Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JXD	36697	2024-12-29	2023-06-30	3.3	3.46	3.42	3.5	0.004	0.66	0.0	0.05	17.24	0.01	2.029	9.03	2.45	6.5	93.5	0.0	-0.71	0.79	0.80	2.36	3.5	0.003	0.64	0.0	0.05	15.87	0.00	2.193	8.10	4.37	6.4	93.6	0.0	-0.69	1.50	0.80	0.81	2.02	10334	1298	12	0	26	0	0	logfile
✔	8JXA	36694	2024-12-30	2023-06-30	3.8	3.24	3.75	3.2	0.005	0.79	0.0	0.05	18.36	0.01	2.152	7.90	2.95	7.9	91.9	0.2	-1.12	0.66	0.75	1.94	3.2	0.003	0.64	0.0	0.05	15.77	0.00	2.169	5.52	2.64	7.9	92.0	0.1	-0.83	0.31	0.64	0.66	1.85	11889	1439	13	0	61	0	0	logfile
✔	8JXH	36701	2024-12-29	2023-06-30	3.5	3.14	3.38	3.3	0.005	0.81	0.0	0.05	16.88	0.01	2.130	7.78	2.62	6.6	93.4	0.1	-1.08	0.72	0.80	2.13	3.3	0.004	0.68	0.0	0.05	15.98	0.00	2.142	6.19	4.05	7.0	93.0	0.0	-0.83	1.45	0.74	0.82	2.10	11503	1423	11	0	51	0	0	logfile
✔	8JXi	36702	2024-12-29	2023-06-30	3.4	3.08	3.41	3.3	0.005	0.89	0.0	0.06	16.69	0.01	2.126	7.87	2.07	6.9	93.0	0.1	-0.57	0.71	0.79	2.33	3.3	0.005	0.69	0.0	0.05	15.70	0.00	2.119	5.05	2.86	6.2	93.8	0.1	-0.36	0.42	0.75	0.84	2.27	11506	1421	11	0	53	0	0	logfile
✔	8PNP	17782	2024-12-31	2023-06-30	2.49	2.59	2.43	2.6	0.003	0.50	0.0	0.04	18.52	0.00	2.019	4.32	1.24	2.2	97.7	0.1	0.87	0.81	0.91	3.66	2.6	0.003	0.58	0.0	0.04	18.53	0.00	2.180	4.67	2.03	2.9	97.1	0.0	0.88	0.91	0.81	0.92	3.75	14460	1715	9	29	0	43	0	logfile
✔	8JXG	36700	2024-12-29	2023-06-30	3.2	3.02	3.46	3.3	0.005	0.82	0.0	0.05	19.60	0.02	2.194	7.92	2.17	7.0	92.8	0.2	-0.81	0.68	0.76	1.89	3.3	0.003	0.67	0.0	0.05	16.35	0.00	2.153	6.30	2.54	6.5	93.5	0.0	-0.60	1.45	0.70	0.81	1.58	9810	1187	11	0	58	0	0	logfile
✔	8JXB	36695	2024-12-29	2023-06-30	3.7	3.47	3.62	3.5	0.005	0.77	0.0	0.05	15.62	0.01	2.126	8.21	2.98	8.0	91.9	0.1	-1.23	0.71	0.79	2.17	3.5	0.003	0.59	0.0	0.04	15.41	0.00	2.191	5.23	4.30	6.5	93.5	0.0	-1.06	0.35	0.74	0.80	1.93	10971	1374	9	0	48	0	0	logfile
✔	8JX9	36693	2024-12-30	2023-06-30	3.8	3.45	3.73	3.4	0.004	0.80	0.0	0.05	17.92	0.01	2.145	6.88	2.26	7.8	92.1	0.1	-1.05	0.64	0.68	1.57	3.4	0.004	0.66	0.0	0.05	15.72	0.00	2.153	5.11	1.94	8.4	91.6	0.0	-0.96	0.37	0.67	0.70	1.53	11822	1439	11	0	56	0	0	logfile
✔	8JXJ	36703	2024-12-28	2023-06-30	3.9	3.45	3.79	3.5	0.004	0.80	0.0	0.05	17.72	0.01	2.143	9.75	1.79	8.1	91.9	0.0	-1.22	0.73	0.79	2.30	3.5	0.003	0.69	0.0	0.05	15.69	0.00	2.191	7.60	3.88	8.3	91.7	0.0	-1.38	0.38	0.76	0.81	2.05	9158	1140	8	0	26	0	0	logfile
✔	8JX7	36691	2024-12-29	2023-06-30	3.6	4.97	3.68	4.2	0.003	0.65	0.0	0.04	17.21	0.00	2.057	8.94	0.00	2.3	97.7	0.0	0.20	0.63	0.77	0.93	4.2	0.003	0.91	0.0	0.05	16.87	0.00	2.423	12.72	1.99	1.6	98.4	0.0	0.51	1.69	0.63	0.84	0.97	11237	1416	1	0	0	0	0	logfile
✔	8JXF	36699	2024-12-29	2023-06-30	3.6	2.90	3.47	3.2	0.005	0.86	0.0	0.06	19.14	0.01	2.150	9.11	1.73	5.6	94.0	0.3	-0.39	0.69	0.77	2.44	3.2	0.003	0.65	0.0	0.05	15.74	0.00	2.158	5.65	3.85	4.8	95.2	0.0	-0.21	0.41	0.70	0.79	1.98	9618	1162	11	0	57	0	0	logfile
✔	8TCG	41154	2024-12-30	2023-06-30	3.4	3.89	3.42	3.8	0.014	1.68	0.0	0.08	12.48	0.01	1.790	0.34	0.16	3.5	96.5	0.0	0.10	0.76	0.73	2.15	3.8	0.004	0.62	0.0	0.04	14.57	0.00	1.863	4.63	1.27	6.4	93.6	0.0	-0.67	2.19	0.78	0.78	2.76	11597	754	6	0	13	0	5652	logfile
✔	8TCF	41153	2024-12-28	2023-06-30	2.9	3.25	2.96	3.2	0.014	1.40	0.0	0.09	12.16	0.01	1.804	0.72	0.41	3.7	96.2	0.1	0.27	0.75	0.76	3.61	3.1	0.003	0.66	0.0	0.05	14.98	0.00	1.939	6.06	2.03	3.4	96.4	0.1	0.30	0.76	0.73	0.80	3.13	7050	878	9	0	22	0	0	logfile
✔	8JWG	36682	2024-12-29	2023-06-29	3.54	4.16	3.72	4.0	0.005	0.72	0.0	0.04	9.43	0.00	2.223	2.05	0.00	7.9	92.1	0.0	-3.71	0.68	0.71	1.76	4.0	0.003	0.68	0.0	0.04	14.56	0.00	2.427	7.95	1.77	6.0	94.0	0.0	-0.66	0.95	0.69	0.74	0.84	9620	1192	2	0	1	0	0	logfile
✔	8PMQ	17764	2024-12-28	2023-06-29	3.53	3.56	3.44	3.6	0.005	0.74	0.0	0.05	14.38	0.01	2.266	6.53	0.50	5.9	94.1	0.0	0.65	0.78	0.84	1.96	3.6	0.003	0.57	0.0	0.04	15.92	0.00	1.167	5.21	2.64	4.3	95.7	0.0	1.53	1.46	0.77	0.84	1.20	7746	1007	6	0	2	0	0	logfile
✔	8JWF	36681	2024-12-29	2023-06-29	3.64	4.25	3.77	4.0	0.007	0.80	0.0	0.05	10.45	0.01	2.208	3.05	0.09	7.2	92.8	0.0	-3.42	0.69	0.74	1.48	4.0	0.003	0.65	0.0	0.04	13.99	0.00	2.528	7.21	1.29	5.9	94.1	0.0	0.60	2.33	0.71	0.76	0.72	9717	1204	2	0	1	0	0	logfile
✔	8JWH	36683	2024-12-27	2023-06-29	3.34	2.70	3.24	3.4	0.004	0.84	0.0	0.05	19.18	0.01	2.135	16.08	0.76	4.7	95.3	0.0	-0.43	0.74	0.77	1.81	3.4	0.003	0.71	0.0	0.04	19.47	0.01	2.532	12.30	3.42	5.2	94.8	0.0	0.34	0.95	0.74	0.77	1.58	4870	597	1	0	0	0	0	logfile
✔	8TC3	41151	2024-12-27	2023-06-29	2.57	2.79	2.58	2.8	0.003	0.47	0.0	0.04	18.01	0.00	2.266	7.50	0.46	0.9	99.1	0.0	0.50	0.72	0.88	5.45	2.8	0.003	0.50	0.0	0.04	18.28	0.00	2.629	6.78	2.06	1.5	98.5	0.0	0.84	0.67	0.67	0.86	4.90	4129	542	5	0	1	17	0	logfile
✔	8JVH	36674	2024-12-29	2023-06-28	3.19	3.79	3.33	3.7	0.005	0.78	0.0	0.05	9.56	0.00	2.195	2.24	0.18	8.6	91.4	0.0	-4.48	0.65	0.74	1.98	3.7	0.003	0.59	0.0	0.04	13.93	0.00	2.490	3.86	1.56	5.5	94.5	0.0	-0.96	1.35	0.63	0.75	1.31	9699	1205	1	0	0	0	0	logfile
✔	8JW4	36679	2024-12-29	2023-06-28	3.13	3.85	3.39	3.8	0.005	0.76	0.0	0.05	9.53	0.00	2.214	2.01	0.28	8.2	91.8	0.0	-4.11	0.63	0.70	2.66	3.8	0.003	0.63	0.0	0.04	14.02	0.00	2.506	4.27	1.12	6.0	94.0	0.0	-1.11	1.34	0.63	0.73	1.09	9582	1191	1	0	0	0	0	logfile

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