Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TJK	25928	2024-02-19	2022-01-16	2.7	3.10	2.76	2.9	0.005	0.89	0.0	0.05	17.38	0.01	1.886	3.81	0.39	2.9	97.1	0.0	-1.60	0.82	0.87	3.60	3.0	0.005	0.61	0.0	0.04	19.01	0.00	1.833	7.31	2.15	2.8	97.2	0.0	0.96	1.39	0.82	0.90	3.38	24668	2785	21	82	8	130	0	logfile
✔	7TJF	25924	2024-02-18	2022-01-16	2.6	3.06	2.57	2.8	0.005	0.87	0.0	0.05	19.81	0.01	1.795	4.00	1.87	2.1	97.9	0.0	-1.60	0.85	0.89	3.79	2.8	0.003	0.57	0.0	0.04	19.57	0.00	1.896	6.48	1.87	2.2	97.8	0.0	1.17	1.37	0.86	0.92	3.59	21125	2327	19	82	6	297	0	logfile
✔	7TJH	25925	2024-02-19	2022-01-16	2.5	3.01	2.54	2.7	0.005	0.91	0.0	0.05	19.97	0.01	2.076	3.51	2.06	3.0	97.0	0.0	-1.38	0.83	0.89	3.79	2.8	0.003	0.58	0.0	0.04	19.42	0.00	1.910	6.58	1.66	2.8	97.2	0.0	1.26	0.65	0.84	0.91	3.47	23899	2689	22	82	8	148	0	logfile
✔	7TJi	25926	2024-02-19	2022-01-16	2.7	3.10	2.66	2.9	0.005	0.90	0.0	0.05	20.30	0.01	1.974	4.53	2.52	3.0	97.0	0.0	-1.44	0.83	0.88	3.53	2.9	0.004	0.58	0.0	0.04	20.02	0.00	1.877	7.37	2.93	2.7	97.3	0.0	1.23	1.06	0.85	0.91	3.35	23766	2676	20	82	8	112	0	logfile
✔	7TJJ	25927	2024-02-19	2022-01-16	2.7	3.01	2.74	2.9	0.006	0.94	0.0	0.06	17.52	0.01	2.003	3.99	0.47	2.9	97.1	0.0	-1.54	0.82	0.88	4.00	2.9	0.008	0.69	0.0	0.05	19.14	0.00	1.739	8.08	1.95	3.2	96.8	0.0	0.77	1.09	0.83	0.91	3.72	24732	2791	22	82	8	160	0	logfile
✔	7TJQ	25929	2024-02-21	2022-01-16	3.13	2.03	—	2.0	0.004	0.77	0.0	0.05	13.28	0.01	2.288	1.08	1.03	4.5	95.5	0.0	-0.55	0.75	0.75	3.94	2.0	0.005	0.65	0.0	0.05	15.54	0.00	2.118	8.77	2.90	2.8	97.2	0.0	-0.19	0.94	0.75	0.78	3.04	20538	2679	21	0	12	0	0	logfile
✔	7QTQ	14145	2024-02-13	2022-01-15	3.3	3.53	—	3.4	0.008	0.84	4.0	0.06	15.29	0.01	2.045	9.61	0.20	10.6	89.4	0.0	-2.27	0.72	0.82	2.74	3.5	0.003	0.56	2.0	0.04	15.69	0.01	1.939	8.81	0.70	7.4	92.6	0.0	-1.02	0.39	0.71	0.84	2.30	54954	3577	8	0	24	0	26821	logfile
✔	7WMM	32615	2024-02-13	2022-01-15	2.6	2.33	—	2.7	0.008	0.86	0.0	0.05	12.79	0.00	2.361	5.62	0.00	6.8	93.2	0.0	-2.83	0.51	0.88	6.56	2.7	0.004	0.79	0.0	0.05	16.37	0.00	2.249	4.69	0.38	7.1	92.9	0.0	-2.25	0.46	0.52	0.89	5.74	2618	366	8	0	2	0	0	logfile
✔	7WMP	32616	2024-02-22	2022-01-15	3.6	3.34	—	3.3	0.005	0.79	0.0	0.05	16.33	0.00	2.038	7.53	1.32	7.4	92.6	0.0	-2.54	0.71	0.85	1.36	3.3	0.004	0.73	6.0	0.04	17.83	0.00	2.107	11.09	3.10	6.8	93.2	0.0	0.76	0.49	0.72	0.85	1.21	98184	12204	36	0	0	0	0	logfile
✔	7QTT	14146	2024-02-18	2022-01-15	3.1	4.66	2.92	2.3	0.004	0.85	1.0	0.10	16.59	0.01	2.124	3.97	0.04	4.5	95.2	0.2	-2.31	0.77	0.82	2.33	2.4	0.003	0.52	0.0	0.04	16.61	0.00	1.893	8.96	0.32	4.0	95.8	0.2	1.26	0.26	0.78	0.84	2.15	73537	9759	46	343	21	0	0	logfile
✔	7QTK	14143	2024-02-13	2022-01-14	3.84	4.13	—	4.0	0.004	0.73	1.0	0.05	13.16	0.00	2.182	9.44	0.54	4.9	95.0	0.2	-0.03	0.61	0.79	1.74	4.0	0.003	0.66	0.0	0.05	14.43	0.00	2.180	9.85	1.80	5.0	94.8	0.2	-0.11	0.53	0.62	0.79	1.78	5009	643	4	0	2	0	0	logfile
✔	7QTJ	14142	2024-02-14	2022-01-14	4.01	4.23	—	4.1	0.004	0.73	4.0	0.05	15.20	0.01	2.144	8.44	1.27	5.2	94.5	0.3	0.17	0.63	0.74	—	4.1	0.006	0.82	0.0	0.05	13.31	0.00	2.149	16.88	0.09	8.0	91.7	0.2	-1.35	0.51	0.64	0.75	—	9942	1280	8	0	5	0	0	logfile
✔	7TJ8	25919	2024-02-14	2022-01-14	3.2	3.59	—	3.5	0.015	1.03	2.0	0.06	17.59	0.01	2.042	6.51	0.80	6.0	93.4	0.7	-2.85	0.58	0.84	3.59	3.5	0.003	0.65	0.0	0.04	16.79	0.00	2.216	4.09	1.78	4.6	95.3	0.1	0.78	1.33	0.58	0.85	2.31	10551	1242	4	0	18	0	0	logfile
✔	7WM1	32597	2024-02-16	2022-01-14	2.8	2.99	—	3.1	0.012	1.25	34.0	0.08	20.14	0.01	2.080	15.92	15.89	6.6	93.4	0.0	-4.36	0.65	0.80	2.43	3.1	0.003	0.61	0.0	0.04	18.54	0.00	2.204	7.75	3.55	4.0	95.9	0.1	-0.27	3.93	0.59	0.80	2.45	15197	1844	8	0	7	0	0	logfile
✔	7TJ2	25915	2024-02-17	2022-01-14	3.2	3.32	—	3.4	0.002	0.37	0.0	0.04	11.30	0.00	2.196	3.77	1.64	2.4	97.6	0.0	0.18	0.69	0.76	3.52	3.3	0.004	0.54	0.0	0.04	15.12	0.00	2.192	6.55	3.34	3.3	96.7	0.0	-0.16	2.83	0.71	0.82	3.40	17083	2007	8	62	0	0	0	logfile
✔	7QTi	14141	2024-02-23	2022-01-14	3.04	3.98	—	3.7	0.004	0.71	1.0	0.05	15.36	0.01	2.151	8.80	0.91	5.5	94.2	0.3	-0.44	0.72	0.68	1.47	3.7	0.005	0.68	0.0	0.05	14.74	0.00	2.098	10.12	1.65	6.9	93.0	0.1	-0.60	0.50	0.75	0.76	1.56	40094	5061	31	0	64	0	0	logfile
✔	7WLY	32594	2024-02-20	2022-01-14	3.4	3.69	—	3.5	0.007	0.86	0.0	0.06	13.27	0.01	2.207	9.99	0.97	7.1	92.9	0.0	-2.55	0.80	0.79	1.99	3.5	0.003	0.63	0.0	0.04	14.11	0.00	2.112	10.04	2.14	4.4	95.6	0.0	-0.95	0.56	0.81	0.82	1.86	28550	3627	12	0	31	0	0	logfile
✔	7WM4	32599	2024-02-19	2022-01-14	3.2	4.44	—	3.2	0.003	0.63	0.0	0.04	19.01	0.00	2.140	9.96	0.08	4.9	95.1	0.1	-1.73	0.86	0.70	0.72	3.2	0.005	0.78	0.0	0.04	17.61	0.00	2.088	26.78	2.29	10.9	89.0	0.2	-2.55	1.36	0.87	0.77	0.55	25848	2658	38	162	82	0	0	logfile
✔	7WM2	32598	2024-02-16	2022-01-14	2.69	2.86	—	3.0	0.012	1.03	12.0	0.07	18.17	0.01	2.110	18.30	12.04	5.9	94.0	0.2	-4.24	0.49	0.72	2.14	3.0	0.003	0.67	0.0	0.04	17.78	0.00	2.188	9.25	4.71	2.7	97.3	0.0	0.03	1.26	0.60	0.83	2.48	15485	1878	8	0	7	0	0	logfile
✔	7WM0	32596	2024-02-13	2022-01-14	3.35	3.62	—	3.7	0.009	1.22	0.0	0.08	12.60	0.01	2.405	9.08	0.28	5.4	94.6	0.0	-2.87	0.69	0.56	0.97	3.6	0.004	0.84	0.0	0.05	16.37	0.00	2.037	16.19	6.89	5.9	94.1	0.0	-1.99	1.76	0.76	0.68	0.46	3376	432	4	0	1	0	0	logfile

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