Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JVH	36674	2024-12-29	2023-06-28	3.19	3.79	3.33	3.7	0.005	0.78	0.0	0.05	9.56	0.00	2.195	2.24	0.18	8.6	91.4	0.0	-4.48	0.65	0.74	1.98	3.7	0.003	0.59	0.0	0.04	13.93	0.00	2.490	3.86	1.56	5.5	94.5	0.0	-0.96	1.35	0.63	0.75	1.31	9699	1205	1	0	0	0	0	logfile
✔	8PM2	17756	2024-12-28	2023-06-28	2.92	2.98	2.94	3.3	0.006	0.78	0.0	0.05	13.03	0.01	2.132	4.04	0.00	2.4	97.6	0.0	0.56	0.74	0.80	3.49	3.3	0.004	0.64	0.0	0.04	16.03	0.00	2.523	6.64	3.24	2.7	97.3	0.0	1.16	0.54	0.74	0.84	3.11	7821	1009	6	0	2	0	0	logfile
✔	8PM6	17758	2024-12-28	2023-06-28	3.22	3.42	3.06	3.4	0.005	0.80	1.0	0.05	18.41	0.01	2.200	14.16	0.42	4.8	95.2	0.0	0.94	0.49	0.75	1.34	3.4	0.003	0.57	0.0	0.04	16.65	0.00	2.531	7.57	4.32	4.5	95.5	0.0	1.61	1.87	0.56	0.80	1.35	7029	872	2	0	9	0	0	logfile
✔	8JVM	36677	2024-12-27	2023-06-28	3.86	4.13	3.89	3.9	0.006	1.08	1.0	0.06	14.54	0.01	2.138	27.03	1.75	16.3	82.1	1.6	-3.56	0.64	0.54	0.94	3.9	0.004	0.90	0.0	0.05	16.95	0.01	2.537	17.17	2.26	14.2	85.4	0.4	-3.23	1.24	0.64	0.53	0.54	3726	498	3	0	0	0	0	logfile
✔	8TB0	41144	2024-12-30	2023-06-28	3.47	3.76	3.50	3.8	0.003	0.65	0.0	0.04	14.04	0.00	0.884	8.94	0.11	5.6	94.4	0.0	-1.82	0.62	0.73	2.14	3.8	0.004	0.67	0.0	0.04	16.09	0.00	2.469	8.04	2.98	7.1	92.9	0.0	-1.56	0.73	0.64	0.77	1.89	8460	1090	4	0	0	0	0	logfile
✔	8PMD	17759	2024-12-28	2023-06-28	2.95	2.88	2.91	2.9	0.004	0.66	0.0	0.04	18.21	0.00	1.353	11.85	0.21	1.8	98.2	0.0	1.07	0.62	0.80	2.46	3.0	0.003	0.62	0.0	0.04	18.54	0.00	2.030	8.51	3.00	1.9	98.1	0.0	1.61	0.49	0.61	0.79	2.55	8844	1129	2	0	4	2	0	logfile
✔	8PMJ	17761	2024-12-29	2023-06-28	2.81	2.56	2.83	2.8	0.004	0.64	0.0	0.05	15.66	0.00	1.958	6.81	0.00	2.4	97.6	0.0	0.56	0.64	0.83	3.00	2.8	0.003	0.57	0.0	0.04	16.51	0.00	1.994	4.89	2.46	2.8	97.2	0.0	1.60	0.40	0.63	0.84	2.44	8985	1133	2	0	9	3	0	logfile
✔	8JWE	36680	2024-12-31	2023-06-28	2.74	2.66	2.57	2.7	0.046	2.12	0.0	0.15	13.17	0.01	1.322	4.95	0.00	6.2	93.5	0.4	-4.49	0.67	0.84	4.70	2.7	0.003	0.62	0.0	0.04	15.96	0.00	2.592	4.30	1.70	3.1	96.9	0.0	0.24	1.14	0.71	0.87	4.07	14861	1967	7	0	0	0	0	logfile
✔	8PM4	17757	2024-12-27	2023-06-28	2.93	3.28	3.02	3.2	0.007	0.63	0.0	0.04	20.61	0.01	2.220	11.13	1.32	1.7	98.3	0.0	1.17	0.74	0.82	2.99	3.2	0.005	0.58	0.0	0.04	21.25	0.00	2.499	8.02	1.76	1.8	98.2	0.0	1.80	1.14	0.74	0.82	2.83	6624	604	4	96	0	0	0	logfile
✔	8TAH	41135	2024-12-31	2023-06-27	2.89	2.18	3.39	2.1	0.005	0.66	0.0	0.05	13.05	0.01	2.043	2.22	4.46	4.0	96.0	0.0	-2.21	0.66	0.74	3.58	1.9	0.004	0.57	0.0	0.04	15.58	0.00	1.844	4.71	3.16	3.0	96.9	0.1	0.72	0.95	0.79	0.83	3.38	14978	1884	10	0	4	0	0	logfile
✔	8TAN	41138	2024-12-30	2023-06-27	3.05	3.69	3.01	3.4	0.004	0.77	0.0	0.05	13.80	0.00	2.194	5.98	2.19	6.7	93.3	0.0	-1.74	0.81	0.77	1.64	3.4	0.003	0.74	0.0	0.05	15.55	0.00	2.180	12.29	2.52	7.3	92.6	0.1	-1.31	1.38	0.81	0.77	1.64	13853	1698	8	0	18	0	0	logfile
✔	8TAo	41139	2024-12-30	2023-06-27	2.9	3.35	—	3.1	0.003	0.55	0.0	0.04	13.60	0.00	2.231	4.77	0.00	3.6	96.4	0.0	0.43	0.83	0.82	3.16	3.1	0.003	0.57	0.0	0.04	14.97	0.00	2.372	4.20	0.89	4.0	96.0	0.1	0.84	0.28	0.85	0.86	2.82	13422	1794	6	0	3	0	0	logfile
✔	8TAU	41142	2024-12-28	2023-06-27	3.5	3.03	3.36	1.8	0.006	0.79	0.0	0.00	7.52	0.01	2.188	4.55	0.00	2.1	97.9	0.0	-2.34	0.73	0.66	—	2.3	0.004	0.71	0.0	0.00	4.64	0.00	2.012	4.02	0.00	12.4	87.6	0.0	-1.54	0.68	0.78	0.73	—	54106	9002	25	0	4	0	18087	logfile
✔	8PKP	17751	2024-12-30	2023-06-27	3.2	4.15	3.27	3.5	0.006	0.67	0.0	0.04	17.68	0.01	2.193	11.76	0.52	2.7	97.3	0.0	0.64	0.87	0.81	1.59	3.5	0.005	0.67	0.0	0.04	17.73	0.00	2.412	11.57	2.23	2.7	97.3	0.0	1.47	0.54	0.90	0.86	1.43	64691	8135	20	0	1	0	0	logfile
✔	8JV6	36669	2024-12-28	2023-06-27	3.43	3.73	3.38	3.7	0.005	0.75	0.0	0.05	15.51	0.00	2.184	7.00	0.00	2.7	97.3	0.0	0.26	0.62	0.83	2.25	3.7	0.003	0.57	0.0	0.04	15.42	0.00	2.561	5.34	3.01	3.1	96.9	0.0	0.36	0.33	0.63	0.84	2.39	7458	948	6	0	15	0	0	logfile
✔	8JV5	36668	2024-12-28	2023-06-27	3.23	3.50	3.16	3.4	0.005	0.63	0.0	0.04	12.60	0.00	2.312	5.16	0.76	2.9	97.1	0.0	0.88	0.65	0.80	2.90	3.5	0.003	0.59	0.0	0.04	14.33	0.00	2.606	5.85	2.28	2.2	97.8	0.0	0.86	0.96	0.64	0.81	2.90	7480	949	6	0	12	0	0	logfile
✔	8PKG	17738	2024-12-27	2023-06-26	2.99	2.16	2.99	3.3	0.012	1.65	0.0	0.12	10.76	0.01	2.394	0.12	0.00	2.3	97.7	0.0	-3.24	0.52	0.75	2.62	3.3	0.003	0.71	0.0	0.05	16.94	0.00	2.505	9.27	1.71	2.3	97.7	0.0	-2.44	0.90	0.49	0.77	3.49	4314	552	6	0	0	0	0	logfile
✔	8JUN	36662	2024-12-29	2023-06-26	2.38	2.77	2.52	2.7	0.007	1.00	0.0	0.05	14.89	0.00	1.983	7.87	0.00	4.7	95.3	0.0	-1.69	0.64	0.81	3.78	2.7	0.003	0.56	0.0	0.04	16.37	0.00	1.869	5.44	1.41	2.7	97.3	0.0	0.90	1.22	0.66	0.84	3.88	11098	1356	4	0	4	0	0	logfile
✔	8PKF	17737	2024-12-27	2023-06-26	2.3673	1.91	2.30	2.6	0.013	1.73	0.0	0.12	11.30	0.01	2.355	0.12	0.00	2.3	97.7	0.0	-2.77	0.43	0.75	4.64	2.6	0.004	0.62	0.0	0.05	16.55	0.00	2.646	5.92	2.56	4.5	95.5	0.0	-2.25	1.95	0.53	0.84	4.83	4308	552	6	0	0	0	0	logfile
✔	8TA3	41127	2024-12-31	2023-06-26	2.46	2.64	2.45	2.6	0.013	1.82	1.0	0.09	13.07	0.01	2.519	0.13	0.92	2.5	97.4	0.1	-0.45	0.57	0.78	3.76	2.6	0.003	0.54	0.0	0.04	15.19	0.00	2.328	1.69	0.92	2.6	97.4	0.0	2.60	0.54	0.57	0.79	2.37	14837	942	4	0	2	0	7545	logfile

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