Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Uo3	42426	2024-06-25	2023-10-19	3.5	3.84	3.61	3.8	0.006	0.87	0.0	0.06	14.93	0.01	2.246	6.81	0.20	3.0	97.0	0.0	0.16	0.67	0.84	2.66	3.8	0.002	0.49	0.0	0.04	14.30	0.00	2.021	4.35	1.78	2.2	97.8	0.0	0.74	0.35	0.67	0.84	2.17	6650	977	6	0	3	0	0	logfile
✔	8UNJ	42406	2024-06-27	2023-10-19	3.35	3.57	3.40	3.5	0.003	0.70	0.0	0.04	14.94	0.01	2.083	8.59	3.51	2.6	97.4	0.0	-1.77	0.65	0.58	1.04	3.5	0.004	0.71	0.0	0.04	16.23	0.00	1.920	18.93	2.90	3.4	96.6	0.0	0.07	1.77	0.69	0.67	1.16	11916	1493	9	0	7	0	0	logfile
✔	8WU1	37849	2024-06-25	2023-10-19	3.2	3.40	3.17	3.4	0.008	0.62	0.0	0.04	11.92	0.00	2.208	7.36	0.00	4.5	95.5	0.0	-0.58	0.66	0.79	3.60	3.4	0.004	0.93	0.0	0.04	13.92	0.01	1.996	9.72	1.87	3.1	96.9	0.0	-0.10	0.35	0.66	0.79	3.27	7250	1014	5	0	1	0	0	logfile
✔	8UNV	42418	2024-06-25	2023-10-19	3.3	3.79	3.62	3.8	0.006	0.87	0.0	0.06	14.50	0.00	2.201	4.63	0.34	2.0	98.0	0.0	0.91	0.65	0.85	3.31	3.7	0.002	0.51	1.0	0.04	14.77	0.00	2.233	3.83	2.03	2.1	97.8	0.1	0.85	0.38	0.64	0.85	2.27	6591	911	6	0	2	0	0	logfile
✔	8UNR	42414	2024-06-25	2023-10-19	3.4	3.68	3.45	3.7	0.005	0.79	0.0	0.05	13.75	0.00	1.950	4.40	0.00	2.3	97.7	0.0	0.99	0.66	0.86	3.46	3.7	0.002	0.49	0.0	0.04	14.80	0.00	2.080	3.06	2.85	2.0	98.0	0.0	1.30	0.92	0.65	0.87	2.79	6670	919	6	0	2	2	0	logfile
✔	8UNT	42416	2024-06-25	2023-10-19	3.4	3.76	3.55	3.7	0.005	0.81	0.0	0.05	14.50	0.00	2.232	5.13	0.32	1.4	98.6	0.0	1.29	0.64	0.84	2.66	3.7	0.003	0.50	0.0	0.04	14.99	0.00	2.132	3.65	1.46	1.6	98.4	0.0	1.42	0.37	0.65	0.85	2.65	6712	913	6	0	2	1	0	logfile
✔	8WTZ	37847	2024-06-28	2023-10-19	3.1	3.40	3.16	3.4	0.006	0.85	2.0	0.06	18.20	0.01	1.650	12.99	2.15	1.5	98.0	0.6	0.13	0.59	0.77	1.87	3.4	0.004	0.63	0.0	0.04	17.50	0.00	2.142	9.64	2.02	2.2	97.7	0.1	1.33	1.38	0.56	0.78	1.71	14930	1778	8	0	15	0	0	logfile
✘	8UNM	42409	2024-06-25	2023-10-19	3.4	3.77	3.54	3.7	0.005	0.64	0.0	0.04	13.95	0.00	2.208	3.37	0.00	2.5	97.5	0.0	1.00	0.64	0.86	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6415	889	6	0	2	0	0	logfile
✘	8Uo4	42427	2024-06-24	2023-10-19	4.0	4.28	3.99	4.2	0.004	0.72	0.0	0.04	12.00	0.00	2.322	5.46	0.00	3.2	96.8	0.0	-0.04	0.69	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5702	910	6	0	3	0	0	logfile
✔	8Uo1	42424	2024-06-25	2023-10-19	3.6	3.92	3.71	3.9	0.006	0.92	0.0	0.06	13.48	0.00	2.233	5.01	0.18	2.1	97.9	0.0	0.78	0.65	0.83	2.48	3.9	0.002	0.50	0.0	0.04	14.83	0.00	2.179	4.31	2.76	1.6	98.4	0.0	1.12	0.40	0.66	0.83	2.52	6915	1006	6	0	3	0	0	logfile
✔	8UNP	42412	2024-06-25	2023-10-19	3.3	3.63	3.39	3.6	0.006	0.80	0.0	0.04	13.79	0.00	2.207	6.73	0.00	1.9	98.1	0.0	0.82	0.65	0.87	3.59	3.6	0.002	0.47	0.0	0.04	15.15	0.00	2.103	3.28	2.23	1.6	98.4	0.0	1.14	0.93	0.65	0.86	2.68	6559	906	6	0	2	1	0	logfile
✔	8UN0	42389	2024-06-30	2023-10-18	3.0	3.26	3.12	3.2	0.004	0.80	0.0	0.05	18.78	0.01	2.068	6.27	0.56	3.1	96.9	0.0	-1.93	0.75	0.82	1.88	3.2	0.003	0.61	0.0	0.04	18.97	0.00	1.924	9.69	2.16	2.8	97.2	0.0	0.59	0.98	0.76	0.85	2.07	21860	2647	15	47	9	0	0	logfile
✔	8UN7	42394	2024-06-28	2023-10-18	3.55	3.01	3.15	3.2	0.004	0.75	4.0	0.05	18.14	0.00	1.628	6.45	4.72	12.7	86.4	0.9	-4.64	0.71	0.83	2.45	3.2	0.002	0.61	0.0	0.04	17.80	0.00	2.185	5.62	5.42	14.5	85.5	0.0	-4.39	0.90	0.74	0.83	2.58	14296	1752	16	0	24	0	0	logfile
✔	8UN1	42390	2024-06-30	2023-10-18	3.9	4.40	4.25	4.3	0.014	1.17	0.0	0.05	16.24	0.01	2.085	21.08	0.47	5.1	94.9	0.0	-0.76	0.71	0.65	0.23	4.3	0.004	0.82	0.0	0.05	17.18	0.01	2.091	18.02	4.30	4.6	95.4	0.0	-0.11	2.91	0.75	0.75	0.54	22091	2904	21	0	0	0	0	logfile
✔	8UMP	42381	2024-06-30	2023-10-18	2.92	3.27	3.11	3.3	0.007	0.74	0.0	0.04	19.06	0.01	2.226	7.20	0.69	0.4	99.6	0.0	1.18	0.67	0.87	4.31	3.3	0.003	0.49	0.0	0.04	18.83	0.00	2.243	8.01	2.66	1.0	99.0	0.0	3.61	0.37	0.69	0.88	3.87	21432	2724	24	0	0	0	0	logfile
✔	8UMR	42382	2024-06-29	2023-10-18	4.42	5.02	4.78	4.6	0.004	0.82	0.0	0.05	12.52	0.01	2.052	27.72	0.00	2.7	97.3	0.0	-0.03	0.83	0.77	—	4.6	0.003	0.77	0.0	0.04	13.35	0.01	2.027	24.85	0.00	4.0	96.0	0.0	-0.02	1.13	0.84	0.82	—	18615	2364	21	0	0	0	0	logfile
✔	8QVW	18674	2024-06-24	2023-10-18	3.0	3.25	3.07	3.2	0.003	0.60	0.0	0.04	18.02	0.00	2.155	14.69	0.23	4.3	95.7	0.0	1.25	0.75	0.76	1.70	3.2	0.003	0.69	0.0	0.04	18.59	0.00	2.180	13.80	3.00	5.0	95.0	0.0	1.13	1.22	0.73	0.76	2.13	3918	492	2	0	0	0	0	logfile
✔	8UMW	42386	2024-06-30	2023-10-18	2.93	3.19	3.06	3.2	0.004	0.69	1.0	0.05	15.13	0.01	2.045	6.48	1.90	2.5	97.5	0.0	-1.73	0.73	0.83	2.90	3.2	0.003	0.59	0.0	0.04	17.76	0.00	1.910	9.42	2.73	2.2	97.8	0.0	0.71	1.02	0.74	0.87	2.82	21860	2647	15	47	9	0	0	logfile
✔	8UMU	42384	2024-06-30	2023-10-18	3.16	3.41	3.26	3.4	0.006	1.02	4.0	0.06	17.81	0.01	2.104	8.60	0.84	2.8	97.2	0.0	-1.89	0.71	0.71	1.14	3.4	0.004	0.69	0.0	0.04	18.00	0.00	1.929	16.88	3.92	3.6	96.4	0.0	-0.06	0.51	0.72	0.74	0.93	20521	2603	12	0	7	0	0	logfile
✔	8UMX	42387	2024-06-25	2023-10-18	4.0	5.63	3.86	4.0	0.003	0.77	0.0	0.04	17.12	0.00	2.173	17.66	0.50	5.0	94.9	0.1	-0.01	0.52	0.81	—	4.0	0.002	0.73	0.0	0.04	17.36	0.00	2.157	16.08	2.39	4.1	95.7	0.1	0.58	1.74	0.54	0.85	—	7166	906	6	0	0	0	0	logfile

• ← previous
• Page 19 of 440
• next →