Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6MRW	9214	2024-12-29	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.003	0.50	0.0	0.03	11.60	0.00	2.511	5.34	0.00	1.9	98.1	0.0	5.72	0.67	0.83	0.87	—	31346	3990	14	0	0	0	0	logfile
✔	6MRU	9213	2024-12-28	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.50	0.0	0.03	13.42	0.00	2.492	2.66	1.07	1.2	98.8	0.0	5.28	3.08	0.75	0.87	1.90	29107	3705	13	0	0	0	0	logfile
✔	6iJZ	9682	2024-12-29	2018-10-12	3.68	3.76	—	3.7	0.008	1.11	0.0	0.06	10.64	0.01	2.000	4.54	0.69	10.9	88.8	0.3	-5.03	0.57	0.80	2.19	3.7	0.003	0.74	0.0	0.04	15.77	0.00	2.439	9.67	3.19	9.7	90.3	0.0	-0.61	2.69	0.59	0.81	1.97	10964	1366	2	0	0	0	0	logfile
✔	6HV9	0288	2024-12-27	2018-10-10	4.98	4.88	—	4.5	0.012	1.86	14.0	0.09	12.30	0.01	1.447	9.25	0.49	10.9	88.8	0.3	-4.02	0.78	0.66	—	4.5	0.009	0.90	0.0	0.05	13.59	0.01	2.306	17.86	0.00	10.5	89.4	0.1	-2.16	1.66	0.79	0.69	—	47617	6040	18	49	4	0	0	logfile
✔	6HV8	0287	2024-12-28	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	8.97	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.85	0.0	0.05	13.10	0.00	2.426	10.12	0.00	12.0	88.0	0.0	-2.47	1.46	0.74	0.71	—	9206	1184	3	0	2	0	0	logfile
✔	6HUD	0274	2024-12-27	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.020	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.005	0.84	0.0	0.05	13.46	0.00	2.547	16.30	1.52	10.7	89.3	0.0	-5.00	1.48	0.57	0.79	—	2905	385	5	0	0	0	0	logfile
✔	6MPB	9188	2024-12-29	2018-10-05	3.84	4.03	4.02	4.0	0.005	1.09	0.0	0.06	10.55	0.01	2.338	3.82	0.00	8.9	91.1	0.0	-5.90	0.71	0.78	2.00	4.0	0.003	0.87	0.0	0.04	15.41	0.00	2.506	10.08	4.69	5.9	94.1	0.0	0.15	1.48	0.72	0.83	1.72	9969	1341	9	0	3	0	0	logfile
✔	6HU7	0273	2024-12-27	2018-10-05	2.8	2.82	2.83	2.9	0.008	0.78	0.0	0.05	9.81	0.01	2.130	10.26	0.36	2.7	96.8	0.5	-3.47	0.49	0.84	4.61	2.9	0.003	0.63	0.0	0.04	15.23	0.00	2.484	7.08	1.28	2.0	97.6	0.3	2.94	1.60	0.54	0.87	3.67	4890	609	7	0	0	0	0	logfile
✔	6MP6	9187	2024-12-29	2018-10-05	3.54	4.04	3.81	4.0	0.006	1.10	0.0	0.06	10.39	0.01	2.439	3.39	0.00	7.9	92.1	0.0	-6.02	0.70	0.81	2.60	4.0	0.003	0.88	0.0	0.04	15.90	0.00	2.499	8.29	4.32	5.9	94.1	0.0	0.31	1.44	0.67	0.82	1.20	9939	1338	6	0	3	0	0	logfile
✔	6MLU	9146	2024-12-27	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.040	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.06	0.0	0.06	17.73	0.01	2.457	23.06	6.94	11.9	88.1	0.0	-2.24	2.58	0.44	0.78	—	2516	306	2	0	0	0	0	logfile
✔	6HS7	0264	2024-12-28	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.39	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.003	0.74	0.0	0.04	14.09	0.00	2.450	9.13	0.04	8.2	91.8	0.0	-2.20	0.92	0.80	0.72	—	52890	6905	25	0	0	0	0	logfile
✔	6MLM	9139	2024-12-31	2018-09-27	3.5	3.57	3.71	3.5	0.013	1.31	0.0	0.06	11.42	0.01	2.019	2.53	0.33	3.0	96.7	0.3	0.37	0.72	0.74	2.71	3.5	0.005	0.77	0.0	0.05	16.06	0.01	2.394	13.72	2.75	6.5	93.5	0.0	-1.28	2.22	0.72	0.75	2.40	16701	2121	18	0	9	0	0	logfile
✔	6HRF	0260	2024-12-27	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.004	0.82	0.0	0.05	16.44	0.00	2.555	5.45	1.99	4.4	95.6	0.0	-3.40	4.59	0.36	0.77	3.42	3522	462	6	0	0	0	0	logfile
✔	6HRE	0259	2024-12-27	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.01	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	3.3	0.005	0.84	0.0	0.05	17.20	0.00	2.598	6.15	2.99	8.2	91.8	0.0	-3.49	0.75	0.29	0.78	3.74	3522	462	6	0	0	0	0	logfile
✔	6MJZ	9135	2024-12-29	2018-09-24	4.3	4.22	—	4.1	0.007	1.01	0.0	0.05	11.75	0.01	2.041	7.58	0.38	14.4	85.3	0.3	-5.04	0.69	0.56	—	4.1	0.003	0.81	0.0	0.05	13.33	0.00	2.436	11.85	0.00	10.4	89.6	0.0	-2.69	1.42	0.80	0.72	—	11436	1477	5	0	0	0	0	logfile
✔	6HQE	0252	2024-12-28	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.005	0.83	0.0	0.04	12.09	0.01	2.495	18.08	0.00	4.4	95.6	0.0	1.46	0.97	0.65	0.85	—	9360	1196	52	0	0	0	0	logfile
✔	6Mi7	9125	2024-12-28	2018-09-19	4.2	4.24	—	4.2	0.006	1.19	0.0	0.06	12.82	0.01	2.053	7.37	0.38	9.3	90.7	0.0	-5.97	0.58	0.80	—	4.2	0.003	0.80	0.0	0.04	13.87	0.00	2.369	8.71	0.00	6.1	93.9	0.0	-1.86	1.96	0.59	0.80	—	7285	931	6	0	1	0	0	logfile
✔	6MGV	9112	2024-12-29	2018-09-15	3.1	3.21	3.10	3.2	0.018	1.44	0.0	0.08	9.73	0.01	2.082	2.85	0.00	3.4	96.5	0.2	-0.38	0.70	0.83	4.59	3.2	0.003	0.62	0.0	0.04	14.22	0.00	2.527	5.79	1.70	3.2	96.8	0.0	1.64	2.11	0.65	0.82	2.63	10150	1268	2	0	0	0	0	logfile
✔	6HN4	0246	2024-12-27	2018-09-14	4.2	4.43	—	4.1	0.007	1.50	2.0	0.07	9.90	0.01	2.187	6.18	0.00	6.9	91.4	1.8	-2.18	0.73	0.70	—	4.2	0.004	0.72	0.0	0.05	11.56	0.00	2.524	9.67	0.00	7.7	92.3	0.0	-0.32	1.13	0.76	0.78	—	5702	700	3	0	6	0	0	logfile
✔	6HN5	0247	2024-12-28	2018-09-14	3.2	3.48	—	3.3	0.012	1.20	0.0	0.07	10.56	0.01	2.281	7.43	0.12	10.8	89.2	0.0	-3.94	0.76	0.77	3.25	3.3	0.004	0.74	0.0	0.05	13.19	0.00	2.428	8.86	1.62	7.4	92.6	0.0	-2.38	0.75	0.78	0.80	2.44	7869	953	7	0	11	0	0	logfile

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