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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8PEo | 17633 | 2023-11-15 | 2023-06-14 | 2.69 | 3.21 | 2.84 | 2.7 | 0.005 | 0.77 | 0.0 | 0.05 | 29.93 | 0.01 | 2.201 | 8.09 | 0.14 | 1.9 | 98.1 | 0.0 | 0.99 | 0.92 | 0.88 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12835 | 853 | 12 | 294 | 0 | 0 | 0 | logfile |
✘ | 8JPF | 36478 | 2023-11-13 | 2023-06-11 | 3.02 | 3.21 | 3.41 | 3.3 | 0.006 | 1.76 | 0.0 | 0.27 | 15.61 | 0.00 | 2.214 | 5.45 | 0.46 | 2.7 | 97.3 | 0.0 | 2.25 | 0.48 | 0.75 | 2.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2269 | 304 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8P5W | 17455 | 2023-11-13 | 2023-05-24 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52656 | 6714 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 8SSA | 40749 | 2023-11-20 | 2023-05-08 | 3.88 | 4.18 | 3.96 | 4.1 | 0.010 | 1.32 | 0.0 | 0.06 | 14.40 | 0.01 | 2.213 | 6.33 | 1.00 | 11.4 | 87.6 | 1.0 | -5.19 | 0.70 | 0.77 | 2.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30888 | 3840 | 10 | 0 | 13 | 0 | 0 | logfile |
✘ | 8SS7 | 40746 | 2023-11-17 | 2023-05-08 | 2.76 | 2.92 | 2.87 | 3.0 | 0.022 | 1.64 | 0.0 | 0.36 | 17.40 | 0.01 | 2.252 | 6.95 | 1.45 | 5.7 | 93.8 | 0.5 | -5.34 | 0.68 | 0.77 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19437 | 2266 | 12 | 0 | 46 | 0 | 0 | logfile |
✘ | 8JB0 | 36139 | 2023-11-20 | 2023-05-07 | 4.2 | 4.12 | 4.27 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.01 | 0.00 | 2.196 | 13.62 | 0.09 | 2.8 | 97.0 | 0.2 | 2.31 | 0.76 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31387 | 3858 | 48 | 0 | 36 | 0 | 0 | logfile |
✘ | 8oTT | 17184 | 2023-11-15 | 2023-04-21 | 3.3 | 3.86 | 3.31 | 3.4 | 0.005 | 0.77 | 0.0 | 0.05 | 24.44 | 0.01 | 2.513 | 1.15 | 0.16 | 1.3 | 98.7 | 0.0 | 1.04 | 0.89 | 0.82 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12973 | 859 | 17 | 288 | 8 | 0 | 0 | logfile |
✘ | 8SL0 | 40570 | 2023-11-13 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8oR2 | 17115 | 2023-11-16 | 2023-04-12 | 3.2 | 2.36 | 3.12 | 3.0 | 0.007 | 0.76 | 13.0 | 0.06 | 14.65 | 0.00 | 1.805 | 7.23 | 1.24 | 3.3 | 96.7 | 0.0 | 1.99 | 0.72 | 0.66 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16558 | 2072 | 5 | 0 | 3 | 0 | 0 | logfile |
✘ | 8ooY | 17033 | 2023-11-13 | 2023-04-06 | 4.0 | 3.79 | 3.92 | 3.7 | 0.004 | 0.68 | 0.0 | 0.04 | 19.97 | 0.00 | 2.016 | 12.57 | 0.79 | 5.1 | 94.9 | 0.0 | -0.97 | 0.81 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5828 | 604 | 5 | 51 | 1 | 0 | 0 | logfile |
✘ | 8iXD | 35791 | 2023-11-20 | 2023-03-31 | 4.4 | 2.94 | 4.29 | 4.2 | 0.008 | 0.88 | 0.0 | 0.04 | 12.66 | 0.00 | 2.131 | 3.33 | 2.46 | 2.2 | 97.8 | 0.0 | -3.93 | 0.53 | 0.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 84096 | 10602 | 45 | 0 | 27 | 0 | 0 | logfile |
✘ | 8GMR | 40231 | 2023-11-15 | 2023-03-27 | 3.76 | 4.01 | 3.82 | 4.0 | 0.006 | 1.18 | 0.0 | 0.04 | 16.94 | 0.01 | 1.574 | 20.59 | 0.00 | 12.6 | 87.0 | 0.5 | -5.54 | 0.62 | 0.81 | 3.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12472 | 1712 | 16 | 0 | 8 | 0 | 0 | logfile |
✘ | 8iV5 | 35741 | 2023-11-13 | 2023-03-26 | 3.77 | 3.99 | 3.73 | 4.0 | 0.007 | 0.88 | 0.0 | 0.06 | 13.90 | 0.01 | 2.297 | 5.11 | 0.91 | 7.9 | 92.1 | 0.0 | -3.73 | 0.48 | 0.70 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5096 | 645 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 8iUM | 35726 | 2023-11-14 | 2023-03-24 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9955 | 1270 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8oiT | 16899 | 2023-11-15 | 2023-03-23 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113095 | 9412 | 79 | 1704 | 265 | 0 | 0 | logfile |
✘ | 8oiP | 16895 | 2023-11-18 | 2023-03-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72369 | 6162 | 47 | 1041 | 144 | 3 | 0 | logfile |
✘ | 8oiS | 16898 | 2023-11-18 | 2023-03-23 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72671 | 6150 | 48 | 1034 | 173 | 3 | 0 | logfile |
✘ | 8GKG | 40183 | 2023-11-17 | 2023-03-18 | 4.38 | 3.94 | 4.39 | 4.9 | 0.002 | 0.54 | 0.0 | 0.04 | 12.43 | 0.00 | 2.293 | 5.72 | 0.00 | 16.3 | 83.5 | 0.2 | -2.00 | 0.45 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17160 | 2700 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8Gi9 | 40063 | 2023-11-14 | 2023-03-13 | 2.84 | 3.09 | 2.82 | 3.1 | 0.009 | 1.11 | 0.0 | 0.10 | 15.66 | 0.00 | 1.878 | 8.12 | 0.00 | 4.6 | 95.4 | 0.0 | 1.20 | 0.57 | 0.79 | 4.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6852 | 720 | 3 | 0 | 39 | 45 | 0 | logfile |
✘ | 8GHV | 40052 | 2023-11-17 | 2023-03-12 | 2.8 | 3.09 | 2.84 | 3.1 | 0.005 | 0.92 | 0.0 | 0.05 | 14.04 | 0.01 | 2.190 | 3.46 | 0.76 | 3.3 | 96.7 | 0.0 | 0.26 | 0.59 | 0.79 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15874 | 1125 | 6 | 0 | 1 | 0 | 7637 | logfile |