Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7DBH	30631	2024-02-15	2020-10-20	3.6	4.18	—	3.4	0.007	0.74	1.0	0.05	28.57	0.00	1.451	11.99	0.17	3.2	96.8	0.0	0.54	0.91	0.85	2.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10631	697	10	252	0	0	0	logfile
✘	7AoD	11841	2024-02-14	2020-10-14	4.5	4.61	—	4.5	0.007	0.89	0.0	0.05	14.84	0.01	1.858	27.36	1.95	10.7	88.9	0.3	-4.20	0.79	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59256	7466	34	0	12	0	0	logfile
✘	7Ao8	11837	2024-02-15	2020-10-14	4.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-3.46	—	—	—	3.7	0.004	0.80	0.0	0.04	14.37	0.00	1.815	29.49	0.00	7.2	92.8	0.0	-1.40	—	0.85	0.74	—	10905	1350	9	0	8	0	0	logfile
✘	7D8X	30614	2024-02-15	2020-10-11	2.6	2.78	—	2.7	0.010	1.13	0.0	0.06	14.38	0.01	2.221	3.29	0.18	5.1	94.9	0.0	-3.36	0.70	0.86	4.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10928	1314	13	0	28	0	0	logfile
✘	7AM2	11821	2024-02-21	2020-10-07	3.4	3.52	—	3.4	0.009	0.95	43.0	0.07	21.09	0.01	1.157	23.90	8.65	15.0	84.3	0.7	-5.47	0.64	0.76	1.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139523	15384	80	839	42	0	0	logfile
✘	7D74	30601	2024-02-22	2020-10-02	3.1	2.42	—	3.0	0.009	1.38	1.0	0.08	19.73	0.01	1.922	10.36	8.87	4.8	94.8	0.4	-2.46	0.51	0.65	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35353	4503	24	0	12	0	0	logfile
✘	7D73	30600	2024-02-22	2020-10-02	3.0	2.48	—	2.7	0.011	1.23	7.0	0.07	19.93	0.01	1.302	10.00	10.36	6.3	93.4	0.3	-3.01	0.55	0.71	2.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35292	4495	24	0	12	0	0	logfile
✘	7D72	30599	2024-02-22	2020-10-02	3.4	3.58	—	3.5	0.009	1.23	4.0	0.07	17.32	0.01	1.640	10.15	8.56	4.9	94.8	0.2	-2.44	0.74	0.83	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35458	4505	27	0	15	6	0	logfile
✘	7AKJ	11813	2024-02-21	2020-10-01	3.8	3.63	—	3.6	0.005	0.89	0.0	0.07	16.70	0.01	2.143	6.11	0.09	2.9	97.1	0.0	-1.03	0.79	0.79	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31812	3930	30	0	96	0	0	logfile
✘	7AiN	11799	2024-02-16	2020-09-28	3.2	3.71	3.29	3.6	0.011	0.93	0.0	0.06	13.50	0.01	2.282	9.81	0.00	2.8	97.1	0.1	-1.55	0.66	0.78	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13904	1808	6	0	8	0	0	logfile
✘	7K8A	22724	2024-02-15	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5513	723	1	0	0	0	0	logfile
✘	7AHH	11786	2024-02-15	2020-09-24	3.5	3.59	3.55	3.6	0.008	0.97	0.0	0.07	14.62	0.00	2.213	14.34	0.23	7.6	92.4	0.0	-1.56	0.70	0.79	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12125	1562	7	0	4	0	0	logfile
✘	7AHE	11784	2024-02-14	2020-09-24	4.1	4.22	4.11	4.1	0.007	1.01	0.0	0.08	13.74	0.00	2.205	16.70	0.45	9.6	90.4	0.0	-5.40	0.69	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10060	1308	5	0	1	0	0	logfile
✘	7AGG	11779	2024-02-14	2020-09-22	3.3	3.68	—	3.6	0.007	0.79	0.0	0.05	13.16	0.01	1.980	6.95	0.00	4.2	95.8	0.0	-1.18	0.83	0.80	3.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8252	1056	5	0	0	0	0	logfile
✘	7AG8	11776	2024-02-15	2020-09-21	2.68	3.30	2.85	3.2	0.005	0.65	0.0	0.04	13.13	0.00	2.220	6.49	0.37	4.2	95.7	0.1	-0.60	0.65	0.79	4.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10922	1417	4	0	2	0	0	logfile
✘	7D3S	30566	2024-02-14	2020-09-20	2.9	2.73	2.75	2.8	0.004	0.64	0.0	0.04	13.88	0.00	2.237	10.24	0.00	4.0	96.0	0.0	-2.28	0.56	0.75	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8338	1048	6	0	0	0	0	logfile
✘	7AFi	11766	2024-02-22	2020-09-19	3.53	4.65	3.55	2.4	0.011	0.99	8.0	0.06	24.24	0.01	1.836	33.77	0.00	9.0	91.0	0.0	-2.95	0.91	0.89	0.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33803	1387	14	1066	46	0	0	logfile
✘	7AFA	11758	2024-02-17	2020-09-19	2.95	3.82	2.97	2.9	0.008	0.80	6.0	0.05	21.60	0.02	1.456	11.42	0.00	2.9	97.1	0.0	-1.10	0.86	0.88	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18482	1101	11	456	26	0	0	logfile
✘	7K57	22676	2024-02-17	2020-09-16	3.7	4.17	3.78	4.0	0.007	1.03	0.0	0.06	15.81	0.01	2.107	6.10	0.94	5.9	94.1	0.0	-4.46	0.85	0.83	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70104	8892	12	0	0	0	0	logfile
✘	7K45	22660	2024-02-13	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.42	0.0	0.08	9.35	0.01	2.568	0.35	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3038	419	4	0	2	0	0	logfile

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