Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VLY	43348	2024-12-28	2024-01-12	3.61	3.88	3.58	3.8	0.004	0.55	0.0	0.04	15.20	0.00	2.180	8.34	0.38	4.6	95.4	0.0	1.00	0.64	0.86	1.88	3.8	0.004	0.57	0.0	0.04	15.97	0.00	2.609	6.39	3.75	4.9	95.1	0.0	0.93	0.87	0.65	0.86	1.82	7755	992	5	0	7	0	0	logfile
✔	8XTW	38651	2024-12-27	2024-01-12	3.3	3.50	3.27	3.6	0.004	0.80	1.0	0.05	15.82	0.01	2.302	5.25	0.33	6.4	93.6	0.0	0.29	0.47	0.79	1.82	3.6	0.003	0.61	0.0	0.04	16.30	0.01	2.571	2.54	3.30	3.7	96.3	0.0	1.86	0.37	0.54	0.83	1.32	2886	382	2	0	1	0	0	logfile
✔	8XTX	38652	2024-12-27	2024-01-12	3.4	3.67	3.56	3.9	0.004	0.77	0.0	0.04	17.36	0.01	2.218	4.59	0.66	7.7	92.3	0.0	0.04	0.46	0.82	0.99	3.9	0.003	0.63	0.0	0.04	17.46	0.01	2.577	4.59	5.28	6.6	93.4	0.0	0.83	0.38	0.45	0.81	1.01	2876	382	1	0	0	0	0	logfile
✔	8RNU	19395	2024-12-29	2024-01-11	3.4	5.41	2.49	3.9	0.010	1.04	0.0	0.05	17.19	0.01	2.104	28.22	0.32	10.1	89.9	0.0	-2.17	0.62	0.30	0.31	3.9	0.004	0.78	0.0	0.05	17.94	0.01	2.398	25.78	3.69	10.5	89.5	0.0	-2.30	0.67	0.63	0.33	0.49	10848	1320	12	0	0	0	0	logfile
✔	8VKJ	43319	2024-12-28	2024-01-09	2.92	3.19	2.94	3.2	0.005	0.63	0.0	0.04	16.09	0.01	2.201	9.71	0.34	4.5	95.4	0.1	0.61	0.62	0.86	4.03	3.2	0.003	0.56	0.0	0.04	15.58	0.00	2.513	7.72	1.60	4.0	95.9	0.1	0.81	0.84	0.65	0.87	3.39	8622	1089	5	0	9	0	0	logfile
✔	8XSi	38619	2024-12-27	2024-01-09	2.1	2.13	2.10	1.9	0.003	0.60	0.0	0.05	12.12	0.00	2.136	4.88	0.55	6.4	93.4	0.2	-0.70	0.80	0.79	4.65	1.9	0.003	0.61	0.0	0.05	14.17	0.00	2.536	3.66	2.20	5.9	93.9	0.2	-0.85	0.89	0.83	0.82	4.68	3354	429	4	0	1	0	0	logfile
✔	8XSF	38618	2024-12-31	2024-01-09	2.16	2.17	2.18	1.8	0.003	0.59	0.0	0.04	12.92	0.01	2.140	6.66	0.19	3.5	96.4	0.1	0.99	0.73	0.69	2.89	1.9	0.004	0.69	1.0	0.05	15.91	0.01	2.010	6.40	2.54	3.3	96.6	0.1	0.51	1.09	0.79	0.77	2.79	9736	1221	6	0	5	0	0	logfile
✔	8XSE	38617	2024-12-30	2024-01-09	2.5	2.23	2.61	2.0	0.004	0.64	0.0	0.04	17.93	0.01	2.174	6.64	5.41	5.6	94.3	0.1	-0.52	0.79	0.79	3.68	2.0	0.003	0.59	0.0	0.04	17.62	0.00	2.471	4.51	2.54	5.1	94.8	0.1	0.00	0.29	0.82	0.82	3.69	8120	1065	6	0	1	0	0	logfile
✔	8RN8	19390	2024-12-28	2024-01-09	2.92	3.12	2.96	3.1	0.003	0.50	0.0	0.04	17.76	0.00	1.884	6.27	1.95	3.6	96.3	0.1	0.59	0.67	0.81	2.99	3.1	0.004	0.68	1.0	0.04	17.92	0.00	2.066	5.27	1.77	3.9	96.0	0.1	0.39	0.93	0.68	0.83	2.99	51366	3234	9	0	5	0	25704	logfile
✔	8XSJ	38620	2024-12-31	2024-01-09	2.61	2.30	2.66	2.1	0.003	0.63	0.0	0.04	13.66	0.01	2.001	6.19	0.10	4.4	95.4	0.2	-0.03	0.75	0.74	3.16	2.1	0.003	0.59	0.0	0.04	15.49	0.01	2.330	5.04	1.05	3.7	96.1	0.2	0.19	0.32	0.79	0.78	2.43	9740	1215	7	0	9	0	0	logfile
✔	8XRQ	38610	2024-12-27	2024-01-08	4.19	2.23	3.70	1.5	0.006	0.87	0.0	0.05	15.75	0.01	2.322	6.69	0.86	11.0	88.8	0.2	-3.50	0.50	0.46	—	1.4	0.003	0.78	0.0	0.05	13.36	0.01	2.438	10.82	0.00	13.7	86.0	0.2	-3.50	0.94	0.53	0.50	—	3210	407	3	0	0	0	0	logfile
✔	8XS3	38613	2024-12-27	2024-01-08	3.46	4.59	3.46	3.9	0.005	0.77	0.0	0.05	13.19	0.02	2.090	16.27	0.00	5.0	95.0	0.0	-3.00	0.91	0.83	2.30	3.9	0.003	0.65	0.0	0.04	14.55	0.00	2.488	10.11	1.49	3.5	96.5	0.0	-0.56	1.08	0.91	0.84	2.48	4118	535	5	0	3	0	0	logfile
✔	8XS0	38612	2024-12-29	2024-01-08	3.89	4.15	4.00	4.1	0.004	0.84	0.0	0.05	12.99	0.01	2.158	13.17	0.00	13.6	86.3	0.1	-0.93	0.67	0.80	2.30	4.0	0.003	0.79	0.0	0.04	15.31	0.01	2.429	9.89	2.86	11.1	88.7	0.1	-0.17	0.53	0.67	0.79	1.74	10353	1388	2	0	0	0	0	logfile
✔	8XRY	38611	2024-12-29	2024-01-08	3.84	3.84	3.74	3.8	0.004	0.74	0.0	0.04	12.99	0.00	2.253	10.68	0.00	9.3	90.5	0.1	-0.26	0.68	0.81	2.38	3.8	0.003	0.70	0.0	0.04	15.37	0.00	2.492	8.37	2.42	7.3	92.7	0.0	0.35	0.41	0.69	0.81	1.13	10616	1392	2	0	0	0	0	logfile
✔	8XS4	38614	2024-12-29	2024-01-08	3.23	3.36	3.21	3.3	0.004	0.80	0.0	0.05	13.90	0.01	2.149	11.69	0.00	7.1	92.9	0.0	-0.41	0.68	0.79	2.51	3.3	0.004	0.72	0.0	0.04	16.06	0.01	2.479	6.85	1.02	6.4	93.6	0.0	0.65	1.56	0.68	0.81	2.35	11132	1392	2	0	0	0	0	logfile
✔	8XS5	38615	2024-12-28	2024-01-08	3.33	3.40	3.21	3.3	0.011	0.88	0.0	0.05	13.49	0.01	2.081	9.41	0.00	6.7	93.2	0.1	-0.34	0.70	0.85	2.61	3.4	0.003	0.61	0.0	0.04	15.40	0.01	2.531	4.53	0.89	5.0	94.9	0.1	1.46	0.42	0.69	0.84	1.72	8705	1088	2	0	0	0	0	logfile
✔	8VJL	43288	2024-12-30	2024-01-07	3.5	3.83	3.70	3.8	0.008	0.79	0.0	0.04	22.66	0.00	2.215	7.08	0.00	5.8	93.7	0.5	0.73	0.68	0.83	2.39	3.8	0.003	0.61	0.0	0.04	16.79	0.00	2.474	4.67	1.70	6.1	93.4	0.5	0.73	0.97	0.67	0.85	1.83	13334	1616	12	0	6	0	0	logfile
✔	8VJM	43289	2024-12-27	2024-01-07	4.0	4.19	4.05	4.2	0.008	0.82	0.0	0.04	22.67	0.01	2.235	8.60	0.29	6.0	93.8	0.2	0.48	0.66	0.82	—	4.2	0.004	0.72	0.0	0.04	17.58	0.00	2.433	10.37	2.95	6.9	93.0	0.1	0.58	0.98	0.67	0.84	—	6667	808	5	0	3	0	0	logfile
✔	8VJC	43280	2024-12-31	2024-01-06	3.8	4.21	3.77	3.9	0.003	0.65	0.0	0.05	15.46	0.00	2.157	15.56	0.51	8.2	91.6	0.2	-1.46	0.85	0.80	1.76	3.9	0.005	0.68	0.0	0.05	16.21	0.00	2.429	11.55	2.75	8.5	91.3	0.2	-1.58	0.36	0.85	0.82	1.85	13927	1726	5	0	0	0	0	logfile
✔	8XQT	38588	2024-12-28	2024-01-05	2.94	2.26	3.07	2.0	0.003	0.59	0.0	0.04	15.34	0.00	2.168	16.18	0.21	3.1	96.9	0.0	0.33	0.74	0.74	2.16	2.0	0.004	0.64	0.0	0.04	16.13	0.00	2.511	10.95	3.08	2.8	97.2	0.0	0.25	1.52	0.76	0.76	2.12	8897	1125	6	0	2	0	0	logfile

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