Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PoE	17789	2024-12-29	2023-07-04	4.2	4.40	4.17	4.5	0.003	0.64	0.0	0.04	14.20	0.00	2.265	9.34	0.00	2.8	97.2	0.0	1.48	0.57	0.71	—	4.5	0.003	0.62	0.0	0.04	14.46	0.00	2.409	7.36	0.00	3.1	96.8	0.1	1.29	1.16	0.57	0.72	—	10947	1371	3	0	0	0	0	logfile
✔	8PoC	17788	2024-12-27	2023-07-04	4.0	4.12	3.87	4.1	0.003	0.67	0.0	0.03	14.86	0.00	2.324	6.38	0.00	3.0	97.0	0.0	2.14	0.77	0.81	—	4.1	0.004	0.65	0.0	0.03	17.70	0.00	2.542	6.69	4.81	2.8	97.2	0.0	2.92	1.43	0.77	0.82	—	4924	616	4	0	0	0	0	logfile
✔	8PoG	17791	2024-12-27	2023-07-04	4.15	4.36	4.10	4.3	0.003	0.59	0.0	0.04	15.83	0.01	2.242	5.44	0.00	2.3	97.7	0.0	0.40	0.77	0.80	—	4.3	0.003	0.57	0.0	0.04	16.33	0.00	2.571	4.62	0.00	3.1	96.9	0.0	2.26	1.93	0.76	0.79	—	4964	624	4	0	0	0	0	logfile
✔	8TDN	41171	2024-12-27	2023-07-04	3.1	3.48	2.78	3.4	0.004	0.54	0.0	0.05	15.57	0.00	2.270	9.57	0.00	7.9	92.1	0.0	-2.86	0.59	0.86	5.30	3.4	0.004	0.55	0.0	0.05	15.38	0.00	2.632	7.07	1.01	8.8	91.2	0.0	-3.07	0.37	0.59	0.87	5.31	3620	465	5	0	0	0	0	logfile
✔	8TDo	41172	2024-12-27	2023-07-04	3.1	3.56	2.70	3.5	0.005	0.56	0.0	0.05	13.25	0.01	2.175	16.36	0.00	3.4	96.6	0.0	-3.41	0.50	0.84	5.15	3.4	0.003	0.52	0.0	0.05	15.07	0.00	2.461	8.36	1.90	6.5	93.5	0.0	-3.54	0.35	0.51	0.84	5.19	2892	372	4	0	0	0	0	logfile
✔	8JYS	36730	2024-12-27	2023-07-03	4.5	4.28	3.75	4.3	0.004	0.96	0.0	0.05	17.51	0.01	2.197	20.35	1.88	12.7	86.1	1.2	-3.49	0.67	0.71	—	4.3	0.004	0.82	0.0	0.05	13.23	0.01	2.538	15.81	0.27	15.1	83.8	1.2	-3.34	1.19	0.68	0.72	—	3522	441	4	0	0	0	0	logfile
✔	8TDJ	41164	2024-12-26	2023-07-03	3.7	4.17	3.11	3.5	0.002	0.46	0.0	0.04	11.53	0.00	2.162	3.29	0.36	0.7	99.3	0.0	3.76	0.63	0.78	2.50	3.5	0.002	0.50	0.0	0.04	12.25	0.00	2.360	4.94	0.78	0.9	99.1	0.0	4.79	0.39	0.63	0.79	2.50	43162	3269	7	0	0	0	20391	logfile
✔	8JY5	36720	2024-12-29	2023-07-03	4.17	7.05	4.27	6.5	0.003	0.66	0.0	0.04	13.66	0.00	2.119	12.08	0.00	2.4	97.5	0.1	0.01	0.63	0.77	—	6.5	0.003	0.71	0.0	0.04	13.52	0.00	2.338	17.17	0.00	2.9	97.0	0.1	0.46	3.28	0.63	0.81	—	11511	1457	1	0	0	0	0	logfile
✔	8JY7	36722	2024-12-28	2023-07-03	3.2	2.66	3.25	2.9	0.003	0.60	0.0	0.04	12.18	0.00	2.340	8.29	0.00	3.6	96.4	0.0	1.38	0.60	0.76	2.13	2.9	0.003	0.58	0.0	0.04	14.06	0.00	2.570	7.06	2.20	5.2	94.8	0.0	1.25	1.56	0.65	0.81	2.04	7292	968	4	0	0	0	0	logfile
✔	8TDM	41168	2024-12-26	2023-07-03	3.7	4.38	3.17	3.9	0.002	0.44	0.0	0.04	12.36	0.00	2.343	4.74	0.05	1.7	98.3	0.0	4.47	0.65	0.78	2.02	3.9	0.004	0.52	0.0	0.04	12.98	0.00	2.326	4.98	1.72	1.8	98.2	0.0	4.51	1.25	0.65	0.79	2.23	43029	3269	7	0	0	0	20279	logfile
✔	8JYP	36729	2024-12-29	2023-07-03	3.38	4.15	3.49	3.8	0.003	0.62	0.0	0.05	14.64	0.00	2.291	5.18	0.00	2.5	97.5	0.0	0.39	0.84	0.84	2.35	3.8	0.003	0.57	0.0	0.04	13.37	0.00	2.538	4.71	1.00	2.8	97.2	0.0	1.13	1.06	0.84	0.85	2.37	6627	795	7	0	14	0	0	logfile
✔	8JY8	36723	2024-12-28	2023-07-03	2.45	2.34	2.57	2.4	0.005	0.69	0.0	0.04	17.05	0.01	2.343	7.64	1.65	2.1	97.9	0.0	0.01	0.60	0.75	3.63	2.4	0.003	0.63	0.0	0.04	16.74	0.01	2.469	7.10	2.75	3.2	96.8	0.0	1.74	0.51	0.68	0.81	4.56	7392	968	8	0	4	0	0	logfile
✔	8PNV	17786	2024-12-30	2023-07-02	2.048	1.96	2.05	2.0	0.004	0.66	0.0	0.04	17.46	0.01	2.040	3.74	2.87	1.1	98.9	0.0	2.57	0.79	0.86	5.51	2.0	0.004	0.64	0.0	0.04	16.29	0.00	2.491	3.10	2.63	1.5	98.5	0.0	2.14	1.01	0.79	0.87	5.49	13098	1626	30	0	6	522	0	logfile
✔	8TCo	41156	2024-12-30	2023-07-02	2.8	2.31	—	2.1	0.003	0.64	0.0	0.05	14.09	0.01	2.138	8.05	0.00	3.5	96.5	0.0	-0.22	0.76	0.75	3.03	2.1	0.005	0.89	2.0	0.05	15.89	0.00	2.031	11.68	2.35	3.4	96.6	0.0	-0.09	1.04	0.77	0.76	2.72	13222	1633	12	0	15	0	0	logfile
✔	8PNU	17785	2024-12-30	2023-07-02	2.12	2.03	2.12	2.1	0.004	0.64	0.0	0.04	17.64	0.01	2.038	4.41	2.87	0.7	99.3	0.0	2.57	0.82	0.87	5.05	2.1	0.004	0.69	0.0	0.04	16.25	0.00	2.374	3.36	1.91	1.5	98.5	0.0	2.11	1.68	0.81	0.88	5.52	12888	1626	30	0	12	264	0	logfile
✔	8JXT	36712	2024-12-28	2023-07-01	3.07	3.35	3.13	3.4	0.005	0.68	0.0	0.04	12.50	0.01	2.228	7.13	0.24	5.4	94.6	0.0	-0.33	0.55	0.69	2.25	3.4	0.002	0.57	0.0	0.04	14.67	0.00	2.525	4.59	1.65	2.9	97.1	0.0	0.61	1.20	0.56	0.73	1.83	8298	1107	6	0	2	0	0	logfile
✔	8JXR	36710	2024-12-28	2023-07-01	3.57	3.50	3.47	3.6	0.004	0.50	0.0	0.05	12.64	0.00	2.023	4.33	0.11	2.2	97.8	0.0	-1.28	0.56	0.73	1.65	3.6	0.003	0.59	0.0	0.04	14.93	0.00	2.522	6.44	1.96	2.5	97.5	0.0	1.31	0.98	0.64	0.81	2.61	8616	1108	7	0	3	0	0	logfile
✔	8JXX	36716	2024-12-28	2023-07-01	3.06	3.38	3.15	3.4	0.007	0.82	0.0	0.05	13.57	0.01	2.173	4.81	0.00	4.8	95.2	0.0	-0.22	0.63	0.79	2.61	3.5	0.003	0.57	0.0	0.04	14.97	0.00	2.551	3.55	2.02	3.4	96.6	0.0	1.09	0.33	0.60	0.77	1.73	8493	1103	6	0	1	0	0	logfile
✔	8JXV	36714	2024-12-28	2023-07-01	3.21	2.43	3.22	3.3	0.007	0.83	0.0	0.05	13.11	0.00	2.068	12.58	0.00	5.8	94.2	0.0	-0.75	0.70	0.69	1.54	3.3	0.003	0.65	0.0	0.04	14.73	0.00	2.470	7.49	1.45	4.3	95.7	0.0	0.47	0.35	0.71	0.71	1.07	7935	1040	6	0	1	0	0	logfile
✔	8JXW	36715	2024-12-28	2023-07-01	3.01	3.30	3.13	3.4	0.006	0.82	0.0	0.05	13.11	0.01	2.092	6.36	0.80	4.2	95.8	0.0	-0.59	0.61	0.77	3.22	3.4	0.003	0.58	0.0	0.04	14.77	0.00	2.503	3.36	2.52	3.6	96.4	0.0	0.82	0.34	0.58	0.76	2.37	8389	1108	6	0	1	0	0	logfile

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