Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8iN8	35592	2024-06-25	2023-03-08	3.0	3.19	3.04	3.2	0.003	0.62	0.0	0.04	21.50	0.01	1.950	10.16	3.63	6.1	93.7	0.1	-0.30	0.71	0.75	1.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6663	724	5	47	1	0	0	logfile
✘	8GED	29966	2024-06-25	2023-03-06	3.5	3.89	3.70	3.9	0.003	0.48	0.0	0.04	12.40	0.00	2.251	7.07	0.00	1.4	98.6	0.0	1.82	0.71	0.78	2.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6505	946	5	0	1	0	0	logfile
✘	8iLR	35543	2024-06-26	2023-03-04	3.05	3.24	3.08	3.3	0.003	0.45	1.0	0.04	15.95	0.00	1.967	27.72	0.35	4.5	95.5	0.1	0.10	0.73	0.82	2.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10374	1253	3	0	1	7	0	logfile
✘	8GCE	29932	2024-06-27	2023-03-01	3.12	3.35	3.13	3.5	0.007	1.15	15.0	0.08	16.74	0.02	1.584	31.98	3.38	9.6	88.8	1.6	-2.30	0.63	0.57	1.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12343	1588	7	0	17	0	0	logfile
✘	8GA8	29892	2024-06-30	2023-02-22	3.5	3.70	3.49	3.7	0.003	0.54	0.0	0.04	17.43	0.00	2.028	11.33	0.33	2.6	97.4	0.0	0.98	0.70	0.69	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22011	2675	12	0	2	0	0	logfile
✘	8G7N	29817	2024-06-27	2023-02-16	2.7	2.83	2.69	2.8	0.003	0.57	0.0	0.05	13.36	0.00	2.109	2.56	0.20	1.0	99.0	0.0	1.66	0.77	0.85	3.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	66108	8778	42	0	42	0	0	logfile
✘	8iES	35392	2024-06-25	2023-02-15	3.73	4.01	3.68	4.0	0.003	1.16	0.0	0.04	13.70	0.00	2.268	5.19	0.00	6.0	94.0	0.0	-3.84	0.60	0.66	0.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7965	1026	2	0	3	0	0	logfile
✘	8G4o	29728	2024-06-29	2023-02-10	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17353	2094	20	0	39	0	0	logfile
✘	8iBZ	35350	2024-06-26	2023-02-10	3.04	3.25	3.07	3.1	0.003	0.60	0.0	0.04	23.46	0.00	2.190	9.49	0.29	4.3	95.6	0.1	0.68	0.73	0.74	1.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10273	817	3	180	1	0	0	logfile
✘	8iAM	35310	2024-06-30	2023-02-08	3.1	3.24	3.09	3.2	0.004	0.72	0.0	0.05	13.96	0.00	2.098	5.51	0.27	5.6	94.1	0.3	-0.12	0.72	0.86	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20192	2536	12	0	4	0	0	logfile
✘	8i9G	35270	2024-06-25	2023-02-06	3.2	3.67	3.09	3.6	0.005	0.67	0.0	0.05	16.41	0.00	2.213	4.97	4.97	6.6	93.4	0.0	-3.28	0.72	0.83	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6507	778	9	0	13	0	0	logfile
✘	8CE7	16600	2024-06-26	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.71	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✘	8FYi	29579	2024-06-28	2023-01-26	3.4	3.73	3.49	3.7	0.005	0.68	0.0	0.05	16.64	0.00	2.200	10.41	0.18	3.2	96.8	0.0	-1.26	0.74	0.87	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15364	1844	19	0	56	0	0	logfile
✘	8CBN	16546	2024-06-27	2023-01-25	3.34	3.92	3.27	3.7	0.008	0.72	0.0	0.04	25.79	0.01	0.876	6.35	2.28	4.8	95.2	0.0	-5.72	0.71	0.78	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13669	939	12	300	0	0	0	logfile
✘	8CAN	16531	2024-06-30	2023-01-24	1.93	1.75	1.93	1.9	0.002	0.40	0.0	0.04	9.00	0.00	2.041	2.66	0.16	0.9	99.1	0.0	1.63	0.70	0.81	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71225	4104	21	0	27	3170	33930	logfile
✘	8FWK	29511	2024-06-26	2023-01-22	3.5	4.25	3.71	4.0	0.005	1.07	2.0	0.06	12.40	0.01	2.289	13.87	1.29	11.6	87.2	1.2	-4.60	0.66	0.72	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9462	1194	2	0	0	0	0	logfile
✘	8BQV	16188	2024-06-25	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.01	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	8BQW	16189	2024-06-29	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✘	8FU6	29453	2024-06-25	2023-01-16	2.9	3.13	2.94	3.2	0.002	0.60	0.0	0.04	12.46	0.00	2.199	3.83	0.00	2.6	97.4	0.0	0.07	0.58	0.80	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8834	1112	6	0	0	0	0	logfile
✘	8HZN	35089	2024-06-26	2023-01-09	3.25	2.62	3.24	3.1	0.002	0.49	0.0	0.04	8.51	0.00	2.182	6.40	3.12	5.2	94.7	0.1	-3.99	0.78	0.77	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10200	1330	4	0	2	0	0	logfile

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