Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8GHR	40047	2024-11-17	2023-03-10	3.2	3.33	3.23	3.3	0.003	0.58	0.0	0.04	13.78	0.00	1.923	5.03	0.00	3.9	96.1	0.0	-0.17	0.81	0.87	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13864	1716	12	0	20	6	0	logfile
✘	8GFZ	29989	2024-11-14	2023-03-08	3.0	3.28	3.08	3.3	0.003	0.50	0.0	0.04	13.53	0.00	2.201	2.21	0.00	1.7	98.3	0.0	0.72	0.65	0.88	4.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6744	891	6	0	2	5	0	logfile
✘	8GF6	29979	2024-11-19	2023-03-07	3.1	3.87	3.20	3.5	0.010	1.10	1.0	0.07	13.99	0.01	2.014	11.15	0.32	4.9	95.1	0.0	-2.33	0.87	0.81	2.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18315	2422	7	0	0	0	0	logfile
✘	8GE9	29961	2024-11-14	2023-03-06	3.5	3.79	3.53	3.8	0.003	0.56	0.0	0.04	13.04	0.00	2.215	7.69	0.00	1.7	98.3	0.0	1.38	0.70	0.82	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6519	900	5	0	1	1	0	logfile
✘	8GEA	29962	2024-11-14	2023-03-06	3.5	3.84	3.59	3.8	0.003	0.48	0.0	0.04	12.73	0.00	2.269	6.68	0.00	2.1	97.9	0.0	1.14	0.69	0.81	2.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6551	902	5	0	1	0	0	logfile
✘	8GEB	29964	2024-11-14	2023-03-06	3.6	3.88	3.62	3.8	0.003	0.52	0.0	0.04	12.50	0.00	2.333	6.54	0.00	2.4	97.6	0.0	1.44	0.71	0.81	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6223	893	5	0	1	0	0	logfile
✘	8CQC	16795	2024-11-15	2023-03-05	2.82	2.92	2.78	3.0	0.006	0.72	0.0	0.04	10.91	0.00	2.406	6.26	0.34	2.0	98.0	0.0	0.69	0.60	0.80	2.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8735	1085	15	0	5	30	0	logfile
✘	8iHM	35449	2024-11-17	2023-02-23	3.58	4.09	3.79	3.9	0.007	0.75	0.0	0.04	29.27	0.00	2.297	10.88	0.00	3.9	96.1	0.0	-3.94	0.84	0.83	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13153	885	12	317	0	0	0	logfile
✘	8GAV	29909	2024-11-19	2023-02-23	2.7	2.16	2.58	1.7	0.011	1.05	0.0	0.07	9.78	0.01	2.021	2.60	0.38	5.7	94.1	0.2	-3.07	0.81	0.82	5.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19088	2464	16	0	12	0	0	logfile
✘	8G7V	29825	2024-11-17	2023-02-17	3.9	4.01	3.87	3.9	0.007	0.85	0.0	0.05	16.75	0.01	2.246	5.87	0.42	6.0	94.0	0.0	-4.07	0.77	0.81	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14007	1621	8	45	3	0	0	logfile
✘	8iEN	35387	2024-11-15	2023-02-15	3.25	3.66	3.30	7.2	0.004	1.21	0.0	0.04	14.04	0.00	2.168	8.43	0.24	5.0	94.9	0.1	-2.18	0.18	0.00	-0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7678	991	2	0	4	0	0	logfile
✘	8G5o	29751	2024-11-16	2023-02-13	2.61	3.53	2.82	3.3	0.005	0.84	0.0	0.04	16.53	0.01	2.003	5.69	1.72	5.6	94.4	0.0	0.26	0.66	0.53	1.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11952	1716	5	38	0	0	0	logfile
✘	8G4o	29728	2024-11-18	2023-02-10	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17353	2094	20	0	39	0	0	logfile
✘	8iB2	35329	2024-11-18	2023-02-09	3.8	3.87	3.55	3.8	0.003	0.69	0.0	0.05	13.90	0.01	2.232	3.61	0.00	2.2	97.8	0.0	-0.01	0.59	0.86	1.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15229	1931	11	0	5	0	0	logfile
✘	8G3o	29706	2024-11-19	2023-02-08	3.1	3.51	3.05	3.3	0.015	1.71	7.0	0.09	13.44	0.01	2.218	0.31	0.00	3.8	95.6	0.6	-0.63	0.84	0.91	4.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18487	2272	38	0	81	0	0	logfile
✘	8G15	29662	2024-11-15	2023-02-01	2.07	2.66	1.97	2.4	0.005	0.96	0.0	0.05	16.07	0.01	2.243	5.30	1.59	5.0	95.0	0.0	-1.62	0.88	0.90	5.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10056	1336	4	0	0	0	0	logfile
✘	8CE7	16600	2024-11-16	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.57	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✘	8FZ6	29604	2024-11-18	2023-01-27	2.54	2.71	2.58	2.7	0.002	0.43	0.0	0.04	15.52	0.00	2.199	5.23	1.26	1.4	98.6	0.0	1.88	0.80	0.90	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49780	6404	30	0	0	0	0	logfile
✘	8FY3	29551	2024-11-15	2023-01-25	2.88	3.13	2.93	3.2	0.003	0.49	0.0	0.04	11.51	0.00	2.186	7.75	2.96	4.1	95.9	0.0	1.07	0.57	0.73	3.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8948	1123	3	0	0	0	0	logfile
✘	8i4A	35167	2024-11-16	2023-01-19	3.4	3.59	3.42	3.6	0.012	0.94	0.0	0.05	15.10	0.01	2.115	13.72	0.00	5.1	94.9	0.0	-1.46	0.61	0.79	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9763	1218	2	0	1	0	0	logfile

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