Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WUU	37860	2024-06-28	2023-10-21	3.2	4.23	3.27	3.3	0.006	0.58	0.0	0.04	20.53	0.00	2.145	6.59	0.00	2.5	97.5	0.0	1.21	0.81	0.61	2.37	3.3	0.003	0.48	0.0	0.03	20.19	0.00	2.202	9.17	1.27	1.8	98.2	0.0	1.39	0.66	0.91	0.88	2.04	14563	1313	5	181	0	0	0	logfile
✔	8UoP	42435	2024-06-27	2023-10-20	3.8	3.97	3.89	3.8	0.005	0.91	0.0	0.04	16.45	0.01	1.954	17.97	0.73	15.7	83.6	0.7	-3.60	0.18	0.15	0.40	3.9	0.003	0.64	0.0	0.04	17.20	0.00	1.949	14.94	4.40	11.8	87.9	0.3	-3.15	0.92	0.24	0.24	0.27	13188	872	2	0	0	0	6544	logfile
✔	8WU4	37850	2024-06-25	2023-10-20	3.3	3.97	3.44	3.7	0.002	0.53	0.0	0.04	13.98	0.00	2.254	7.48	0.09	0.7	99.3	0.0	1.79	0.90	0.89	1.51	3.7	0.002	0.51	0.0	0.04	14.79	0.00	2.234	9.76	0.91	0.8	99.2	0.0	2.12	0.25	0.91	0.89	1.33	54670	7364	14	0	0	0	0	logfile
✔	8WUC	37853	2024-06-27	2023-10-20	2.5	3.09	2.46	2.9	0.004	0.67	0.0	0.04	16.60	0.00	1.940	9.89	1.01	1.5	98.5	0.0	0.80	0.84	0.87	2.89	2.9	0.003	0.72	0.0	0.04	16.69	0.00	1.989	11.34	1.30	1.6	98.4	0.0	0.91	0.40	0.86	0.90	2.75	65338	8708	42	0	28	0	0	logfile
✔	8UoY	42441	2024-06-27	2023-10-20	3.4	3.52	3.51	3.4	0.016	2.25	10.0	0.11	17.12	0.02	2.532	0.83	6.89	12.1	85.3	2.6	-3.89	0.21	0.24	0.07	3.4	0.003	0.74	0.0	0.04	17.69	0.00	1.889	17.22	4.99	9.2	90.7	0.1	-3.33	0.86	0.22	0.25	0.30	13188	872	2	0	0	0	6544	logfile
✔	8WUA	37852	2024-06-24	2023-10-20	3.6	4.37	3.76	4.3	0.004	0.75	0.0	0.04	15.35	0.01	2.105	8.78	0.49	5.8	94.2	0.0	0.31	0.49	0.58	0.41	4.3	0.003	0.70	0.0	0.04	16.76	0.00	2.274	9.96	3.45	6.1	93.9	0.0	0.55	0.91	0.54	0.68	1.16	5494	675	1	0	0	0	0	logfile
✔	8WUi	37855	2024-06-28	2023-10-20	3.4	3.66	3.48	3.7	0.006	0.84	0.0	0.05	19.52	0.01	1.049	21.56	5.09	6.2	93.0	0.7	-1.15	0.56	0.68	1.43	3.7	0.003	0.63	0.0	0.04	18.19	0.00	2.135	13.89	3.07	5.2	94.4	0.4	0.09	0.67	0.54	0.74	1.34	15340	1826	8	0	14	0	0	logfile
✔	8UNJ	42406	2024-06-27	2023-10-19	3.35	3.57	3.40	3.5	0.003	0.70	0.0	0.04	14.94	0.01	2.083	8.59	3.51	2.6	97.4	0.0	-1.77	0.65	0.58	1.04	3.5	0.004	0.71	0.0	0.04	16.23	0.00	1.920	18.93	2.90	3.4	96.6	0.0	0.07	1.77	0.69	0.67	1.16	11916	1493	9	0	7	0	0	logfile
✔	8UNS	42415	2024-06-25	2023-10-19	3.4	3.73	3.46	3.7	0.004	0.77	0.0	0.05	14.48	0.00	2.332	3.61	0.00	2.1	97.9	0.0	1.05	0.65	0.86	4.13	3.7	0.002	0.47	0.0	0.04	14.71	0.00	2.200	2.90	1.49	1.6	98.4	0.0	1.23	0.29	0.67	0.87	3.26	6683	916	6	0	2	1	0	logfile
✔	8Uo3	42426	2024-06-25	2023-10-19	3.5	3.84	3.61	3.8	0.006	0.87	0.0	0.06	14.93	0.01	2.246	6.81	0.20	3.0	97.0	0.0	0.16	0.67	0.84	2.66	3.8	0.002	0.49	0.0	0.04	14.30	0.00	2.021	4.35	1.78	2.2	97.8	0.0	0.74	0.35	0.67	0.84	2.17	6650	977	6	0	3	0	0	logfile
✔	8UNP	42412	2024-06-25	2023-10-19	3.3	3.63	3.39	3.6	0.006	0.80	0.0	0.04	13.79	0.00	2.207	6.73	0.00	1.9	98.1	0.0	0.82	0.65	0.87	3.59	3.6	0.002	0.47	0.0	0.04	15.15	0.00	2.103	3.28	2.23	1.6	98.4	0.0	1.14	0.93	0.65	0.86	2.68	6559	906	6	0	2	1	0	logfile
✔	8UNW	42419	2024-06-25	2023-10-19	3.4	3.74	3.49	3.7	0.005	0.92	0.0	0.06	15.25	0.00	2.214	4.77	0.16	1.7	98.3	0.0	0.86	0.63	0.84	3.25	3.7	0.002	0.50	0.0	0.04	15.33	0.00	2.166	3.44	2.43	1.4	98.6	0.0	1.08	0.32	0.64	0.86	2.54	6647	900	6	0	2	1	0	logfile
✔	8UNZ	42422	2024-06-25	2023-10-19	3.8	4.17	3.92	4.1	0.005	0.81	0.0	0.06	13.67	0.00	2.238	4.96	0.00	2.4	97.6	0.0	1.00	0.61	0.78	1.40	4.1	0.002	0.50	0.0	0.04	14.40	0.00	2.185	4.29	0.93	1.8	98.2	0.0	0.90	0.34	0.66	0.82	1.23	6329	898	6	0	2	0	0	logfile
✔	8Uo1	42424	2024-06-25	2023-10-19	3.6	3.92	3.71	3.9	0.006	0.92	0.0	0.06	13.48	0.00	2.233	5.01	0.18	2.1	97.9	0.0	0.78	0.65	0.83	2.48	3.9	0.002	0.50	0.0	0.04	14.83	0.00	2.179	4.31	2.76	1.6	98.4	0.0	1.12	0.40	0.66	0.83	2.52	6915	1006	6	0	3	0	0	logfile
✔	8UNL	42408	2024-06-25	2023-10-19	3.3	3.59	3.34	3.6	0.005	0.68	0.0	0.04	14.03	0.00	2.228	3.82	0.00	1.6	98.4	0.0	1.49	0.66	0.88	2.99	3.6	0.003	0.47	0.0	0.04	13.80	0.00	2.245	4.06	1.32	1.8	98.2	0.0	1.43	0.91	0.68	0.89	3.04	6550	894	6	0	2	1	0	logfile
✘	8UNY	42421	2024-06-25	2023-10-19	3.6	4.06	3.81	4.0	0.006	0.97	0.0	0.06	14.64	0.01	2.255	7.64	0.00	1.7	98.3	0.0	1.32	0.63	0.80	2.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6546	912	6	0	2	0	0	logfile
✔	8UNX	42420	2024-06-25	2023-10-19	3.6	3.87	3.64	3.9	0.006	0.96	0.0	0.06	13.81	0.01	2.177	5.50	0.00	2.3	97.7	0.0	1.34	0.63	0.82	2.78	3.9	0.002	0.52	0.0	0.04	14.66	0.00	2.265	4.56	1.51	1.6	98.4	0.0	1.67	0.40	0.65	0.83	2.09	6688	923	6	0	2	0	0	logfile
✔	8UNU	42417	2024-06-25	2023-10-19	3.5	3.84	3.62	3.8	0.005	0.83	0.0	0.05	14.14	0.00	2.227	6.74	0.50	1.5	98.5	0.0	1.67	0.63	0.83	2.91	3.8	0.003	0.50	0.0	0.04	15.22	0.00	2.282	4.01	2.52	1.6	98.4	0.0	1.51	0.38	0.64	0.84	2.62	6514	890	6	0	2	0	0	logfile
✘	8Uo4	42427	2024-06-24	2023-10-19	4.0	4.28	3.99	4.2	0.004	0.72	0.0	0.04	12.00	0.00	2.322	5.46	0.00	3.2	96.8	0.0	-0.04	0.69	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5702	910	6	0	3	0	0	logfile
✔	8UNR	42414	2024-06-25	2023-10-19	3.4	3.68	3.45	3.7	0.005	0.79	0.0	0.05	13.75	0.00	1.950	4.40	0.00	2.3	97.7	0.0	0.99	0.66	0.86	3.46	3.7	0.002	0.49	0.0	0.04	14.80	0.00	2.080	3.06	2.85	2.0	98.0	0.0	1.30	0.92	0.65	0.87	2.79	6670	919	6	0	2	2	0	logfile

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