1.87	3.7	0.012	0.88	0.0	0.04	18.13	0.00	1.985	4.60	0.07	4.2	95.8	0.0	1.83	0.68	0.84	1.09	3.7	0.003	0.57	0.0	0.04	17.71	0.00	2.482	2.77	1.57	3.2	96.8	0.0	1.98	0.39	0.68	0.84	1.11	13998	1734	12	0	12	0	0	logfile
✔	8VPB	43406	2024-12-29	2024-01-16	3.23	3.75	3.50	3.7	0.002	0.54	0.0	0.04	15.78	0.00	2.041	8.08	0.17	4.3	95.7	0.0	0.83	0.59	0.77	1.29	3.7	0.003	0.61	0.0	0.04	16.22	0.00	2.029	6.37	3.36	4.4	95.6	0.0	1.01	0.28	0.58	0.76	0.97	10928	1394	4	0	4	0	0	logfile
✔	8XVM	38690	2024-12-28	2024-01-15	2.77	3.36	2.94	3.2	0.004	0.58	0.0	0.05	15.17	0.00	0.802	10.18	0.00	6.8	93.2	0.0	0.17	0.77	0.80	1.85	3.1	0.013	1.04	7.0	0.05	15.53	0.01	1.406	10.12	1.40	5.9	94.1	0.0	-0.06	0.59	0.77	0.79	1.77	39852	4872	24	0	81	0	0	logfile
✔	8XW4	38730	2024-12-27	2024-01-15	3.84	4.08	3.72	4.0	0.006	0.87	0.0	0.05	14.64	0.00	1.751	14.90	0.00	10.8	89.2	0.0	-0.84	0.54	0.78	1.09	4.1	0.003	0.78	0.0	0.04	16.95	0.00	2.517	10.76	3.81	8.0	92.0	0.0	0.17	0.57	0.54	0.77	0.82	5027	619	1	0	0	0	0	logfile
✔	8XVE	38702	2024-12-28	2024-01-15	3.0	2.32	3.07	2.1	0.004	0.63	0.0	0.04	16.63	0.01	2.050	7.99	0.65	2.0	98.0	0.0	0.79	0.77	0.78	2.64	2.1	0.004	0.66	0.0	0.04	17.68	0.00	2.446	6.40	4.73	2.6	97.4	0.0	1.06	0.43	0.77	0.79	2.17	8524	1078	6	0	0	0	0	logfile
✔	8XW1	38727	2024-12-27	2024-01-15	4.49	4.73	4.24	4.6	0.005	0.82	0.0	0.05	14.01	0.01	2.139	20.22	0.19	7.2	92.8	0.0	-0.07	0.59	0.82	—	4.6	0.003	0.70	0.0	0.04	14.05	0.00	2.321	11.29	0.00	5.6	94.4	0.0	0.84	1.08	0.57	0.81	—	5082	634	1	0	0	0	0	logfile
✔	8XVH	38704	2024-12-28	2024-01-15	3.26	2.34	3.37	2.1	0.002	0.57	0.0	0.04	15.34	0.00	2.140	6.39	0.21	2.3	97.7	0.0	-0.56	0.74	0.73	1.62	2.1	0.003	0.66	0.0	0.04	16.17	0.00	2.493	6.62	3.74	2.6	97.4	0.0	0.54	0.40	0.73	0.73	1.70	8544	1080	6	0	0	0	0	logfile

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