Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8G3o	29706	2024-11-19	2023-02-08	3.1	3.51	3.05	3.3	0.015	1.71	7.0	0.09	13.44	0.01	2.218	0.31	0.00	3.8	95.6	0.6	-0.63	0.84	0.91	4.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18487	2272	38	0	81	0	0	logfile
✘	8CE7	16600	2024-11-16	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.57	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✘	8G15	29662	2024-11-15	2023-02-01	2.07	2.66	1.97	2.4	0.005	0.96	0.0	0.05	16.07	0.01	2.243	5.30	1.59	5.0	95.0	0.0	-1.62	0.88	0.90	5.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10056	1336	4	0	0	0	0	logfile
✘	8FZ6	29604	2024-11-18	2023-01-27	2.54	2.71	2.58	2.7	0.002	0.43	0.0	0.04	15.52	0.00	2.199	5.23	1.26	1.4	98.6	0.0	1.88	0.80	0.90	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49780	6404	30	0	0	0	0	logfile
✘	8FY3	29551	2024-11-15	2023-01-25	2.88	3.13	2.93	3.2	0.003	0.49	0.0	0.04	11.51	0.00	2.186	7.75	2.96	4.1	95.9	0.0	1.07	0.57	0.73	3.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8948	1123	3	0	0	0	0	logfile
✘	8i4A	35167	2024-11-16	2023-01-19	3.4	3.59	3.42	3.6	0.012	0.94	0.0	0.05	15.10	0.01	2.115	13.72	0.00	5.1	94.9	0.0	-1.46	0.61	0.79	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9763	1218	2	0	1	0	0	logfile
✘	8BQV	16188	2024-11-15	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	8BQW	16189	2024-11-18	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✘	8i49	35165	2024-11-19	2023-01-18	2.41	2.54	2.47	2.5	0.015	1.46	29.0	0.09	16.84	0.01	2.263	7.48	0.43	6.1	93.8	0.2	-1.51	0.75	0.85	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	50754	3180	12	0	6	0	25248	logfile
✘	8i42	35162	2024-11-17	2023-01-18	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14060	1560	10	0	40	0	0	logfile
✘	8FSB	29418	2024-11-18	2023-01-09	2.75	3.19	2.70	3.0	0.004	0.71	0.0	0.05	14.09	0.00	2.031	4.07	0.00	5.3	94.7	0.0	-0.81	0.81	0.82	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16640	1975	10	0	20	0	0	logfile
✘	8FR6	29396	2024-11-20	2023-01-06	2.5	3.15	2.54	2.9	0.005	0.79	0.0	0.05	22.07	0.00	2.125	3.16	0.98	2.5	97.5	0.0	0.44	0.80	0.79	3.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21237	2448	60	0	159	0	0	logfile
✘	8FoK	29352	2024-11-19	2022-12-30	3.56	3.95	3.62	3.5	0.008	0.92	1.0	0.04	16.60	0.01	2.141	9.65	0.15	2.3	97.7	0.0	0.89	0.84	0.68	1.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18827	2261	7	35	1	0	0	logfile
✘	8HUD	35035	2024-11-15	2022-12-23	3.43	3.64	3.43	3.6	0.005	0.84	0.0	0.06	20.89	0.00	2.284	10.27	0.56	9.8	90.2	0.0	-1.38	0.71	0.70	1.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8670	767	4	108	0	0	0	logfile
✘	8HTT	35017	2024-11-14	2022-12-21	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3292	389	5	0	8	0	0	logfile
✘	8C21	16387	2024-11-16	2022-12-21	3.6	4.19	3.27	3.8	0.003	0.58	0.0	0.04	14.61	0.00	2.223	10.61	0.07	5.2	94.4	0.4	0.00	0.65	0.67	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11954	1441	6	0	2	0	0	logfile
✘	8FJ5	29215	2024-11-19	2022-12-19	2.9	3.03	2.92	3.0	0.004	0.62	0.0	0.04	11.79	0.00	2.391	3.19	0.00	3.4	96.6	0.0	1.51	0.55	0.86	3.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18980	2660	20	0	0	0	0	logfile
✘	8FGX	29077	2024-11-16	2022-12-13	2.62	3.60	2.58	3.0	0.003	0.45	0.0	0.04	9.99	0.00	2.400	1.82	0.00	1.6	98.4	0.0	1.41	0.90	0.88	4.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9899	645	4	0	3	0	4873	logfile
✘	8HQ7	34946	2024-11-16	2022-12-13	2.7	2.88	2.96	2.8	0.003	0.72	0.0	0.05	12.54	0.01	2.131	5.95	0.00	4.8	95.2	0.0	0.23	0.77	0.85	4.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8292	1082	6	0	2	0	0	logfile
✘	8BYS	16332	2024-11-14	2022-12-13	3.28	3.60	3.29	3.7	0.004	0.56	0.0	0.04	13.51	0.00	2.195	6.52	0.00	6.0	94.0	0.0	-0.91	0.70	0.83	3.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7406	968	3	0	0	0	0	logfile

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