Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XW1	38727	2024-12-27	2024-01-15	4.49	4.73	4.24	4.6	0.005	0.82	0.0	0.05	14.01	0.01	2.139	20.22	0.19	7.2	92.8	0.0	-0.07	0.59	0.82	—	4.6	0.003	0.70	0.0	0.04	14.05	0.00	2.321	11.29	0.00	5.6	94.4	0.0	0.84	1.08	0.57	0.81	—	5082	634	1	0	0	0	0	logfile
✔	8XVY	38723	2024-12-29	2024-01-15	3.71	3.97	3.78	3.9	0.004	0.81	0.0	0.05	14.04	0.01	2.128	15.85	0.17	9.8	90.2	0.0	-0.57	0.64	0.80	1.49	3.9	0.003	0.76	0.0	0.04	16.36	0.00	2.504	11.60	2.79	7.9	92.1	0.0	0.38	0.56	0.64	0.79	1.19	10923	1361	2	0	0	0	0	logfile
✔	8XVi	38705	2024-12-28	2024-01-15	3.32	2.33	3.41	2.2	0.004	0.62	0.0	0.04	16.87	0.00	2.200	9.83	0.43	5.0	95.0	0.0	-0.52	0.73	0.72	0.95	2.2	0.004	0.63	0.0	0.04	17.20	0.00	2.527	7.78	4.05	5.4	94.6	0.0	0.09	0.26	0.72	0.71	0.63	8587	1084	6	0	0	0	0	logfile
✔	8XW2	38728	2024-12-29	2024-01-15	3.59	3.94	3.75	3.9	0.005	0.76	0.0	0.05	13.68	0.01	2.169	11.00	0.00	5.2	94.8	0.0	0.69	0.65	0.81	2.45	3.9	0.003	0.70	0.0	0.04	16.08	0.00	2.326	8.10	0.85	4.0	96.0	0.0	1.14	0.47	0.65	0.81	1.73	10150	1268	2	0	0	0	0	logfile
✔	8XW4	38730	2024-12-27	2024-01-15	3.84	4.08	3.72	4.0	0.006	0.87	0.0	0.05	14.64	0.00	1.751	14.90	0.00	10.8	89.2	0.0	-0.84	0.54	0.78	1.09	4.1	0.003	0.78	0.0	0.04	16.95	0.00	2.517	10.76	3.81	8.0	92.0	0.0	0.17	0.57	0.54	0.77	0.82	5027	619	1	0	0	0	0	logfile
✔	8XW0	38725	2024-12-29	2024-01-15	3.11	3.37	2.97	3.4	0.005	0.91	0.0	0.05	19.55	0.01	2.126	10.61	0.83	9.7	90.3	0.0	-0.53	0.60	0.81	2.07	3.4	0.003	0.62	0.0	0.04	17.70	0.00	2.398	7.39	1.41	7.8	92.2	0.0	0.43	1.55	0.65	0.84	1.50	11320	1392	4	0	4	0	0	logfile
✔	8XVH	38704	2024-12-28	2024-01-15	3.26	2.34	3.37	2.1	0.002	0.57	0.0	0.04	15.34	0.00	2.140	6.39	0.21	2.3	97.7	0.0	-0.56	0.74	0.73	1.62	2.1	0.003	0.66	0.0	0.04	16.17	0.00	2.493	6.62	3.74	2.6	97.4	0.0	0.54	0.40	0.73	0.73	1.70	8544	1080	6	0	0	0	0	logfile
✔	8XVM	38690	2024-12-28	2024-01-15	2.77	3.36	2.94	3.2	0.004	0.58	0.0	0.05	15.17	0.00	0.802	10.18	0.00	6.8	93.2	0.0	0.17	0.77	0.80	1.85	3.1	0.013	1.04	7.0	0.05	15.53	0.01	1.406	10.12	1.40	5.9	94.1	0.0	-0.06	0.59	0.77	0.79	1.77	39852	4872	24	0	81	0	0	logfile
✔	8XV1	38689	2024-12-29	2024-01-14	3.05	3.37	3.22	3.4	0.003	0.57	0.0	0.05	15.77	0.00	2.244	3.39	0.00	4.7	95.3	0.0	1.11	0.48	0.66	2.62	3.3	0.003	0.57	0.0	0.04	15.55	0.00	2.548	3.16	1.58	4.9	94.9	0.1	0.72	1.81	0.63	0.82	2.86	6652	794	7	0	15	0	0	logfile
✔	8XV2	38691	2024-12-27	2024-01-14	3.7	2.50	3.71	2.8	0.009	0.99	0.0	0.06	9.84	0.01	2.318	2.55	0.00	5.2	94.8	0.0	-3.54	0.65	0.73	3.48	2.2	0.004	0.72	0.0	0.05	15.18	0.00	2.413	11.15	2.70	3.4	96.6	0.0	1.64	1.25	0.66	0.73	2.59	3128	388	2	0	1	0	0	logfile
✔	8XV5	38692	2024-12-27	2024-01-14	3.7	2.43	3.72	2.9	0.005	0.90	0.0	0.05	9.70	0.01	2.280	3.19	0.00	4.4	95.6	0.0	-3.67	0.68	0.71	3.33	2.1	0.011	1.35	1.0	0.05	14.94	0.01	2.444	11.81	3.30	3.1	96.9	0.0	1.11	0.67	0.69	0.72	3.28	3122	388	2	0	1	0	0	logfile
✔	8XVB	38695	2024-12-31	2024-01-14	3.4	4.28	3.41	3.8	0.002	0.49	0.0	0.04	18.53	0.00	2.248	10.17	0.00	4.1	95.9	0.0	1.66	0.56	0.68	1.17	3.9	0.003	0.62	0.0	0.04	18.94	0.00	2.514	10.56	0.79	3.5	96.5	0.0	2.27	1.32	0.61	0.88	1.31	16728	1968	18	48	8	0	0	logfile
✔	8XV9	38693	2024-12-27	2024-01-14	3.8	2.50	3.79	2.0	0.008	0.94	0.0	0.05	12.31	0.01	2.402	2.22	0.00	5.5	94.5	0.0	-3.53	0.58	0.61	1.87	2.9	0.004	0.76	0.0	0.04	16.81	0.00	2.534	11.56	3.00	4.4	95.6	0.0	1.04	1.33	0.60	0.64	1.04	3147	388	2	0	1	0	0	logfile
✔	8XV0	38688	2024-12-29	2024-01-14	3.0	3.23	3.06	3.3	0.003	0.56	0.0	0.05	14.70	0.00	2.242	3.63	0.00	4.2	95.8	0.0	1.12	0.48	0.64	2.55	3.2	0.003	0.59	0.0	0.04	15.28	0.00	2.529	4.79	1.44	4.3	95.7	0.0	1.17	0.57	0.67	0.81	2.74	6633	790	8	0	16	0	0	logfile
✔	8XUY	38686	2024-12-26	2024-01-14	3.14	3.59	3.30	3.3	0.004	0.61	0.0	0.05	15.40	0.00	2.063	9.95	0.00	6.7	93.3	0.0	-1.39	0.79	0.83	1.83	3.3	0.006	0.70	0.0	0.05	15.63	0.00	2.346	9.34	1.63	7.7	92.3	0.0	-1.08	0.52	0.77	0.81	1.72	34827	4266	24	0	74	0	0	logfile
✔	8XUo	38679	2024-12-30	2024-01-13	2.84	3.39	2.97	3.3	0.004	0.83	0.0	0.30	20.56	0.00	1.970	8.77	2.71	2.8	97.1	0.1	0.14	0.64	0.71	1.90	3.3	0.004	0.75	0.0	0.04	19.17	0.01	2.392	6.90	3.15	3.9	96.1	0.0	0.09	1.17	0.65	0.74	1.87	12254	1504	4	0	4	0	0	logfile
✔	8RoZ	19408	2024-12-27	2024-01-12	2.7	2.95	2.73	3.0	0.005	0.56	0.0	0.04	17.46	0.00	2.219	5.09	1.06	1.9	98.1	0.0	1.04	0.64	0.85	2.73	3.0	0.004	0.64	0.0	0.04	18.20	0.01	2.530	4.68	2.72	1.6	98.4	0.0	1.55	1.24	0.69	0.87	2.75	6079	751	3	0	0	0	0	logfile
✔	8VLY	43348	2024-12-28	2024-01-12	3.61	3.88	3.58	3.8	0.004	0.55	0.0	0.04	15.20	0.00	2.180	8.34	0.38	4.6	95.4	0.0	1.00	0.64	0.86	1.88	3.8	0.004	0.57	0.0	0.04	15.97	0.00	2.609	6.39	3.75	4.9	95.1	0.0	0.93	0.87	0.65	0.86	1.82	7755	992	5	0	7	0	0	logfile
✔	8VLV	43345	2024-12-28	2024-01-12	3.49	3.80	3.51	3.8	0.003	0.56	0.0	0.04	15.45	0.00	2.192	10.08	0.12	5.3	94.7	0.0	0.75	0.63	0.83	2.72	3.8	0.003	0.57	0.0	0.04	15.19	0.00	2.523	7.61	1.75	5.1	94.9	0.0	0.98	0.24	0.69	0.86	1.97	8265	1085	5	0	9	0	0	logfile
✔	8RoY	19407	2024-12-28	2024-01-12	3.1	4.02	3.16	3.8	0.003	0.56	0.0	0.04	14.45	0.02	2.346	2.23	0.40	4.8	95.2	0.0	-1.39	0.78	0.81	3.13	3.8	0.002	0.59	0.0	0.04	14.85	0.00	2.461	4.08	3.08	4.3	95.7	0.0	-0.76	1.01	0.79	0.82	2.74	8294	1174	4	0	1	0	0	logfile

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