Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8H7Z	34526	2024-10-09	2022-10-21	3.07	3.23	3.02	3.2	0.003	0.63	0.0	0.04	12.59	0.00	2.210	6.35	0.00	3.4	96.6	0.0	-0.04	0.60	0.72	2.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4885	631	3	0	0	0	0	logfile
✘	8H87	34531	2024-10-10	2022-10-21	2.53	2.73	2.50	2.7	0.011	1.55	0.0	0.08	18.83	0.02	2.300	4.49	0.91	2.3	97.7	0.0	-1.32	0.58	0.79	4.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7083	777	6	0	48	147	0	logfile
✘	8H7G	34520	2024-10-10	2022-10-20	3.7	3.18	3.58	3.3	0.002	0.57	0.0	0.04	12.37	0.00	2.182	5.83	0.00	5.3	94.6	0.0	-1.27	0.60	0.60	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52609	6574	14	0	19	0	0	logfile
✘	8H69	34497	2024-10-14	2022-10-16	3.7	3.79	3.34	3.7	0.009	1.12	0.0	0.06	12.85	0.01	1.917	7.93	1.52	7.5	92.4	0.2	-4.98	0.77	0.74	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18028	2153	5	37	0	0	0	logfile
✘	8BC3	15961	2024-10-14	2022-10-14	2.1	2.00	2.14	2.2	0.014	1.93	0.0	0.10	18.17	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.84	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16880	2170	30	0	10	500	0	logfile
✘	8ES9	28572	2024-10-13	2022-10-13	3.25	3.52	3.21	3.4	0.005	0.70	0.0	0.05	14.59	0.00	2.176	6.90	0.00	5.4	94.6	0.1	0.26	0.71	0.84	2.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11844	1459	17	0	14	0	0	logfile
✘	8H4L	34480	2024-10-10	2022-10-10	3.07	2.31	3.09	3.0	0.007	0.90	0.0	0.05	12.79	0.01	2.069	4.07	0.23	4.4	95.6	0.0	-0.34	0.77	0.81	3.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8171	1059	6	0	1	0	0	logfile
✘	8B9K	15934	2024-10-13	2022-10-06	4.04	6.74	4.22	4.3	0.004	1.15	0.0	0.04	15.72	0.00	2.160	17.25	5.04	10.5	88.9	0.6	-0.89	0.80	0.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8390	951	3	40	2	0	0	logfile
✘	8B9i	15932	2024-10-13	2022-10-06	2.95	3.92	2.99	3.5	0.011	1.24	0.0	0.05	19.48	0.01	1.963	11.55	2.31	3.6	96.3	0.1	0.95	0.84	0.75	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8026	984	4	11	3	5	0	logfile
✘	8EMR	28262	2024-10-10	2022-09-28	2.92	3.25	2.98	3.2	0.003	0.62	0.0	0.05	14.91	0.00	2.263	5.06	0.12	4.4	95.6	0.0	-0.58	0.74	0.79	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7685	952	4	0	6	0	0	logfile
✘	8EN7	28269	2024-10-13	2022-09-28	1.68	1.48	1.71	1.6	0.012	1.29	0.0	0.07	15.67	0.01	0.731	8.76	1.27	1.2	98.8	0.0	2.40	0.61	0.75	8.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37614	4128	54	0	6	2544	0	logfile
✘	8EM2	28232	2024-10-10	2022-09-26	3.02	3.25	3.03	3.2	0.004	0.82	0.0	0.05	17.86	0.01	2.233	6.51	0.48	4.2	95.8	0.0	-1.92	0.64	0.66	1.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8022	1002	4	0	2	0	0	logfile
✘	8GYP	34375	2024-10-15	2022-09-23	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	0.70	—	—	1.79	3.8	0.003	0.73	0.0	0.04	17.32	0.00	2.538	5.90	4.92	5.6	94.1	0.3	1.66	—	0.67	0.76	1.55	19538	2450	14	0	7	0	0	logfile
✘	8EKM	28207	2024-10-15	2022-09-21	3.56	3.84	3.63	3.8	0.002	0.59	0.0	0.04	17.68	0.00	2.199	8.94	0.37	9.6	90.4	0.0	-2.09	0.68	0.84	1.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19772	2590	14	0	14	0	0	logfile
✘	8EJG	28181	2024-10-11	2022-09-16	3.13	3.83	3.14	3.5	0.025	1.94	3.0	0.17	20.95	0.01	2.106	0.88	0.00	6.4	93.6	0.0	-1.09	0.86	0.81	3.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9966	1083	36	0	102	0	0	logfile
✘	8B3P	15832	2024-10-14	2022-09-16	2.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.91	—	—	1.32	—	—	—	—	—	—	—	—	—	—	—	—	—	5.88	—	—	—	0.02	17620	2370	55	0	0	0	0	logfile
✘	8EJJ	28184	2024-10-13	2022-09-16	3.22	3.73	3.20	3.6	0.024	1.80	0.0	0.15	13.95	0.01	2.394	1.97	0.00	2.8	97.2	0.0	0.28	0.83	0.84	3.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14862	1743	46	0	87	0	0	logfile
✘	8GVE	34291	2024-10-10	2022-09-15	3.17	3.38	3.19	3.4	0.003	0.62	0.0	0.04	14.33	0.01	2.113	5.93	0.00	5.7	94.3	0.0	0.31	0.64	0.80	1.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8054	1020	2	0	0	0	0	logfile
✘	8EFP	28087	2024-10-09	2022-09-08	3.8	4.73	3.90	4.0	0.006	1.46	7.0	0.09	18.61	0.01	1.908	33.65	3.07	13.3	86.7	0.0	-4.26	0.82	0.62	-0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4705	594	2	0	0	0	0	logfile
✘	8AZT	15771	2024-10-09	2022-09-06	3.7	3.48	2.93	4.2	0.011	1.98	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile

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