Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HBU	0190	2024-12-28	2018-08-13	3.09	3.04	—	3.1	0.009	1.18	0.0	0.06	11.56	0.01	1.965	4.88	0.00	4.9	94.6	0.5	-5.40	0.75	0.86	5.08	3.1	0.003	0.69	0.0	0.04	15.33	0.00	2.235	6.89	1.81	5.3	94.5	0.2	0.96	0.54	0.78	0.88	3.72	9146	1168	4	0	4	0	0	logfile
✔	6AGF	9617	2024-12-29	2018-08-11	3.2	3.30	—	3.3	0.014	1.54	0.0	0.07	19.06	0.01	2.059	9.38	5.06	6.0	93.5	0.5	-4.93	0.62	0.84	3.52	3.3	0.003	0.69	0.0	0.04	16.83	0.00	2.413	5.45	2.92	4.3	95.6	0.1	1.15	0.67	0.63	0.85	2.28	10980	1311	7	0	16	0	0	logfile
✔	6EBM	9026	2024-12-28	2018-08-06	4.0	4.06	—	3.9	0.012	1.10	0.0	0.06	9.31	0.01	2.049	5.25	0.00	5.4	94.6	0.0	-4.86	0.66	0.79	—	3.8	0.004	0.91	0.0	0.05	14.78	0.00	2.428	15.03	2.59	4.1	95.9	0.0	0.89	0.95	0.66	0.80	—	8532	1192	4	0	0	0	0	logfile
✔	6EBL	9025	2024-12-30	2018-08-06	3.0	3.15	—	3.1	0.011	1.41	0.0	0.08	11.60	0.01	2.034	8.10	0.21	2.7	97.3	0.0	-4.53	0.69	0.87	4.42	3.1	0.003	0.66	0.0	0.04	16.04	0.00	2.495	5.89	0.96	2.5	97.5	0.0	0.55	1.06	0.73	0.89	3.36	13952	1708	20	0	4	128	0	logfile
✔	6E9Y	9020	2024-12-28	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.53	0.0	0.03	11.07	0.00	2.172	6.50	0.00	1.4	98.6	0.0	1.81	1.50	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6E9F	9014	2024-12-28	2018-08-01	3.3	3.57	3.33	3.5	0.011	1.13	0.0	0.07	16.25	0.01	1.872	10.69	0.00	8.1	91.9	0.0	-5.59	0.66	0.81	3.51	3.5	0.005	0.72	0.0	0.04	18.39	0.00	1.972	9.79	3.74	5.2	94.8	0.0	-1.66	1.14	0.68	0.85	2.79	8745	864	4	79	1	0	0	logfile
✔	6E9E	9013	2024-12-28	2018-08-01	3.4	3.44	3.75	3.5	0.006	0.73	0.0	0.04	13.74	0.00	2.037	3.80	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.4	0.002	0.54	0.0	0.04	16.28	0.00	2.310	4.12	0.77	1.8	98.2	0.0	0.50	1.11	0.78	0.89	3.49	8163	863	3	51	1	0	0	logfile
✔	6H66	0145	2024-12-29	2018-07-26	4.16	4.23	3.99	4.2	0.008	0.88	0.0	0.05	13.22	0.01	2.070	15.41	0.17	10.4	89.4	0.2	-3.09	0.61	0.76	—	4.2	0.002	0.63	0.0	0.04	15.11	0.00	2.308	18.78	0.00	8.0	92.0	0.0	0.41	1.84	0.62	0.77	—	10017	667	4	30	1	0	4120	logfile
✔	6H6B	0148	2024-12-28	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.3	0.004	0.87	0.0	0.18	11.72	0.00	2.490	4.58	3.75	17.7	82.3	0.0	-3.72	1.82	0.40	0.77	3.62	8060	580	10	0	0	0	4100	logfile
✔	6E7B	8997	2024-12-27	2018-07-25	3.5	3.67	3.28	3.7	0.006	0.83	0.0	0.04	11.89	0.00	2.009	5.71	0.14	6.5	93.5	0.0	-4.13	0.56	0.76	2.80	3.6	0.003	0.73	0.0	0.05	16.30	0.00	1.944	11.71	3.57	4.0	96.0	0.0	-0.91	0.96	0.57	0.80	1.83	6774	854	4	0	4	0	0	logfile
✔	6H61	0143	2024-12-29	2018-07-25	4.02	4.20	3.87	4.0	0.007	0.84	0.0	0.05	13.66	0.00	2.107	14.74	0.18	9.5	90.5	0.0	-2.98	0.62	0.78	—	4.0	0.003	0.63	0.0	0.04	14.79	0.00	2.332	21.99	0.00	8.6	91.4	0.0	0.18	1.81	0.63	0.78	—	9912	660	4	30	1	0	4057	logfile
✔	6E7C	8998	2024-12-27	2018-07-25	3.65	3.83	3.42	3.8	0.007	0.85	0.0	0.04	12.70	0.00	1.901	7.73	0.00	6.8	93.2	0.0	-4.32	0.50	0.75	3.05	3.8	0.004	0.78	0.0	0.05	16.41	0.00	1.931	13.88	1.92	4.1	95.9	0.0	-1.48	0.91	0.49	0.77	2.15	6780	854	4	0	4	0	0	logfile
✔	6H5Q	0141	2024-12-26	2018-07-25	3.3	3.43	—	3.4	0.010	1.14	0.0	0.06	11.79	0.01	2.105	11.72	1.54	4.0	96.0	0.0	-4.31	0.46	0.87	4.00	3.4	0.004	0.68	0.0	0.04	15.11	0.00	2.446	8.41	2.04	2.9	97.1	0.0	0.38	0.61	0.49	0.89	2.88	46650	5715	30	90	0	0	0	logfile
✔	6H5S	0142	2024-12-26	2018-07-25	3.3	3.45	—	3.4	0.010	1.12	0.0	0.06	11.84	0.01	1.817	7.18	0.65	7.3	92.7	0.0	-5.39	0.51	0.88	4.96	3.4	0.003	0.62	0.0	0.04	15.81	0.00	2.456	6.94	2.47	3.1	96.8	0.0	-0.29	0.61	0.52	0.89	3.35	44700	5445	30	90	0	0	0	logfile
✔	6H5i	0140	2024-12-28	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.7	0.004	0.77	0.0	0.04	14.81	0.00	2.450	13.22	1.33	4.2	95.8	0.0	1.17	1.87	0.37	0.24	0.10	43900	5392	26	0	0	0	0	logfile
✔	6H3C	0132	2024-12-27	2018-07-18	3.9	3.99	3.83	3.9	0.020	1.86	0.0	0.10	10.54	0.01	1.965	1.76	0.00	5.3	94.2	0.4	-0.37	0.73	0.68	1.52	3.9	0.004	0.70	0.0	0.04	15.00	0.00	1.692	10.57	2.16	8.0	91.8	0.3	-0.88	1.00	0.75	0.72	1.66	49982	3146	14	0	2	2	24860	logfile
✔	6E3Y	8978	2024-12-28	2018-07-16	3.3	4.08	—	3.7	0.007	1.00	0.0	0.06	9.69	0.01	2.282	4.51	0.00	2.6	97.4	0.0	-3.02	0.78	0.81	2.06	3.7	0.003	0.71	0.0	0.04	14.06	0.00	2.397	9.12	1.88	2.2	97.8	0.0	0.96	1.35	0.79	0.83	1.95	9434	1194	8	0	1	0	0	logfile
✔	6A90	6995	2024-12-29	2018-07-11	2.8	2.90	—	2.9	0.011	1.23	0.0	0.07	12.07	0.01	2.302	3.60	1.75	7.6	92.1	0.3	-5.83	0.60	0.83	3.90	2.9	0.003	0.67	0.0	0.04	15.41	0.00	2.544	4.55	2.53	6.0	94.0	0.0	0.22	1.26	0.62	0.86	3.03	11085	1380	5	0	8	0	0	logfile
✔	6A91	6996	2024-12-30	2018-07-11	3.2	3.32	—	3.3	0.009	1.14	0.0	0.06	13.00	0.01	2.238	6.00	1.22	7.8	91.6	0.6	-6.38	0.60	0.82	4.21	3.3	0.003	0.68	0.0	0.04	15.61	0.00	2.423	4.46	3.14	7.5	92.3	0.1	-0.63	0.71	0.65	0.86	2.84	11182	1380	6	0	10	3	0	logfile
✔	6E1M	8957	2024-12-28	2018-07-10	3.3	3.50	3.31	3.6	0.018	1.61	0.0	0.08	14.98	0.01	1.976	8.65	0.11	8.4	91.5	0.1	-5.95	0.50	0.74	3.94	3.6	0.004	0.79	0.0	0.04	15.83	0.00	2.303	10.95	2.34	5.6	94.4	0.0	-0.42	0.71	0.55	0.77	2.24	8913	1072	6	0	23	2	0	logfile

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