Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8F4R	28857	2024-08-08	2022-11-11	3.06	3.36	3.18	3.3	0.004	0.56	0.0	0.04	11.50	0.00	2.212	7.54	3.22	1.2	98.7	0.0	1.85	0.75	0.81	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23675	3097	4	0	1	0	0	logfile
✘	8HFi	34721	2024-08-02	2022-11-10	2.5	2.71	2.52	2.7	0.003	0.63	0.0	0.04	15.56	0.00	2.008	3.64	1.08	2.2	97.8	0.0	1.51	0.75	0.88	3.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4443	548	2	0	2	39	0	logfile
✘	8HEG	34690	2024-08-09	2022-11-08	3.2	3.40	3.27	3.4	0.004	0.70	0.0	0.04	15.87	0.01	0.403	16.75	1.09	7.1	92.6	0.3	-1.33	0.69	0.78	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26595	3385	20	0	0	0	0	logfile
✘	8BJA	16087	2024-08-09	2022-11-03	3.0	2.93	3.30	3.3	0.004	0.81	0.0	0.04	17.12	0.01	2.169	11.25	3.67	5.4	94.4	0.2	-0.80	0.78	0.75	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25204	3201	4	0	6	0	0	logfile
✘	8BHW	16071	2024-08-08	2022-11-01	3.2	4.17	3.28	3.6	0.003	0.56	0.0	0.03	16.12	0.00	2.188	6.49	0.18	3.2	96.8	0.0	3.05	0.76	0.83	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21240	2656	8	0	0	0	0	logfile
✘	8HC5	34652	2024-08-05	2022-11-01	3.43	3.51	3.37	3.6	0.002	0.53	0.0	0.04	15.56	0.00	2.249	5.34	0.00	4.0	96.0	0.0	-0.79	0.60	0.59	1.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11400	1493	6	0	1	0	0	logfile
✘	8BHo	16063	2024-08-09	2022-10-31	2.93	3.61	2.99	3.4	0.002	0.44	0.0	0.04	7.45	0.01	2.092	2.60	0.00	0.9	99.1	0.0	2.52	0.75	0.81	4.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27190	1680	10	0	10	0	13415	logfile
✘	8BHB	16051	2024-08-09	2022-10-30	2.54	3.17	2.64	3.0	0.003	0.42	0.0	0.04	7.20	0.02	2.149	2.09	0.00	0.9	99.1	0.0	2.13	0.73	0.88	5.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27250	1680	15	0	10	65	13415	logfile
✘	8H8J	34549	2024-08-03	2022-10-23	3.2	2.26	3.27	2.1	0.003	0.66	0.0	0.04	10.44	0.00	1.939	9.85	2.59	2.3	97.6	0.1	-0.78	0.71	0.72	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8842	1139	6	0	5	0	0	logfile
✘	8H86	34530	2024-08-03	2022-10-21	2.56	2.71	2.58	2.7	0.014	1.56	0.0	0.08	18.47	0.03	2.296	6.79	0.45	4.0	96.0	0.0	-0.67	0.46	0.73	5.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7080	765	6	0	48	63	0	logfile
✘	8H7Z	34526	2024-08-02	2022-10-21	3.07	3.23	3.02	3.2	0.003	0.63	0.0	0.04	12.59	0.00	2.210	6.35	0.00	3.4	96.6	0.0	-0.04	0.60	0.72	2.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4885	631	3	0	0	0	0	logfile
✘	8H87	34531	2024-08-03	2022-10-21	2.53	2.73	2.50	2.7	0.011	1.55	0.0	0.08	18.83	0.02	2.300	4.49	0.91	2.3	97.7	0.0	-1.32	0.58	0.79	4.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7083	777	6	0	48	147	0	logfile
✘	8BC3	15961	2024-08-06	2022-10-14	2.1	2.00	2.14	2.2	0.014	1.93	0.0	0.10	18.17	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.84	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16880	2170	30	0	10	500	0	logfile
✘	8H4L	34480	2024-08-03	2022-10-10	3.07	2.31	3.09	3.0	0.007	0.90	0.0	0.05	12.79	0.01	2.069	4.07	0.23	4.4	95.6	0.0	-0.34	0.77	0.81	3.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8171	1059	6	0	1	0	0	logfile
✘	8H3H	34468	2024-08-09	2022-10-08	3.15	3.23	3.11	3.2	0.007	0.92	1.0	0.05	16.37	0.01	1.854	12.44	3.65	9.2	90.3	0.4	-4.15	0.80	0.87	3.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25408	3174	10	0	6	0	0	logfile
✘	8EP0	28494	2024-08-09	2022-10-04	4.9	6.49	5.04	5.3	0.004	0.79	0.0	0.05	12.19	0.01	2.237	11.79	0.00	3.6	96.4	0.0	0.06	0.70	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24408	3372	8	0	0	0	0	logfile
✘	8EoF	28374	2024-08-09	2022-10-03	3.3	3.98	3.27	3.6	0.005	0.69	0.0	0.05	22.49	0.01	1.961	5.21	17.49	9.6	89.7	0.8	-3.14	0.86	0.85	2.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25608	3031	10	102	3	0	0	logfile
✘	8H0Y	34418	2024-08-09	2022-09-30	2.85	3.06	2.88	3.0	0.008	0.85	0.0	0.06	13.44	0.01	2.274	2.60	0.00	3.2	96.8	0.0	-1.19	0.81	0.86	3.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24999	3094	6	0	52	0	0	logfile
✘	8H10	34420	2024-08-09	2022-09-30	2.99	3.22	3.06	3.2	0.008	0.90	0.0	0.05	12.96	0.01	2.304	2.85	0.64	3.1	96.9	0.0	-1.07	0.81	0.85	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24882	3078	9	0	54	0	0	logfile
✘	8H14	34424	2024-08-09	2022-09-30	3.39	3.39	3.33	3.4	0.005	0.95	6.0	0.06	13.87	0.01	2.177	2.50	1.35	3.6	96.4	0.0	-0.84	0.78	0.84	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24750	3087	6	0	45	0	0	logfile

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