Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8S3E	19691	2024-07-26	2024-02-20	2.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31585	3800	16	0	68	13	0	logfile
✘	8W2L	43751	2024-07-27	2024-02-20	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35797	4056	12	0	65	164	0	logfile
✘	8W2o	43753	2024-07-25	2024-02-20	3.49	3.88	3.52	3.8	0.007	1.00	0.0	0.05	20.62	0.01	1.255	11.79	0.41	4.3	95.5	0.2	0.04	0.78	0.81	2.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28117	2739	18	330	0	0	0	logfile
✔	8W20	43736	2024-07-21	2024-02-19	4.3	4.55	4.30	4.4	0.008	1.34	2.0	0.06	6.79	0.01	2.278	1.60	0.45	2.6	97.2	0.3	1.23	0.68	0.69	—	4.5	0.008	0.88	0.0	0.05	8.66	0.01	2.143	6.84	0.00	6.7	93.3	0.0	0.24	1.85	0.70	0.73	—	15412	2814	11	0	0	0	0	logfile
✔	8W22	43737	2024-07-18	2024-02-19	4.0	4.25	3.95	4.2	0.008	1.27	0.0	0.06	8.00	0.00	2.497	0.92	0.00	2.8	96.8	0.3	0.30	0.71	0.74	—	4.2	0.002	0.65	0.0	0.04	12.29	0.00	2.313	4.27	2.78	2.3	97.7	0.0	0.32	0.76	0.73	0.78	—	3750	629	3	0	0	0	0	logfile
✔	8YC0	39128	2024-07-18	2024-02-17	4.12	4.24	3.86	4.2	0.004	0.77	0.0	0.04	17.51	0.00	2.114	14.18	0.58	7.6	92.4	0.0	-0.95	0.50	0.65	—	4.2	0.004	0.77	0.0	0.04	13.82	0.00	2.189	14.18	0.00	8.8	91.2	0.0	-0.63	0.74	0.61	0.73	—	4635	583	9	0	1	0	0	logfile
✔	8W15	43715	2024-07-23	2024-02-15	2.72	3.63	3.61	3.3	0.003	0.57	1.0	0.04	16.09	0.00	2.133	6.71	1.36	2.9	97.1	0.0	0.92	0.87	0.89	2.90	3.3	0.002	0.59	0.0	0.04	16.52	0.00	2.191	7.97	1.95	2.8	97.2	0.0	2.28	0.89	0.86	0.87	2.09	21207	2710	2	0	0	0	0	logfile
✔	8W12	43714	2024-07-25	2024-02-14	3.5	3.04	3.63	3.5	0.003	0.70	0.0	0.05	14.49	0.01	2.219	5.77	0.00	3.0	97.0	0.0	-0.33	0.84	0.82	1.93	3.3	0.004	0.74	0.0	0.04	16.53	0.00	2.109	10.78	3.26	3.8	96.2	0.0	0.29	0.50	0.85	0.83	1.85	29248	3628	6	0	0	0	0	logfile
✔	8YBE	39117	2024-07-18	2024-02-13	2.3	2.50	2.34	2.5	0.006	0.89	0.0	0.05	15.84	0.01	2.236	18.77	2.34	0.0	100.0	0.0	1.36	0.67	0.82	5.54	2.5	0.004	0.63	0.0	0.04	16.54	0.00	2.202	12.22	2.01	2.4	97.6	0.0	1.42	0.30	0.67	0.83	5.63	3110	370	3	0	2	197	0	logfile
✔	8RZL	19608	2024-07-19	2024-02-12	2.65	3.69	2.75	3.2	0.012	1.57	0.0	0.10	15.37	0.01	1.332	1.93	3.21	5.0	95.0	0.0	0.97	0.89	0.92	6.37	3.2	0.003	0.66	0.0	0.04	11.36	0.00	2.255	4.39	1.92	2.4	97.6	0.0	1.12	0.96	0.87	0.90	5.16	8895	915	35	0	155	0	0	logfile
✔	8VZN	43683	2024-07-18	2024-02-12	2.77	2.94	2.79	2.9	0.015	1.53	0.0	0.08	15.04	0.04	2.330	3.53	2.81	4.9	95.1	0.0	-3.34	0.61	0.85	3.75	2.9	0.003	0.60	0.0	0.04	15.68	0.00	2.246	6.53	1.60	2.2	97.8	0.0	1.72	0.96	0.61	0.87	3.57	4656	596	4	0	1	0	0	logfile
✔	8VZo	43684	2024-07-18	2024-02-12	2.49	2.66	2.50	2.7	0.013	1.82	1.0	0.10	14.97	0.03	2.347	6.25	3.67	4.0	96.0	0.0	-2.36	0.56	0.81	3.92	2.6	0.004	0.60	0.0	0.04	15.24	0.00	2.196	5.83	1.93	2.0	98.0	0.0	2.12	0.51	0.67	0.88	4.24	4796	615	4	0	1	0	0	logfile
✔	8VYG	43660	2024-07-18	2024-02-08	3.1	3.18	3.20	3.3	0.010	1.22	0.0	0.07	10.29	0.00	2.515	0.48	0.30	2.9	97.1	0.0	0.68	0.51	0.68	2.78	3.2	0.002	0.62	0.0	0.04	15.46	0.00	2.184	6.25	2.39	2.9	97.1	0.0	0.30	1.46	0.54	0.77	2.47	3204	416	4	0	1	0	0	logfile
✔	8VYF	43659	2024-07-19	2024-02-08	3.2	3.37	3.23	3.4	0.010	1.27	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.003	0.60	0.0	0.04	12.36	0.00	2.253	3.38	2.12	3.1	96.9	0.0	0.96	0.53	0.67	0.87	5.21	5132	715	9	0	12	0	0	logfile
✔	8VYE	43658	2024-07-26	2024-02-08	2.7	2.90	2.87	2.9	0.009	1.31	0.0	0.08	8.86	0.01	2.401	0.76	0.00	2.5	97.5	0.0	0.78	0.73	0.78	4.26	2.9	0.003	0.59	0.0	0.05	11.51	0.00	2.253	2.66	1.79	1.4	98.6	0.0	1.40	0.96	0.72	0.80	3.74	31140	5178	24	0	57	0	0	logfile
✔	8VXY	43643	2024-07-20	2024-02-06	3.19	3.47	3.32	3.5	0.003	0.81	0.0	0.06	16.14	0.00	2.215	14.40	0.00	4.8	95.2	0.0	-0.15	0.61	0.62	1.03	3.5	0.005	0.70	0.0	0.05	18.33	0.00	2.095	19.61	0.94	6.2	93.8	0.0	-0.75	1.40	0.66	0.69	0.98	12324	1406	5	62	1	0	0	logfile
✘	8Y93	39068	2024-07-19	2024-02-06	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9055	1130	3	0	3	0	0	logfile
✘	8Y95	39070	2024-07-19	2024-02-06	3.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9018	1124	4	0	6	0	0	logfile
✔	8Y94	39069	2024-07-19	2024-02-06	3.29	3.74	3.42	3.7	0.002	0.46	0.0	0.03	9.27	0.00	2.295	5.05	3.15	2.1	97.9	0.0	-1.50	0.52	0.64	1.26	3.7	0.004	0.70	0.0	0.04	15.08	0.00	2.170	12.53	3.78	3.4	96.6	0.0	0.85	1.15	0.59	0.79	1.00	9032	1130	2	0	0	0	0	logfile
✔	8VXQ	43629	2024-07-26	2024-02-05	3.1	3.71	3.15	3.6	0.004	0.71	1.0	0.03	18.79	0.01	2.202	3.22	0.37	6.7	93.2	0.0	1.68	0.65	0.78	1.03	3.6	0.003	0.58	0.0	0.03	19.12	0.00	2.172	7.00	3.48	6.6	93.2	0.2	2.44	0.37	0.63	0.78	1.02	31572	4158	18	0	0	0	0	logfile

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