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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8iA7 | 35297 | 2023-12-08 | 2023-02-08 | 3.1 | 3.36 | 3.21 | 3.4 | 0.011 | 0.73 | 0.0 | 0.05 | 12.55 | 0.00 | 2.202 | 7.95 | 0.00 | 5.0 | 94.8 | 0.2 | -2.23 | 0.58 | 0.78 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8586 | 1123 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8i9S | 35282 | 2023-12-08 | 2023-02-07 | 3.26 | 3.55 | 3.33 | 3.6 | 0.002 | 0.56 | 0.0 | 0.04 | 12.77 | 0.00 | 2.260 | 5.60 | 0.00 | 4.5 | 95.5 | 0.0 | 0.32 | 0.68 | 0.75 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8123 | 1113 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CE7 | 16600 | 2023-12-09 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8G00 | 29640 | 2023-12-14 | 2023-01-31 | 3.4 | 3.72 | 3.50 | 3.7 | 0.004 | 0.67 | 0.0 | 0.05 | 17.58 | 0.00 | 2.029 | 12.24 | 1.41 | 4.2 | 95.7 | 0.1 | 0.02 | 0.75 | 0.80 | 1.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26819 | 3172 | 9 | 97 | 1 | 0 | 0 | logfile |
✘ | 8G0E | 29655 | 2023-12-16 | 2023-01-31 | 2.6 | 3.64 | 2.70 | 3.1 | 0.008 | 0.94 | 6.0 | 0.05 | 14.17 | 0.01 | 1.784 | 7.22 | 1.18 | 2.4 | 97.5 | 0.1 | 0.70 | 0.80 | 0.76 | 4.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35959 | 4858 | 32 | 0 | 16 | 0 | 0 | logfile |
✘ | 8FYB | 29563 | 2023-12-10 | 2023-01-25 | 3.1 | 3.33 | 3.15 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 20.88 | 0.00 | 2.211 | 12.15 | 0.09 | 3.6 | 96.4 | 0.0 | 0.63 | 0.71 | 0.78 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13486 | 1359 | 10 | 136 | 0 | 0 | 0 | logfile |
✘ | 8BQW | 16189 | 2023-12-11 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✘ | 8C82 | 16469 | 2023-12-12 | 2023-01-18 | 3.4 | 3.85 | 3.56 | 3.8 | 0.008 | 0.67 | 0.0 | 0.05 | 15.03 | 0.00 | 2.108 | 4.64 | 0.09 | 3.0 | 97.0 | 0.0 | 0.90 | 0.70 | 0.81 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21070 | 2618 | 12 | 0 | 6 | 0 | 0 | logfile |
✘ | 8BQV | 16188 | 2023-12-08 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 8FoA | 29343 | 2023-12-12 | 2022-12-30 | 2.66 | 2.96 | 2.81 | 2.9 | 0.023 | 1.52 | 0.0 | 0.53 | 22.53 | 0.01 | 2.298 | 7.30 | 0.42 | 5.2 | 94.7 | 0.0 | -5.28 | 0.66 | 0.84 | 4.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21287 | 2448 | 8 | 0 | 53 | 0 | 0 | logfile |
✘ | 8FoB | 29344 | 2023-12-12 | 2022-12-30 | 2.71 | 2.96 | 2.77 | 3.0 | 0.024 | 1.57 | 0.0 | 0.54 | 21.84 | 0.01 | 2.073 | 8.34 | 0.39 | 8.3 | 91.7 | 0.0 | -5.44 | 0.60 | 0.72 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20390 | 2376 | 12 | 0 | 46 | 52 | 0 | logfile |
✘ | 8FNK | 29316 | 2023-12-15 | 2022-12-27 | 3.7 | 4.05 | 3.77 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 17.78 | 0.00 | 2.198 | 10.18 | 0.32 | 3.9 | 96.1 | 0.0 | 0.42 | 0.77 | 0.75 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30831 | 3656 | 11 | 94 | 0 | 0 | 0 | logfile |
✘ | 8C06 | 16355 | 2023-12-13 | 2022-12-16 | 2.7 | 2.32 | 2.57 | 2.7 | 0.003 | 0.76 | 0.0 | 0.05 | 13.59 | 0.01 | 2.333 | 2.28 | 0.00 | 5.5 | 94.5 | 0.0 | -1.51 | 0.67 | 0.75 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25324 | 3298 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 8HQC | 34947 | 2023-12-08 | 2022-12-13 | 3.89 | 4.15 | 3.91 | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 11.77 | 0.01 | 2.223 | 6.60 | 0.12 | 4.1 | 95.9 | 0.0 | 0.00 | 0.73 | 0.80 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8538 | 1186 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HPT | 34943 | 2023-12-08 | 2022-12-13 | 3.39 | 3.64 | 3.38 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 14.89 | 0.01 | 2.212 | 6.51 | 0.40 | 3.4 | 96.6 | 0.0 | 0.29 | 0.72 | 0.81 | 2.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7897 | 1094 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8FGX | 29077 | 2023-12-09 | 2022-12-13 | 2.62 | 3.60 | 2.58 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 9.99 | 0.00 | 2.400 | 1.82 | 0.00 | 1.6 | 98.4 | 0.0 | 1.41 | 0.90 | 0.88 | 4.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9899 | 645 | 4 | 0 | 3 | 0 | 4873 | logfile |
✘ | 8HNB | 34909 | 2023-12-07 | 2022-12-07 | 3.53 | 4.14 | 3.49 | 4.0 | 0.007 | 1.35 | 2.0 | 0.08 | 14.65 | 0.02 | 2.382 | 14.25 | 2.09 | 2.3 | 97.7 | 0.0 | -0.66 | 0.58 | 0.74 | 1.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4083 | 562 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 8FE1 | 29019 | 2023-12-10 | 2022-12-05 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15445 | 1772 | 10 | 0 | 48 | 0 | 0 | logfile |
✘ | 8FCN | 28987 | 2023-12-16 | 2022-12-01 | 2.95 | 3.93 | 4.11 | 3.5 | 0.010 | 0.82 | 0.0 | 0.06 | 12.73 | 0.00 | 2.403 | 0.65 | 0.11 | 1.2 | 98.7 | 0.1 | 0.17 | 0.76 | 0.64 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35034 | 4446 | 18 | 0 | 12 | 0 | 0 | logfile |
✘ | 8FCR | 28991 | 2023-12-16 | 2022-12-01 | 4.12 | 4.48 | 4.26 | 4.3 | 0.011 | 0.85 | 0.0 | 0.06 | 12.23 | 0.00 | 2.340 | 1.40 | 0.00 | 1.7 | 98.2 | 0.1 | 0.38 | 0.70 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36931 | 4679 | 13 | 0 | 12 | 0 | 0 | logfile |