Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5VFQ	8664	2024-02-22	2017-04-09	4.2	4.40	—	4.2	0.008	1.31	5.0	0.07	11.88	0.01	2.018	11.49	0.81	10.0	89.5	0.6	-4.38	0.71	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	101134	13040	51	0	5	0	0	logfile
✘	5NiK	3652	2024-02-22	2017-03-24	3.3	3.47	—	3.4	0.010	1.29	0.0	0.04	10.30	0.01	0.941	22.00	0.24	6.4	91.6	1.9	-1.88	0.64	0.59	1.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35215	4582	11	0	0	0	0	logfile
✘	5X1G	6701	2024-02-13	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✘	5UJZ	8561	2024-02-22	2017-01-19	4.8	5.22	—	5.1	0.010	1.28	0.0	0.06	12.10	0.01	2.072	3.55	0.16	7.6	92.3	0.1	-3.77	0.84	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33948	2196	21	0	33	0	16401	logfile
✘	5UK2	8564	2024-02-22	2017-01-19	4.8	4.64	—	4.6	0.012	1.36	0.0	0.07	12.49	0.01	2.083	3.96	0.16	8.7	91.1	0.1	-4.11	0.80	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33948	2196	21	0	33	0	16401	logfile
✘	5UK1	8563	2024-02-22	2017-01-19	4.8	7.30	—	7.0	0.010	1.28	0.0	0.07	12.04	0.01	2.106	4.22	0.16	8.1	91.8	0.1	-3.97	0.88	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33948	2196	21	0	33	0	16401	logfile
✘	5UK0	8562	2024-02-22	2017-01-19	4.8	5.42	—	5.2	0.010	1.26	0.0	0.06	12.08	0.01	2.096	3.58	0.16	8.3	91.6	0.1	-3.58	0.84	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33948	2196	21	0	33	0	16401	logfile
✘	5UCY	8539	2024-02-19	2016-12-22	4.6	4.99	—	4.6	0.011	1.21	3.0	0.06	13.21	0.01	0.244	89.25	0.68	11.3	88.3	0.5	-4.47	0.50	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24990	2610	12	3	6	0	4452	logfile
✘	5MMi	3531	2024-02-21	2016-12-10	3.2	3.30	—	3.2	0.008	1.15	0.0	0.05	23.87	0.01	1.753	7.92	9.25	5.3	94.4	0.3	-3.29	0.89	0.88	1.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	95397	3769	56	3027	503	0	0	logfile
✘	5WSG	6684	2024-02-19	2016-12-07	4.0	4.08	—	4.0	0.015	1.47	46.0	0.08	16.80	0.01	1.580	27.87	1.96	12.5	85.9	1.6	-4.87	0.46	0.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76730	8620	51	376	883	0	0	logfile
✘	5H64	6668	2024-02-24	2016-11-10	4.4	3.65	—	3.4	0.011	1.57	0.0	0.07	11.97	0.01	1.144	72.33	0.80	17.3	80.2	2.4	-5.94	0.74	0.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45252	6430	6	0	0	0	0	logfile
✘	5H1Q	9570	2024-02-19	2016-10-11	3.3	3.90	—	4.0	0.008	1.04	0.0	0.06	11.65	0.00	1.998	16.22	0.31	12.6	86.8	0.6	-5.07	0.44	0.69	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23784	2888	8	0	0	0	0	logfile
✘	5TAY	8389	2024-02-16	2016-09-10	4.6	4.71	4.77	4.5	0.004	0.86	4.0	0.05	9.86	0.01	1.374	4.89	0.46	10.4	89.4	0.2	-4.90	0.75	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121276	13500	12	0	3712	0	0	logfile
✘	5TAV	8386	2024-02-16	2016-09-10	4.8	4.96	5.58	4.7	0.004	0.89	4.0	0.05	9.84	0.01	1.373	4.75	0.39	9.7	90.1	0.2	-4.80	0.77	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✘	5TAT	8384	2024-02-16	2016-09-10	4.8	5.01	5.79	4.8	0.004	0.87	0.0	0.05	9.86	0.01	1.373	4.75	0.35	9.4	90.5	0.1	-4.89	0.78	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✘	5GW5	9541	2024-02-15	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	5GW4	9540	2024-02-15	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	5GUP	9539	2024-02-13	2016-08-30	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109982	13895	107	0	77	0	0	logfile
✘	5T4D	8354	2024-02-16	2016-08-29	3.0	3.12	2.96	3.1	0.010	0.81	0.0	0.05	9.48	0.00	2.120	12.34	0.26	4.4	95.6	0.0	-2.69	0.75	0.79	4.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14876	1852	8	0	12	0	0	logfile
✘	5LMU	4080	2024-02-13	2016-08-01	4.0	4.12	4.00	4.0	0.008	1.44	43.0	0.12	27.09	0.02	1.289	21.15	25.30	12.0	84.2	3.8	-2.57	0.73	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55195	2550	29	1612	82	0	0	logfile

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