Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8HPA	34929	2024-11-17	2022-12-12	3.01	3.41	3.24	3.4	0.002	0.55	0.0	0.04	15.99	0.00	2.144	9.19	0.00	9.3	90.0	0.7	-0.92	0.67	0.71	2.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14122	1648	5	33	0	0	0	logfile
✘	8BXF	16317	2024-11-17	2022-12-08	3.4	3.97	3.47	3.9	0.004	0.95	0.0	0.06	13.47	0.01	1.507	5.27	0.38	4.3	95.7	0.0	-2.13	0.67	0.81	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12692	1630	10	0	5	0	0	logfile
✘	8HN8	34908	2024-11-15	2022-12-07	3.0	3.50	3.16	3.5	0.003	0.59	0.0	0.04	13.37	0.00	2.225	4.83	0.41	3.1	96.9	0.0	0.55	0.57	0.78	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8860	1120	6	0	1	0	0	logfile
✘	8HMZ	34905	2024-11-16	2022-12-06	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11542	1367	9	82	6	0	0	logfile
✘	8BVS	16270	2024-11-14	2022-12-05	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4799	617	4	1	1	0	0	logfile
✘	8HMA	34891	2024-11-19	2022-12-02	3.4	3.79	3.59	3.7	0.005	0.58	0.0	0.04	14.85	0.00	2.196	7.66	0.00	5.6	94.4	0.0	-0.67	0.62	0.78	2.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19101	2333	5	0	19	0	0	logfile
✘	8FCX	28998	2024-11-17	2022-12-01	3.04	4.27	3.25	3.6	0.003	0.60	0.0	0.04	17.79	0.00	1.984	13.10	0.61	3.9	95.4	0.7	0.34	0.85	0.79	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13940	1715	10	0	10	0	0	logfile
✘	8HLB	34871	2024-11-14	2022-11-29	3.63	3.93	3.68	4.0	0.003	0.65	1.0	0.04	13.64	0.01	2.204	10.49	0.00	8.4	91.2	0.4	-2.13	0.70	0.75	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7461	977	5	0	0	0	0	logfile
✘	8HiJ	34818	2024-11-15	2022-11-20	3.54	2.56	3.51	3.0	0.005	0.76	1.0	0.05	9.66	0.01	2.315	3.83	0.00	5.2	94.8	0.0	-3.81	0.69	0.69	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8245	1055	5	0	1	0	0	logfile
✘	8F6H	28883	2024-11-20	2022-11-16	3.9	4.17	3.97	4.1	0.002	0.47	0.0	0.04	13.60	0.00	1.887	6.02	0.00	5.9	94.0	0.2	-0.05	0.72	0.79	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20768	1358	8	0	6	0	10347	logfile
✘	8HFL	34722	2024-11-14	2022-11-11	3.0	3.38	3.09	3.3	0.003	0.55	1.0	0.04	15.47	0.00	1.981	5.43	1.72	2.7	97.1	0.2	1.46	0.60	0.82	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4441	553	2	0	2	3	0	logfile
✘	8HFi	34721	2024-11-14	2022-11-10	2.5	2.71	2.52	2.7	0.003	0.63	0.0	0.04	15.56	0.00	2.008	3.64	1.08	2.2	97.8	0.0	1.51	0.75	0.88	3.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4443	548	2	0	2	39	0	logfile
✘	8BLY	16115	2024-11-20	2022-11-10	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1.29	—	—	2.22	3.1	0.003	0.49	0.0	0.04	16.30	0.00	1.922	8.18	1.86	1.4	98.6	0.0	1.44	—	0.84	0.87	2.10	54334	7336	28	0	28	0	0	logfile
✘	8HF6	34714	2024-11-15	2022-11-09	3.1	3.47	3.46	3.4	0.009	1.05	3.0	0.07	15.34	0.00	2.207	8.43	3.23	4.6	95.1	0.3	1.20	0.72	0.87	2.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8916	1126	4	0	2	0	0	logfile
✘	8HEE	34689	2024-11-20	2022-11-08	3.2	3.38	3.21	3.4	0.006	0.88	0.0	0.05	15.88	0.01	1.796	14.37	0.64	7.5	92.5	0.0	-1.31	0.73	0.78	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21905	2775	15	0	0	0	0	logfile
✘	8HDW	34681	2024-11-20	2022-11-06	3.0	2.72	2.96	2.9	0.006	0.83	0.0	0.05	15.95	0.01	1.939	13.55	11.19	11.8	88.2	0.0	-2.56	0.46	0.72	1.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54552	7140	30	0	0	0	0	logfile
✘	8F0A	28754	2024-11-19	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18060	1212	9	0	0	0	9189	logfile
✘	8EZQ	28748	2024-11-20	2022-11-01	3.7	2.65	—	1.8	0.003	0.61	0.0	0.04	11.91	0.00	2.048	17.77	0.42	9.6	90.4	0.0	0.31	0.74	0.75	1.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20456	2545	2	0	0	0	0	logfile
✘	8BHW	16071	2024-11-20	2022-11-01	3.2	4.17	3.28	3.6	0.003	0.56	0.0	0.03	16.12	0.00	2.188	6.49	0.18	3.2	96.8	0.0	3.05	0.76	0.83	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21240	2656	8	0	0	0	0	logfile
✘	8HC5	34652	2024-11-17	2022-11-01	3.43	3.51	3.37	3.6	0.002	0.53	0.0	0.04	15.56	0.00	2.249	5.34	0.00	4.0	96.0	0.0	-0.79	0.60	0.59	1.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11400	1493	6	0	1	0	0	logfile

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