Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JSN	36624	2024-12-31	2023-06-20	3.4	3.48	3.33	3.4	0.003	0.58	0.0	0.04	15.44	0.00	2.234	5.28	0.06	5.7	93.9	0.5	0.77	0.78	0.85	2.32	3.4	0.003	0.63	0.0	0.04	16.82	0.00	2.412	5.01	1.48	5.7	93.9	0.5	0.85	0.33	0.80	0.88	2.33	14856	1856	7	10	1	0	0	logfile
✔	8JSL	36622	2024-12-31	2023-06-20	2.95	3.14	2.85	3.1	0.003	0.55	0.0	0.04	14.70	0.00	2.203	3.93	0.00	6.2	93.4	0.5	0.78	0.77	0.88	2.99	3.1	0.003	0.62	1.0	0.04	16.68	0.00	2.330	4.01	1.63	5.6	93.9	0.5	1.03	0.91	0.77	0.90	2.83	14069	1751	7	10	1	0	0	logfile
✔	8JSM	36623	2024-12-31	2023-06-20	3.3	3.40	3.24	3.3	0.003	0.54	0.0	0.04	15.38	0.00	2.050	5.08	0.06	5.7	94.0	0.3	0.89	0.77	0.86	2.59	3.4	0.004	0.81	1.0	0.05	16.85	0.00	2.294	4.64	1.78	6.2	93.5	0.3	0.99	1.69	0.80	0.90	2.33	14856	1856	7	10	1	0	0	logfile
✔	8PHF	17660	2024-12-28	2023-06-19	3.6	3.88	3.58	4.0	0.004	0.65	0.0	0.04	16.42	0.00	2.134	11.77	0.11	4.6	95.4	0.0	0.67	0.67	0.71	1.88	4.0	0.002	0.53	0.0	0.04	17.11	0.00	2.570	7.38	1.52	2.4	97.6	0.0	1.75	0.53	0.65	0.70	1.48	8640	1094	4	0	2	0	0	logfile
✔	8T6X	41083	2024-12-30	2023-06-19	3.08	3.82	3.16	3.4	0.004	0.72	0.0	0.04	19.03	0.01	2.015	3.89	0.26	2.2	97.8	0.0	-0.80	0.85	0.84	2.74	3.5	0.004	0.56	0.0	0.04	19.19	0.00	1.904	6.85	1.47	2.1	97.9	0.0	0.78	1.68	0.85	0.85	2.56	13443	1278	6	139	3	0	0	logfile
✔	8JS8	36616	2024-12-28	2023-06-19	2.88	3.06	—	3.1	0.003	0.61	0.0	0.04	16.36	0.00	2.188	7.56	2.28	3.1	96.9	0.0	0.62	0.62	0.84	2.55	3.1	0.003	0.54	0.0	0.04	16.54	0.00	2.425	5.47	3.19	2.8	97.2	0.0	1.06	0.35	0.61	0.84	2.79	8189	1012	4	0	6	0	0	logfile
✔	8T76	41085	2024-12-31	2023-06-19	3.42	4.21	3.53	3.5	0.005	1.02	0.0	0.05	18.99	0.01	2.278	4.93	0.32	2.5	97.5	0.0	-1.23	0.83	0.73	1.19	3.6	0.004	0.64	0.0	0.04	19.41	0.00	2.446	12.73	1.19	3.4	96.6	0.0	0.19	1.38	0.85	0.77	1.22	11049	1088	4	111	0	0	0	logfile
✔	8JS9	36617	2024-12-28	2023-06-19	3.01	3.19	—	3.2	0.004	0.55	0.0	0.04	15.24	0.00	2.136	7.19	0.23	3.2	96.8	0.0	0.68	0.62	0.85	3.09	3.2	0.003	0.48	0.0	0.04	15.16	0.00	2.553	5.16	1.59	2.0	98.0	0.0	1.10	0.30	0.58	0.84	2.96	8177	1012	4	0	5	0	0	logfile
✔	8PHE	17659	2024-12-28	2023-06-19	3.1	3.23	3.03	3.3	0.003	0.50	0.0	0.04	14.63	0.00	2.148	8.75	0.00	4.1	95.9	0.0	0.27	0.66	0.83	3.12	3.3	0.003	0.54	0.0	0.04	16.88	0.00	2.600	6.17	1.35	4.1	95.9	0.0	1.54	0.36	0.67	0.86	2.95	8914	1132	6	0	0	38	0	logfile
✔	8T6Y	41084	2024-12-29	2023-06-19	2.88	3.64	2.96	3.4	0.005	0.98	0.0	0.05	18.64	0.01	2.209	4.32	1.13	1.9	98.1	0.0	-1.21	0.81	0.84	2.74	3.3	0.003	0.60	0.0	0.04	18.97	0.00	2.512	6.85	1.43	2.6	97.4	0.0	0.98	0.53	0.81	0.85	2.62	11482	1148	4	109	0	0	0	logfile
✔	8T78	41087	2024-12-29	2023-06-19	3.02	3.65	3.08	3.5	0.007	1.07	0.0	0.06	19.85	0.01	2.181	4.81	0.51	2.5	97.5	0.0	-0.99	0.75	0.84	2.70	3.5	0.003	0.55	0.0	0.04	19.69	0.00	2.494	6.47	2.96	2.8	97.2	0.0	0.93	1.12	0.76	0.85	2.65	9561	863	4	116	0	0	0	logfile
✔	8T6U	41081	2024-12-29	2023-06-18	3.13	3.96	3.17	3.7	0.011	1.49	0.0	0.18	15.19	0.01	2.246	4.28	0.33	2.6	97.2	0.2	-3.15	0.67	0.86	2.94	3.7	0.003	0.61	0.0	0.04	14.57	0.00	2.448	7.15	1.45	2.1	97.9	0.0	2.07	1.20	0.64	0.84	2.72	8638	1032	8	0	16	36	0	logfile
✔	8T6S	41079	2024-12-29	2023-06-18	3.28	4.03	3.45	3.5	0.006	1.06	0.0	0.06	19.31	0.01	2.217	6.43	0.12	2.5	97.5	0.0	-1.45	0.80	0.77	0.85	3.5	0.003	0.64	0.0	0.04	19.82	0.00	2.528	11.90	2.20	4.1	95.9	0.0	-0.08	0.99	0.81	0.77	0.94	10400	962	4	119	0	0	0	logfile
✔	8JRR	36603	2024-12-30	2023-06-17	4.35	3.10	4.82	2.7	0.008	1.08	0.0	0.06	16.68	0.01	2.229	15.07	1.66	9.4	90.6	0.0	-4.31	0.68	0.65	—	2.1	0.003	0.80	0.0	0.05	14.36	0.01	2.086	17.25	0.00	5.1	94.9	0.0	-2.26	1.07	0.67	0.66	—	12370	1552	6	0	4	0	0	logfile
✔	8PG0	17655	2024-12-27	2023-06-17	2.97	2.85	2.96	2.9	0.022	0.94	0.0	0.06	16.43	0.01	2.211	17.04	0.80	4.2	95.6	0.1	0.35	0.56	0.78	2.40	2.8	0.003	0.65	0.0	0.04	15.81	0.00	2.598	8.73	3.51	2.7	97.3	0.0	0.76	0.44	0.55	0.79	2.40	5816	737	4	0	5	0	0	logfile
✔	8JRQ	36602	2024-12-30	2023-06-17	4.15	3.00	4.31	3.6	0.007	1.09	0.0	0.06	16.23	0.01	2.210	13.19	0.69	8.3	91.7	0.0	-4.43	0.69	0.67	—	2.1	0.003	0.74	0.0	0.04	14.13	0.00	2.043	15.21	0.00	4.2	95.8	0.0	-1.02	1.02	0.68	0.69	—	13270	1634	6	0	4	0	0	logfile
✔	8JRN	36599	2024-12-30	2023-06-17	2.6	2.12	2.69	1.7	0.004	0.51	0.0	0.04	17.31	0.00	1.840	9.52	0.26	1.7	98.3	0.0	0.37	0.80	0.80	2.85	1.7	0.003	0.57	0.0	0.04	18.06	0.00	2.489	6.83	2.09	1.6	98.4	0.0	1.27	0.50	0.80	0.81	2.95	13672	1660	6	0	4	0	0	logfile
✔	8JRP	36601	2024-12-30	2023-06-17	3.58	2.47	3.67	2.0	0.003	0.54	0.0	0.04	16.57	0.00	2.212	9.71	0.00	3.0	97.0	0.0	0.66	0.74	0.74	1.10	2.0	0.003	0.73	0.0	0.04	17.82	0.00	2.506	9.52	3.09	3.8	96.2	0.0	0.31	1.27	0.73	0.75	0.76	13630	1660	6	0	4	0	0	logfile
✔	8JRo	36600	2024-12-30	2023-06-17	3.01	2.24	3.11	2.0	0.003	0.50	0.0	0.04	16.68	0.00	2.174	7.13	0.26	2.5	97.5	0.0	-0.82	0.78	0.80	2.57	2.0	0.003	0.57	0.0	0.04	17.40	0.00	2.444	5.00	2.94	2.4	97.6	0.0	0.70	1.57	0.76	0.79	2.77	13672	1660	6	0	4	0	0	logfile
✔	8T6o	41073	2024-12-30	2023-06-16	3.1	3.88	3.19	3.5	0.009	1.23	1.0	0.06	19.52	0.01	2.217	4.26	0.41	1.3	98.7	0.0	-1.13	0.82	0.78	2.11	3.5	0.003	0.62	0.0	0.04	19.84	0.00	2.408	8.39	1.63	2.3	97.6	0.1	0.71	1.06	0.84	0.82	1.81	11904	1137	4	131	0	0	0	logfile

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