Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HJR	0237	2024-12-30	2018-09-04	4.2	4.57	4.24	4.3	0.009	1.13	0.0	0.07	13.66	0.01	2.200	6.58	0.70	10.6	89.2	0.2	-3.38	0.84	0.88	—	4.3	0.003	0.65	0.0	0.04	12.17	0.00	2.372	6.91	0.00	7.3	92.5	0.1	-0.96	0.59	0.83	0.87	—	12579	1578	19	0	31	0	0	logfile
✔	6MDP	9103	2024-12-26	2018-09-04	3.8	5.39	—	4.1	0.009	1.42	0.0	0.17	13.12	0.01	2.016	5.27	0.33	2.4	97.5	0.1	-3.57	0.80	0.67	0.10	4.2	0.003	0.83	0.0	0.15	14.09	0.00	2.340	11.94	0.83	7.7	92.3	0.0	-1.57	1.52	0.89	0.85	0.31	45210	2832	13	0	11	0	22777	logfile
✔	6MCC	9067	2024-12-31	2018-08-31	3.9	4.31	—	4.2	0.006	1.04	0.0	0.15	17.84	0.01	2.290	5.94	1.08	8.5	91.5	0.0	-4.52	0.79	0.81	1.44	4.2	0.004	0.75	0.0	0.04	18.49	0.00	1.827	10.98	3.23	5.6	94.4	0.0	-1.21	0.62	0.80	0.81	1.37	14175	1494	3	115	1	0	0	logfile
✔	6MCB	9066	2024-12-31	2018-08-31	3.4	3.80	—	3.7	0.010	1.14	0.0	0.06	17.61	0.01	2.253	5.63	0.65	7.2	92.7	0.1	-4.48	0.76	0.81	2.85	3.7	0.003	0.68	0.0	0.04	18.77	0.00	2.406	9.02	2.20	4.5	95.4	0.1	-0.78	1.05	0.76	0.82	1.97	14187	1487	3	115	1	0	0	logfile
✔	6HiN	0225	2024-12-30	2018-08-30	4.1	4.24	—	4.2	0.010	1.21	0.0	0.07	12.35	0.01	2.367	6.61	0.32	1.5	98.5	0.0	-4.98	0.81	0.83	—	4.1	0.004	0.78	0.0	0.05	11.80	0.00	2.461	12.24	0.00	4.1	95.9	0.0	-2.52	0.70	0.82	0.83	—	14220	1675	20	0	30	0	0	logfile
✔	6Hio	0226	2024-12-31	2018-08-30	4.2	4.49	—	4.2	0.010	1.17	0.0	0.06	12.20	0.01	2.185	8.32	0.29	1.9	98.1	0.0	-3.81	0.89	0.85	—	4.2	0.003	0.66	0.0	0.04	11.21	0.00	2.314	8.85	0.17	2.4	97.6	0.0	-0.68	0.67	0.88	0.84	—	16085	1925	20	0	30	0	0	logfile
✔	6HiQ	0227	2024-12-31	2018-08-30	3.2	3.35	—	3.3	0.007	1.08	0.0	0.06	10.85	0.01	2.319	4.20	0.29	1.6	98.4	0.0	-4.97	0.82	0.84	3.78	3.3	0.003	0.65	0.0	0.04	13.41	0.00	2.528	5.08	2.43	3.2	96.8	0.0	0.05	1.29	0.83	0.87	3.15	16110	1925	20	0	30	0	0	logfile
✔	6HiS	0228	2024-12-31	2018-08-30	4.5	4.60	—	4.5	0.011	1.57	0.0	0.08	14.28	0.01	2.228	16.80	0.29	4.9	95.1	0.0	-2.60	0.76	0.77	—	4.5	0.003	0.73	0.0	0.05	12.60	0.00	2.029	10.64	0.00	9.0	91.0	0.0	-1.18	0.84	0.76	0.77	—	16240	1935	25	0	40	0	0	logfile
✔	6MB3	9065	2024-12-31	2018-08-29	3.37	3.47	—	3.4	0.020	1.75	0.0	0.09	9.45	0.01	2.273	0.28	0.00	3.7	96.1	0.1	0.34	0.73	0.86	4.52	3.4	0.003	0.69	0.0	0.04	14.07	0.00	2.510	5.35	2.36	5.3	94.7	0.0	-0.15	1.25	0.74	0.88	3.64	16423	2178	19	0	0	0	0	logfile
✔	6HE4	0209	2024-12-30	2018-08-20	4.85	4.88	—	4.8	0.036	3.65	111.0	0.21	19.33	0.03	1.953	1.83	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	4.8	0.005	1.08	0.0	0.05	15.23	0.01	1.851	29.15	0.00	8.0	91.3	0.7	-1.45	1.95	0.58	0.77	—	12684	1602	11	0	10	0	0	logfile
✔	6HD5	0201	2024-12-29	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.79	0.0	0.04	11.83	0.00	2.476	16.34	0.00	5.6	94.2	0.2	-0.50	2.01	0.45	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	6AHC	9623	2024-12-26	2018-08-17	3.45	3.82	—	3.8	0.008	1.06	0.0	0.06	10.67	0.01	2.268	3.08	0.66	7.9	92.0	0.1	-4.33	0.58	0.77	2.27	3.8	0.003	0.77	0.0	0.05	15.09	0.00	2.303	6.46	2.68	7.3	92.7	0.0	-1.00	0.75	0.66	0.85	1.72	46106	6052	8	0	0	0	0	logfile
✔	6EF3	9045	2024-12-26	2018-08-15	4.17	3.04	—	3.8	0.016	1.11	0.0	0.07	12.10	0.01	1.983	5.80	0.07	14.7	85.2	0.0	-5.91	0.65	0.81	—	3.8	0.004	0.74	0.0	0.05	13.38	0.00	1.323	6.96	0.02	6.3	93.7	0.0	-1.86	0.76	0.66	0.82	—	44271	5824	30	0	6	0	0	logfile
✔	6HCo	0196	2024-12-30	2018-08-15	3.58	4.08	—	3.7	0.009	1.05	0.0	0.06	10.57	0.01	2.082	7.85	0.45	7.9	92.1	0.0	-4.59	0.65	0.75	1.63	3.7	0.007	0.85	0.0	0.05	13.31	0.00	2.480	16.35	2.38	6.8	93.2	0.0	-0.43	1.47	0.67	0.83	2.15	12338	1576	9	0	5	0	0	logfile
✔	6HBU	0190	2024-12-28	2018-08-13	3.09	3.04	—	3.1	0.009	1.18	0.0	0.06	11.56	0.01	1.965	4.88	0.00	4.9	94.6	0.5	-5.40	0.75	0.86	5.08	3.1	0.003	0.69	0.0	0.04	15.33	0.00	2.235	6.89	1.81	5.3	94.5	0.2	0.96	0.54	0.78	0.88	3.72	9146	1168	4	0	4	0	0	logfile
✔	6AGF	9617	2024-12-29	2018-08-11	3.2	3.30	—	3.3	0.014	1.54	0.0	0.07	19.06	0.01	2.059	9.38	5.06	6.0	93.5	0.5	-4.93	0.62	0.84	3.52	3.3	0.003	0.69	0.0	0.04	16.83	0.00	2.413	5.45	2.92	4.3	95.6	0.1	1.15	0.67	0.63	0.85	2.28	10980	1311	7	0	16	0	0	logfile
✔	6EBM	9026	2024-12-28	2018-08-06	4.0	4.06	—	3.9	0.012	1.10	0.0	0.06	9.31	0.01	2.049	5.25	0.00	5.4	94.6	0.0	-4.86	0.66	0.79	—	3.8	0.004	0.91	0.0	0.05	14.78	0.00	2.428	15.03	2.59	4.1	95.9	0.0	0.89	0.95	0.66	0.80	—	8532	1192	4	0	0	0	0	logfile
✔	6EBL	9025	2024-12-30	2018-08-06	3.0	3.15	—	3.1	0.011	1.41	0.0	0.08	11.60	0.01	2.034	8.10	0.21	2.7	97.3	0.0	-4.53	0.69	0.87	4.42	3.1	0.003	0.66	0.0	0.04	16.04	0.00	2.495	5.89	0.96	2.5	97.5	0.0	0.55	1.06	0.73	0.89	3.36	13952	1708	20	0	4	128	0	logfile
✔	6E9E	9013	2024-12-28	2018-08-01	3.4	3.44	3.75	3.5	0.006	0.73	0.0	0.04	13.74	0.00	2.037	3.80	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.4	0.002	0.54	0.0	0.04	16.28	0.00	2.310	4.12	0.77	1.8	98.2	0.0	0.50	1.11	0.78	0.89	3.49	8163	863	3	51	1	0	0	logfile
✔	6E9Y	9020	2024-12-28	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.53	0.0	0.03	11.07	0.00	2.172	6.50	0.00	1.4	98.6	0.0	1.81	1.50	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile

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