Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8HZC	35088	2024-06-24	2023-01-08	3.2	3.16	2.79	3.3	0.002	0.51	0.0	0.05	13.53	0.00	2.497	11.14	0.00	11.3	88.7	0.0	-5.03	0.39	0.85	4.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3108	450	6	0	0	0	0	logfile
✘	8FQD	29384	2024-06-25	2023-01-06	3.01	2.62	3.02	3.0	0.015	0.73	0.0	0.06	17.60	0.00	2.264	6.54	0.11	3.3	96.7	0.0	-0.68	0.64	0.83	1.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8384	1064	14	0	4	2	0	logfile
✘	8FQG	29387	2024-06-25	2023-01-06	3.01	2.41	2.83	3.0	0.015	0.73	0.0	0.06	17.67	0.00	2.233	8.45	0.22	2.3	97.7	0.0	-0.50	0.62	0.85	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8392	1064	16	0	4	10	0	logfile
✘	8FQ2	29375	2024-06-25	2023-01-05	3.14	2.91	2.99	3.1	0.015	0.76	0.0	0.06	15.95	0.00	2.235	9.44	0.67	4.7	95.3	0.0	-0.58	0.56	0.71	1.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8390	1064	12	0	4	0	0	logfile
✘	8FoB	29344	2024-06-30	2022-12-30	2.71	2.96	2.77	3.0	0.024	1.57	0.0	0.54	21.84	0.01	2.073	8.34	0.39	8.3	91.7	0.0	-5.44	0.60	0.72	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20390	2376	12	0	46	52	0	logfile
✘	8FoA	29343	2024-06-30	2022-12-30	2.66	2.96	2.81	2.9	0.023	1.52	0.0	0.53	22.53	0.01	2.298	7.30	0.42	5.2	94.7	0.0	-5.28	0.66	0.84	4.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21287	2448	8	0	53	0	0	logfile
✘	8HWE	35055	2024-06-29	2022-12-29	3.3	3.47	3.28	3.5	0.003	0.61	0.0	0.04	17.84	0.00	1.956	10.09	0.62	8.5	91.5	0.0	-1.52	0.72	0.80	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17247	2112	12	0	11	0	0	logfile
✘	8HWG	35057	2024-06-29	2022-12-29	3.0	3.09	2.85	3.0	0.004	0.66	0.0	0.04	18.54	0.00	1.832	7.63	4.33	6.0	93.9	0.0	-1.90	0.76	0.87	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18110	2209	13	6	12	0	0	logfile
✘	8FJ5	29215	2024-06-29	2022-12-19	2.9	3.03	2.92	3.0	0.004	0.62	0.0	0.04	11.79	0.00	2.391	3.19	0.00	3.4	96.6	0.0	1.51	0.55	0.86	3.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18980	2660	20	0	0	0	0	logfile
✘	8HRL	34977	2024-06-25	2022-12-15	2.8	3.03	2.84	3.1	0.004	0.73	0.0	0.05	18.12	0.01	2.124	7.19	1.59	4.7	95.3	0.0	-1.16	0.64	0.73	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6412	791	2	0	0	0	0	logfile
✘	8HRN	34979	2024-06-24	2022-12-15	3.9	4.18	3.98	4.0	0.005	0.91	0.0	0.05	17.07	0.01	2.080	24.49	0.95	3.4	96.6	0.0	-1.15	0.76	0.69	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4870	597	1	0	0	0	0	logfile
✘	8C02	16353	2024-06-24	2022-12-15	4.09	4.26	4.03	4.2	0.004	0.83	0.0	0.04	13.16	0.01	2.225	19.86	0.44	4.1	95.9	0.0	1.51	0.58	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4242	549	2	0	0	0	0	logfile
✘	8BX5	16308	2024-06-27	2022-12-07	4.2	4.41	4.00	4.3	0.003	0.78	1.0	0.06	14.22	0.01	2.218	14.11	0.63	3.9	96.1	0.0	-0.69	0.60	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12527	1630	13	0	4	4	0	logfile
✘	8BVR	16269	2024-06-24	2022-12-05	3.52	4.00	3.61	3.9	0.005	0.72	0.0	0.04	17.01	0.01	2.178	12.22	0.19	4.6	95.4	0.0	0.64	0.62	0.78	1.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4806	617	3	0	3	0	0	logfile
✘	8HMP	34902	2024-06-25	2022-12-05	2.77	2.61	2.82	2.8	0.005	0.92	0.0	0.06	14.08	0.01	2.228	5.94	0.00	3.4	96.6	0.0	-0.73	0.63	0.79	3.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8319	1045	6	0	1	0	0	logfile
✘	8FDU	29014	2024-06-27	2022-12-04	3.3	3.75	3.30	3.6	0.005	0.83	0.0	0.05	13.46	0.00	2.212	12.19	0.21	4.1	95.9	0.1	-0.29	0.66	0.78	1.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13193	1633	4	0	2	0	0	logfile
✘	8FD6	29003	2024-06-30	2022-12-02	2.9	3.18	2.95	3.2	0.007	0.74	0.0	0.05	14.43	0.00	1.835	8.75	0.16	3.8	96.2	0.0	0.39	0.64	0.73	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22170	2747	1	0	6	0	0	logfile
✘	8HLA	34859	2024-06-30	2022-11-29	2.81	2.68	2.73	2.8	0.011	0.96	0.0	0.06	14.25	0.01	2.027	19.94	0.09	8.2	91.7	0.1	-2.33	0.62	0.83	3.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20868	2580	20	0	12	0	0	logfile
✘	8HL4	34869	2024-06-24	2022-11-28	4.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✘	8HL1	34866	2024-06-24	2022-11-28	3.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile

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