Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JTZ	36657	2024-12-27	2023-06-22	3.27	3.79	3.41	3.7	0.006	0.90	0.0	0.06	15.42	0.01	2.239	10.05	0.25	3.2	96.8	0.0	-1.05	0.52	0.74	1.46	3.7	0.003	0.59	0.0	0.04	15.96	0.00	2.563	8.04	4.43	3.0	97.0	0.0	1.40	0.35	0.53	0.75	1.37	3999	530	2	0	1	0	0	logfile
✔	8JTY	36656	2024-12-27	2023-06-22	3.26	3.60	3.26	3.6	0.003	0.55	0.0	0.04	16.26	0.00	2.217	4.12	0.00	5.0	95.0	0.0	-0.56	0.57	0.78	1.67	3.6	0.003	0.58	0.0	0.04	16.43	0.00	2.349	2.59	2.50	4.8	95.2	0.0	-0.29	0.22	0.53	0.76	1.69	4274	566	2	0	0	0	0	logfile
✔	8JTS	36651	2024-12-27	2023-06-22	4.14	4.41	3.90	4.4	0.008	0.93	0.0	0.05	14.11	0.02	2.249	8.90	0.31	5.0	95.0	0.0	-0.32	0.53	0.67	—	4.4	0.003	0.69	0.0	0.04	14.21	0.00	2.481	9.82	0.00	5.3	94.7	0.0	1.16	1.14	0.54	0.67	—	3330	461	2	0	1	0	0	logfile
✔	8JTB	36639	2024-12-27	2023-06-21	2.93	3.11	2.90	3.2	0.006	0.94	1.0	0.06	15.62	0.01	2.211	5.58	1.35	1.1	98.4	0.5	0.86	0.63	0.86	1.40	3.2	0.003	0.68	0.0	0.04	16.73	0.01	2.571	2.96	2.02	1.9	98.1	0.0	2.03	0.93	0.63	0.86	0.98	2808	376	2	0	1	0	0	logfile
✔	8PiJ	17683	2024-12-27	2023-06-21	2.9	3.58	2.88	3.3	0.004	0.58	0.0	0.04	18.97	0.00	2.231	3.93	3.46	3.2	96.8	0.0	0.25	0.34	0.89	2.62	3.3	0.003	0.63	0.0	0.04	16.82	0.00	2.533	3.70	3.03	2.1	97.9	0.0	0.92	1.03	0.32	0.89	2.81	2191	288	3	0	2	0	0	logfile
✔	8JTC	36640	2024-12-27	2023-06-21	3.52	3.71	3.55	3.7	0.007	0.94	0.0	0.05	14.32	0.01	2.240	7.41	0.33	3.4	96.6	0.0	1.13	0.56	0.81	1.82	3.7	0.003	0.71	0.0	0.04	14.88	0.01	2.570	9.43	4.28	2.8	97.2	0.0	2.17	0.31	0.56	0.80	1.81	2941	391	2	0	1	0	0	logfile
✔	8JTA	36638	2024-12-27	2023-06-21	3.36	3.64	3.38	3.6	0.013	1.26	0.0	0.07	14.05	0.01	2.320	7.70	2.67	5.5	94.5	0.0	-2.72	0.63	0.85	1.70	3.6	0.003	0.77	0.0	0.04	15.44	0.01	2.489	5.82	5.00	3.4	96.6	0.0	1.26	0.49	0.62	0.87	1.61	2879	386	2	0	1	0	0	logfile
✔	8JT5	36633	2024-12-27	2023-06-21	3.06	3.30	3.09	3.3	0.005	0.81	1.0	0.05	15.38	0.01	2.268	6.88	1.67	2.1	97.6	0.3	1.66	0.61	0.85	2.09	3.3	0.004	0.67	0.0	0.04	15.74	0.01	2.591	7.22	3.00	1.8	98.2	0.0	1.81	0.36	0.60	0.85	1.40	2854	384	2	0	1	0	0	logfile
✔	8JTJ	36646	2024-12-29	2023-06-21	3.08	3.34	3.25	3.3	0.003	0.66	0.0	0.04	20.10	0.01	2.112	9.23	0.00	7.6	91.9	0.5	-1.45	0.69	0.73	2.54	3.3	0.003	0.65	0.0	0.04	20.88	0.00	2.443	7.63	2.57	7.9	91.7	0.4	-0.89	0.54	0.72	0.80	2.07	11637	1042	4	145	0	0	0	logfile
✔	8JT9	36637	2024-12-27	2023-06-21	2.97	1.96	2.94	3.3	0.007	0.76	0.0	0.04	15.91	0.01	2.246	5.16	0.67	0.8	99.2	0.0	2.28	0.56	0.88	2.70	3.3	0.004	0.75	0.0	0.04	16.09	0.01	2.597	6.36	2.68	1.6	98.4	0.0	2.20	0.89	0.55	0.88	2.55	2872	384	2	0	1	0	0	logfile
✔	8JSM	36623	2024-12-31	2023-06-20	3.3	3.40	3.24	3.3	0.003	0.54	0.0	0.04	15.38	0.00	2.050	5.08	0.06	5.7	94.0	0.3	0.89	0.77	0.86	2.59	3.4	0.004	0.81	1.0	0.05	16.85	0.00	2.294	4.64	1.78	6.2	93.5	0.3	0.99	1.69	0.80	0.90	2.33	14856	1856	7	10	1	0	0	logfile
✔	8T7E	41091	2024-12-30	2023-06-20	3.08	3.40	3.07	3.3	0.005	1.09	0.0	0.06	18.22	0.01	2.288	6.80	0.69	7.6	92.3	0.1	-2.94	0.70	0.63	1.75	3.3	0.004	0.77	0.0	0.04	19.58	0.00	2.525	13.20	2.64	8.5	91.4	0.2	-1.33	0.61	0.75	0.76	2.08	14273	1706	5	36	0	0	0	logfile
✔	8T79	41088	2024-12-30	2023-06-20	3.04	3.75	3.11	3.5	0.005	1.00	0.0	0.05	18.70	0.01	2.231	5.49	0.39	2.6	97.4	0.0	-1.59	0.80	0.83	2.31	3.5	0.002	0.59	0.0	0.04	18.77	0.00	2.497	8.78	1.26	2.5	97.5	0.0	0.46	1.27	0.80	0.83	2.28	11903	1146	4	118	0	0	0	logfile
✔	8T7H	41092	2024-12-30	2023-06-20	3.3	2.38	—	3.4	0.003	0.62	0.0	0.04	13.36	0.00	2.217	7.98	0.00	4.3	95.7	0.0	0.31	0.72	0.68	2.37	3.4	0.004	0.65	0.0	0.05	15.28	0.00	2.604	6.98	2.22	4.8	95.2	0.0	0.20	0.31	0.77	0.76	2.12	13100	1794	6	0	2	0	0	logfile
✔	8JSo	36625	2024-12-28	2023-06-20	3.4	3.73	3.46	3.7	0.003	0.67	0.0	0.04	13.94	0.00	2.220	9.19	0.10	5.1	94.9	0.0	-0.64	0.65	0.80	1.60	3.7	0.003	0.70	0.0	0.04	15.86	0.00	2.529	6.41	2.13	4.8	95.2	0.0	-0.14	0.96	0.64	0.81	1.05	9045	1145	6	0	1	0	0	logfile
✔	8JSP	36626	2024-12-28	2023-06-20	3.65	3.82	3.55	3.8	0.006	0.79	0.0	0.05	14.06	0.00	2.204	13.73	0.86	5.9	94.1	0.0	-0.89	0.61	0.71	1.51	3.8	0.004	0.67	0.0	0.04	16.00	0.00	2.368	8.18	2.80	4.2	95.8	0.0	-0.09	1.06	0.63	0.72	1.55	8599	1102	6	0	1	0	0	logfile
✔	8JSN	36624	2024-12-31	2023-06-20	3.4	3.48	3.33	3.4	0.003	0.58	0.0	0.04	15.44	0.00	2.234	5.28	0.06	5.7	93.9	0.5	0.77	0.78	0.85	2.32	3.4	0.003	0.63	0.0	0.04	16.82	0.00	2.412	5.01	1.48	5.7	93.9	0.5	0.85	0.33	0.80	0.88	2.33	14856	1856	7	10	1	0	0	logfile
✔	8JSL	36622	2024-12-31	2023-06-20	2.95	3.14	2.85	3.1	0.003	0.55	0.0	0.04	14.70	0.00	2.203	3.93	0.00	6.2	93.4	0.5	0.78	0.77	0.88	2.99	3.1	0.003	0.62	1.0	0.04	16.68	0.00	2.330	4.01	1.63	5.6	93.9	0.5	1.03	0.91	0.77	0.90	2.83	14069	1751	7	10	1	0	0	logfile
✔	8T7A	41089	2024-12-31	2023-06-20	2.8	2.99	2.78	3.0	0.005	0.71	0.0	0.05	13.49	0.01	2.212	7.47	0.66	2.0	98.0	0.0	0.46	0.70	0.83	3.76	3.0	0.004	0.58	0.0	0.04	15.51	0.00	2.518	4.05	3.59	1.8	98.2	0.0	0.68	0.34	0.70	0.85	4.00	15819	2040	15	0	3	0	0	logfile
✔	8JSX	36629	2024-12-27	2023-06-20	3.16	3.39	3.12	3.4	0.005	0.84	0.0	0.06	15.28	0.01	2.440	3.46	1.00	2.1	97.9	0.0	2.26	0.64	0.87	2.00	3.4	0.003	0.66	0.0	0.04	15.87	0.01	2.448	2.77	2.67	2.4	97.6	0.0	2.47	0.29	0.63	0.87	0.95	2828	378	2	0	1	0	0	logfile

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