Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TER	41198	2024-12-27	2023-07-06	2.59	2.80	2.25	2.8	0.007	0.89	0.0	0.05	18.43	0.01	2.289	10.67	0.00	6.1	93.9	0.0	-4.34	0.66	0.90	5.78	2.8	0.008	0.70	0.0	0.05	20.10	0.00	2.655	3.52	6.38	5.6	94.4	0.0	-3.91	0.85	0.66	0.91	6.73	5780	700	40	0	0	240	0	logfile
✔	8TEK	41189	2024-12-31	2023-07-06	3.6	2.85	3.88	3.4	0.015	0.65	0.0	0.04	15.86	0.00	2.065	14.54	0.00	3.9	96.0	0.1	-1.18	0.16	0.51	0.46	2.7	0.015	0.76	0.0	0.04	19.15	0.00	2.080	15.31	2.29	3.4	96.5	0.1	0.20	2.29	0.18	0.66	0.55	15250	1817	10	0	0	0	0	logfile
✔	8PP7	17797	2024-12-31	2023-07-06	2.91	3.46	2.95	3.2	0.004	0.60	0.0	0.04	25.19	0.00	2.222	2.26	0.69	2.9	97.1	0.0	0.98	0.81	0.77	2.20	3.2	0.005	0.60	0.0	0.04	25.96	0.00	2.331	4.84	1.38	2.4	97.6	0.0	1.51	0.53	0.84	0.87	2.29	15562	1165	18	306	8	0	0	logfile
✔	8JZS	36752	2024-12-28	2023-07-06	2.95	3.15	2.92	3.2	0.008	0.93	0.0	0.06	13.27	0.01	2.299	10.90	0.00	4.4	95.2	0.4	0.71	0.69	0.82	1.94	3.2	0.003	0.63	0.0	0.04	14.97	0.00	2.523	5.58	2.53	4.5	95.5	0.0	1.73	1.24	0.63	0.84	2.11	7500	972	4	0	6	0	0	logfile
✔	8TEo	41193	2024-12-27	2023-07-06	2.39	2.54	2.25	2.6	0.009	0.97	0.0	0.04	16.68	0.01	2.259	8.59	0.60	2.7	97.3	0.0	2.20	0.63	0.85	4.76	2.5	0.003	0.51	0.0	0.04	14.18	0.00	2.611	4.56	1.51	1.1	98.9	0.0	3.64	0.90	0.65	0.89	5.37	6507	784	12	0	34	9	0	logfile
✔	8JZZ	36755	2024-12-28	2023-07-06	3.31	3.67	3.40	3.7	0.002	0.54	0.0	0.04	13.17	0.00	2.205	9.02	0.24	4.4	95.6	0.0	-0.38	0.61	0.70	2.06	3.7	0.003	0.60	0.0	0.04	15.10	0.00	2.569	8.61	2.28	4.8	95.2	0.0	-0.14	0.98	0.59	0.71	2.03	8680	1198	6	0	0	0	0	logfile
✔	8TEQ	41195	2024-12-27	2023-07-06	2.84	3.16	2.42	3.1	0.003	0.56	0.0	0.04	17.77	0.01	2.300	6.75	0.00	2.0	98.0	0.0	-4.35	0.66	0.92	6.41	3.1	0.004	0.65	0.0	0.05	18.66	0.00	2.567	3.29	2.31	3.9	96.1	0.0	-3.08	0.46	0.65	0.93	6.23	6705	825	30	0	0	0	0	logfile
✔	8JZX	36754	2024-12-28	2023-07-06	2.5	2.84	2.49	2.9	0.009	1.14	0.0	0.06	11.30	0.01	2.300	8.04	0.28	6.1	93.7	0.2	-6.11	0.65	0.85	4.84	2.9	0.003	0.70	0.0	0.04	13.64	0.00	2.418	6.59	0.71	4.0	95.5	0.4	1.89	1.34	0.60	0.85	3.18	7108	910	4	0	8	0	0	logfile
✔	8TEJ	41188	2024-12-27	2023-07-06	2.55	2.41	2.49	2.5	0.004	0.57	0.0	0.04	17.73	0.00	1.984	2.78	2.87	4.7	95.3	0.0	2.14	0.58	0.85	2.31	2.5	0.003	0.50	0.0	0.04	17.78	0.00	2.485	4.05	1.20	4.1	95.9	0.0	2.36	0.24	0.57	0.85	2.61	3925	494	2	0	0	22	0	logfile
✔	8TEN	41192	2024-12-28	2023-07-06	2.98	2.30	2.85	2.8	0.003	0.54	0.0	0.04	17.49	0.00	2.079	3.70	1.07	3.1	96.9	0.0	2.34	0.55	0.82	1.76	2.8	0.003	0.58	0.0	0.04	18.07	0.00	2.468	5.33	1.90	2.5	97.5	0.0	2.45	0.94	0.56	0.83	1.42	7872	996	2	0	0	0	0	logfile
✔	8TEL	41190	2024-12-28	2023-07-06	2.77	2.48	2.67	2.8	0.004	0.55	0.0	0.04	17.77	0.00	2.075	3.10	1.20	4.2	95.8	0.0	2.33	0.63	0.86	2.14	2.7	0.002	0.50	0.0	0.04	17.91	0.00	2.514	4.49	2.75	3.5	96.5	0.0	2.77	0.91	0.63	0.87	2.40	7806	988	2	0	0	0	0	logfile
✔	8TEi	41187	2024-12-29	2023-07-06	2.58	2.31	2.45	2.6	0.025	0.69	0.0	0.04	21.72	0.01	2.028	3.45	0.00	1.6	98.4	0.0	2.53	0.66	0.84	3.91	2.6	0.002	0.51	0.0	0.04	18.94	0.00	2.493	4.71	1.18	1.6	98.4	0.0	2.50	0.92	0.66	0.88	3.56	9816	1108	6	0	24	214	0	logfile
✔	8TEG	41185	2024-12-27	2023-07-06	2.15	2.08	2.12	2.2	0.007	0.74	0.0	0.04	15.68	0.00	2.185	1.68	1.05	1.4	98.6	0.0	1.81	0.63	0.88	4.56	2.2	0.003	0.58	0.0	0.04	16.02	0.00	2.612	2.24	1.05	1.4	98.6	0.0	1.98	1.20	0.63	0.89	4.74	4518	561	4	0	0	88	0	logfile
✔	8JZN	36748	2024-12-30	2023-07-05	2.47	2.92	2.74	2.9	0.019	1.12	0.0	0.08	21.23	0.00	1.784	9.87	1.91	4.2	95.8	0.0	-2.06	0.61	0.79	3.69	2.9	0.003	0.60	0.0	0.04	16.57	0.00	2.467	6.52	2.22	3.5	96.5	0.0	1.16	1.55	0.57	0.77	2.95	12831	1489	3	0	20	0	0	logfile
✔	8PoK	17793	2024-12-28	2023-07-05	3.4	3.50	3.48	3.4	0.007	0.99	4.0	0.06	10.58	0.01	2.115	7.67	0.46	10.5	89.5	0.0	-2.24	0.57	0.78	2.62	3.4	0.003	0.62	0.0	0.04	14.81	0.00	2.431	3.68	3.57	7.7	92.3	0.0	-0.60	0.58	0.62	0.82	1.78	8042	1024	6	0	1	0	0	logfile
✔	8JZB	36741	2024-12-31	2023-07-05	2.76	3.65	2.90	3.2	0.007	1.02	0.0	0.06	19.24	0.01	2.240	6.94	6.93	2.1	97.7	0.1	0.59	0.87	0.91	3.32	3.3	0.003	0.64	0.0	0.05	16.62	0.00	2.384	5.06	1.23	2.8	97.2	0.0	0.55	0.48	0.83	0.86	3.26	16660	2120	12	0	15	0	0	logfile
✔	8TDW	41175	2024-12-29	2023-07-05	3.04	3.24	3.20	3.2	0.005	0.56	0.0	0.05	14.08	0.00	2.217	6.55	0.00	5.6	94.4	0.0	-0.08	0.39	0.50	3.22	3.2	0.006	0.66	0.0	0.05	15.61	0.00	1.983	5.20	3.37	7.2	92.8	0.0	-0.65	0.33	0.55	0.73	2.91	11359	1830	8	12	2	0	0	logfile
✔	8TEA	41179	2024-12-27	2023-07-05	3.4	2.31	—	2.0	0.004	0.74	0.0	0.05	13.18	0.01	2.256	5.80	0.30	4.4	95.6	0.0	-0.71	0.72	0.68	2.75	2.0	0.002	0.61	0.0	0.04	14.94	0.00	2.306	9.76	1.36	3.4	96.6	0.0	-0.14	0.40	0.71	0.68	2.21	6054	780	7	0	0	0	0	logfile
✔	8PoP	17794	2024-12-28	2023-07-05	3.0	2.77	2.97	3.0	0.009	1.44	0.0	0.07	20.03	0.01	2.277	3.16	0.12	0.7	99.3	0.0	-0.51	0.68	0.84	2.21	3.0	0.003	0.60	0.0	0.03	21.89	0.00	2.436	4.65	2.27	0.1	99.9	0.0	3.98	1.36	0.71	0.83	1.54	8929	953	11	56	0	0	0	logfile
✔	8TDV	41174	2024-12-29	2023-07-05	3.44	3.66	3.43	3.6	0.002	0.53	0.0	0.04	14.04	0.00	2.000	6.00	0.53	7.4	92.6	0.0	-0.51	0.53	0.61	1.95	3.6	0.003	0.66	0.0	0.04	16.27	0.00	2.093	7.34	4.09	7.2	92.8	0.0	-0.06	1.35	0.53	0.67	1.41	10957	1740	8	13	2	0	0	logfile

• ← previous
• Page 93 of 408
• next →