Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TA6	41130	2024-12-27	2023-06-26	4.03	4.31	5.52	4.2	0.013	1.99	1.0	0.10	15.10	0.01	2.524	0.91	2.10	9.4	90.2	0.4	-2.23	0.44	0.72	—	4.2	0.003	0.71	0.0	0.04	13.96	0.00	2.501	9.08	0.00	3.8	96.2	0.0	-1.46	1.54	0.45	0.68	—	2158	274	2	0	0	0	0	logfile
✔	8PKE	17736	2024-12-27	2023-06-26	3.39	3.23	3.17	3.6	0.013	1.75	0.0	0.13	11.50	0.01	1.732	0.23	0.00	2.3	97.7	0.0	-3.31	0.48	0.78	2.89	3.6	0.003	0.64	0.0	0.05	14.47	0.00	2.443	9.15	1.71	2.5	97.5	0.0	-2.44	1.62	0.47	0.82	3.82	4314	552	6	0	0	0	0	logfile
✔	8PKG	17738	2024-12-27	2023-06-26	2.99	2.16	2.99	3.3	0.012	1.65	0.0	0.12	10.76	0.01	2.394	0.12	0.00	2.3	97.7	0.0	-3.24	0.52	0.75	2.62	3.3	0.003	0.71	0.0	0.05	16.94	0.00	2.505	9.27	1.71	2.3	97.7	0.0	-2.44	0.90	0.49	0.77	3.49	4314	552	6	0	0	0	0	logfile
✔	8PK3	17724	2024-12-31	2023-06-24	3.4	2.43	3.39	2.0	0.005	0.96	0.0	0.06	19.40	0.01	1.122	12.13	0.72	8.1	91.7	0.2	-3.22	0.71	0.65	1.26	2.0	0.004	0.69	0.0	0.05	18.71	0.00	2.337	11.52	3.48	8.4	91.6	0.0	-2.48	0.35	0.71	0.68	0.96	14277	1752	18	0	27	0	0	logfile
✔	8T9H	41111	2024-12-30	2023-06-24	3.37	4.11	3.37	3.5	0.003	0.52	0.0	0.03	24.90	0.00	2.255	10.80	0.97	2.4	97.6	0.0	1.98	0.88	0.83	2.57	3.5	0.004	0.59	0.0	0.04	25.81	0.00	2.177	10.45	1.33	2.9	97.1	0.0	2.15	0.40	0.88	0.84	1.52	12039	1003	11	201	0	0	0	logfile
✔	8T9D	41107	2024-12-27	2023-06-23	4.66	5.67	4.89	4.6	0.003	0.82	0.0	0.04	11.89	0.01	1.248	11.17	0.00	10.2	89.5	0.3	-3.52	0.83	0.72	—	4.6	0.003	0.71	0.0	0.04	11.83	0.00	2.380	8.39	0.00	10.0	89.8	0.2	-1.14	1.32	0.86	0.79	—	49136	7745	26	0	20	0	0	logfile
✔	8PJJ	17711	2024-12-31	2023-06-23	4.24	6.93	4.39	4.4	0.003	0.75	0.0	0.04	17.53	0.00	2.120	19.23	0.72	9.6	90.1	0.3	-1.14	0.91	0.81	—	4.4	0.003	0.75	0.0	0.04	17.28	0.00	2.404	16.29	0.24	8.9	90.5	0.5	-1.21	0.48	0.92	0.83	—	8348	946	3	40	1	0	0	logfile
✔	8PJN	17713	2024-12-27	2023-06-23	3.4	3.52	3.41	3.6	0.007	0.73	0.0	0.05	14.18	0.01	2.251	5.43	0.00	5.1	94.9	0.0	1.04	0.78	0.86	2.67	3.6	0.003	0.50	0.0	0.04	15.71	0.00	2.597	3.52	1.88	4.7	95.3	0.0	2.06	0.27	0.78	0.89	2.11	6917	923	6	0	2	0	0	logfile
✔	8PJB	17703	2024-12-31	2023-06-23	3.62	4.40	3.69	4.1	0.006	0.99	2.0	0.06	18.76	0.03	2.096	11.57	4.25	5.6	93.2	1.2	-0.17	0.82	0.71	1.58	4.1	0.003	0.82	0.0	0.04	17.82	0.01	2.424	12.34	2.72	4.6	95.2	0.2	0.52	0.78	0.86	0.84	0.99	7840	962	3	9	2	0	0	logfile
✔	8T9A	41105	2024-12-30	2023-06-23	3.17	4.41	3.31	3.4	0.011	0.98	0.0	0.06	15.50	0.01	2.029	16.71	0.61	13.8	86.2	0.0	-5.00	0.84	0.74	1.83	3.4	0.003	0.71	0.0	0.05	15.93	0.00	2.521	8.04	1.83	6.2	93.8	0.0	-2.30	2.21	0.88	0.77	1.63	11785	1498	3	0	0	0	0	logfile
✔	8T9F	41109	2024-12-30	2023-06-23	2.6	3.21	2.66	3.0	0.004	0.59	0.0	0.04	25.25	0.00	1.469	4.80	0.00	2.1	97.9	0.0	1.11	0.88	0.87	2.94	3.0	0.005	0.57	0.0	0.04	26.30	0.00	2.409	5.21	2.01	2.3	97.7	0.0	1.99	0.50	0.88	0.88	2.49	13132	1031	12	244	1	0	0	logfile
✔	8JU0	36658	2024-12-27	2023-06-23	2.98	3.34	2.92	3.3	0.006	0.81	0.0	0.06	13.41	0.00	2.221	8.35	0.00	1.6	98.4	0.0	1.57	0.52	0.73	2.11	3.3	0.003	0.56	0.0	0.04	14.19	0.00	2.620	6.93	1.60	1.6	98.4	0.0	1.93	0.28	0.49	0.72	2.12	3199	431	2	0	1	0	0	logfile
✔	8PJP	17718	2024-12-27	2023-06-23	2.92	3.55	2.87	3.4	0.003	0.53	0.0	0.04	15.92	0.00	2.365	2.11	1.34	2.5	97.5	0.0	0.81	0.38	0.90	2.83	3.4	0.003	0.68	0.0	0.04	16.82	0.00	2.466	4.22	3.12	2.5	97.5	0.0	0.76	1.35	0.34	0.91	3.70	2157	286	3	0	2	0	0	logfile
✔	8JTV	36653	2024-12-27	2023-06-22	3.77	4.24	3.67	4.2	0.006	0.66	0.0	0.04	12.16	0.01	2.293	8.08	0.36	4.2	95.8	0.0	0.62	0.51	0.62	0.67	4.2	0.003	0.68	0.0	0.04	15.06	0.00	2.639	9.10	2.89	4.9	95.1	0.0	1.14	0.37	0.50	0.65	0.67	3067	437	2	0	1	0	0	logfile
✔	8JTT	36652	2024-12-27	2023-06-22	3.87	4.32	3.71	4.4	0.006	0.87	0.0	0.05	12.93	0.02	2.250	7.82	0.00	4.0	96.0	0.0	-2.01	0.51	0.57	0.20	4.4	0.003	0.68	0.0	0.04	15.58	0.00	2.623	8.28	2.46	4.0	96.0	0.0	0.21	1.16	0.52	0.60	-0.31	3321	454	2	0	1	0	0	logfile
✔	8T8E	41097	2024-12-28	2023-06-22	3.3	3.54	3.33	3.5	0.003	0.69	0.0	0.04	16.79	0.00	2.199	12.90	1.03	9.0	90.9	0.2	-3.74	0.72	0.78	1.57	3.5	0.004	0.64	0.0	0.04	17.60	0.00	2.533	9.02	2.87	8.6	91.4	0.0	-2.33	0.37	0.73	0.79	1.21	8755	1085	3	0	0	0	0	logfile
✔	8JTW	36654	2024-12-27	2023-06-22	3.23	3.56	3.23	3.6	0.002	0.56	0.0	0.04	13.05	0.00	2.309	2.70	0.00	4.3	95.7	0.0	0.14	0.57	0.76	1.88	3.6	0.003	0.57	0.0	0.04	14.65	0.00	2.589	3.17	0.91	5.4	94.6	0.0	0.60	0.29	0.55	0.77	1.57	4282	566	2	0	0	0	0	logfile
✔	8JTY	36656	2024-12-27	2023-06-22	3.26	3.60	3.26	3.6	0.003	0.55	0.0	0.04	16.26	0.00	2.217	4.12	0.00	5.0	95.0	0.0	-0.56	0.57	0.78	1.67	3.6	0.003	0.58	0.0	0.04	16.43	0.00	2.349	2.59	2.50	4.8	95.2	0.0	-0.29	0.22	0.53	0.76	1.69	4274	566	2	0	0	0	0	logfile
✔	8JTS	36651	2024-12-27	2023-06-22	4.14	4.41	3.90	4.4	0.008	0.93	0.0	0.05	14.11	0.02	2.249	8.90	0.31	5.0	95.0	0.0	-0.32	0.53	0.67	—	4.4	0.003	0.69	0.0	0.04	14.21	0.00	2.481	9.82	0.00	5.3	94.7	0.0	1.16	1.14	0.54	0.67	—	3330	461	2	0	1	0	0	logfile
✔	8T8M	41099	2024-12-30	2023-06-22	3.0	3.51	—	3.4	0.003	0.56	0.0	0.04	14.01	0.00	2.230	6.14	0.00	4.3	95.7	0.0	0.12	0.80	0.81	3.02	3.4	0.006	0.68	0.0	0.05	15.75	0.00	2.441	5.47	1.82	5.0	95.0	0.0	0.41	0.28	0.82	0.86	2.78	13146	1770	6	0	2	0	0	logfile

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