Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JXW	36715	2025-04-29	2023-07-01	3.01	3.30	3.13	3.4	0.006	0.82	0.0	0.05	13.11	0.01	2.092	6.36	0.80	4.2	95.8	0.0	-0.59	0.61	0.77	3.22	3.4	0.002	0.56	0.0	0.04	14.79	0.00	2.487	3.73	2.75	3.7	96.3	0.0	0.86	0.33	0.57	0.75	2.25	8389	1108	6	0	1	0	0	logfile
✔	8JXX	36716	2025-04-29	2023-07-01	3.06	3.38	3.15	3.4	0.007	0.82	0.0	0.05	13.57	0.01	2.173	4.81	0.00	4.8	95.2	0.0	-0.22	0.63	0.79	2.61	3.5	0.002	0.56	0.0	0.04	14.91	0.00	2.553	3.61	1.79	3.5	96.5	0.0	1.22	0.34	0.60	0.78	1.85	8493	1103	6	0	1	0	0	logfile
✔	8JXV	36714	2025-04-28	2023-07-01	3.21	2.43	3.23	3.3	0.007	0.83	0.0	0.05	13.11	0.00	2.068	12.58	0.00	5.8	94.2	0.0	-0.75	0.70	0.69	1.54	3.3	0.003	0.67	0.0	0.04	14.79	0.00	2.476	8.00	1.33	4.4	95.6	0.0	0.53	0.35	0.70	0.70	1.07	7935	1040	6	0	1	0	0	logfile
✔	8JXT	36712	2025-04-29	2023-07-01	3.07	3.35	3.13	3.4	0.005	0.68	0.0	0.04	12.50	0.01	2.228	7.13	0.24	5.4	94.6	0.0	-0.33	0.55	0.69	2.25	3.4	0.003	0.57	0.0	0.04	14.75	0.00	2.518	4.72	1.89	2.9	97.1	0.0	0.47	1.20	0.57	0.73	1.78	8298	1107	6	0	2	0	0	logfile
✔	8JXJ	36703	2025-04-30	2023-06-30	3.9	3.45	3.79	3.5	0.004	0.82	0.0	0.05	17.72	0.01	2.143	9.75	1.79	8.1	91.9	0.0	-1.22	0.73	0.79	2.30	3.5	0.003	0.69	0.0	0.05	15.61	0.00	2.177	6.92	3.49	7.8	92.2	0.0	-1.38	0.37	0.76	0.81	2.10	9158	1140	8	0	26	0	0	logfile
✔	8TCF	41153	2025-04-28	2023-06-30	2.9	3.25	2.96	3.2	0.014	1.42	0.0	0.09	12.16	0.01	1.804	0.72	0.41	3.7	96.2	0.1	0.27	0.75	0.76	3.61	3.1	0.003	0.66	0.0	0.05	15.08	0.00	1.971	6.42	1.62	3.2	96.7	0.1	0.44	0.75	0.72	0.79	3.01	7050	878	9	0	22	0	0	logfile
✔	8JXF	36699	2025-04-30	2023-06-30	3.6	2.90	3.48	3.2	0.007	0.90	0.0	0.06	19.14	0.01	2.150	9.11	1.73	5.6	94.0	0.3	-0.39	0.69	0.77	2.44	3.2	0.003	0.69	0.0	0.05	15.70	0.00	2.159	5.43	3.46	5.1	94.9	0.0	-0.16	0.38	0.70	0.79	2.10	9618	1162	11	0	57	0	0	logfile
✔	8JXG	36700	2025-04-30	2023-06-30	3.2	3.02	3.46	3.3	0.007	0.85	0.0	0.05	19.60	0.02	2.194	7.92	2.17	7.0	92.8	0.2	-0.81	0.68	0.76	1.89	3.3	0.003	0.67	0.0	0.05	16.30	0.00	2.178	4.85	2.35	6.0	94.0	0.0	-0.48	0.37	0.70	0.81	1.41	9810	1187	11	0	58	0	0	logfile
✔	8TC3	41151	2025-04-27	2023-06-29	2.57	2.79	2.58	2.8	0.003	0.52	0.0	0.04	18.01	0.00	2.266	7.50	0.46	0.9	99.1	0.0	0.50	0.72	0.88	5.45	2.8	0.004	0.54	0.0	0.04	18.29	0.00	2.625	6.54	2.75	1.7	98.3	0.0	0.82	0.67	0.67	0.86	5.01	4129	542	5	0	1	17	0	logfile
✔	8JWH	36683	2025-04-27	2023-06-29	3.34	2.70	3.23	3.4	0.004	0.84	0.0	0.05	19.18	0.01	2.135	16.08	0.76	4.7	95.3	0.0	-0.43	0.74	0.77	1.81	3.4	0.003	0.70	0.0	0.04	19.25	0.00	2.505	12.08	3.04	4.9	95.1	0.0	0.55	0.93	0.73	0.76	1.44	4870	597	1	0	0	0	0	logfile
✔	8JWi	36684	2025-04-30	2023-06-29	2.94	3.38	3.21	3.4	0.005	0.81	0.0	0.04	9.61	0.00	2.035	1.42	0.00	6.7	93.3	0.0	-3.73	0.65	0.78	2.96	3.4	0.003	0.59	0.0	0.04	14.64	0.00	1.924	2.52	1.81	6.7	93.3	0.0	-0.43	0.60	0.66	0.82	1.93	9431	1164	2	0	4	0	0	logfile
✔	8JWF	36681	2025-04-30	2023-06-29	3.64	4.25	3.77	4.0	0.007	0.80	0.0	0.05	10.45	0.01	2.208	3.05	0.09	7.2	92.8	0.0	-3.42	0.69	0.74	1.48	4.0	0.003	0.66	0.0	0.04	14.10	0.00	2.505	7.31	2.30	6.1	93.9	0.0	0.47	2.34	0.71	0.76	0.71	9717	1204	2	0	1	0	0	logfile
✔	8JWG	36682	2025-04-30	2023-06-29	3.54	4.16	3.72	4.0	0.005	0.72	0.0	0.04	9.43	0.00	2.223	2.05	0.00	7.9	92.1	0.0	-3.71	0.68	0.71	1.76	4.0	0.003	0.66	0.0	0.04	14.55	0.00	2.483	7.49	1.96	5.9	94.1	0.0	-0.46	0.96	0.69	0.74	1.01	9620	1192	2	0	1	0	0	logfile
✔	8PMQ	17764	2025-04-28	2023-06-29	3.53	3.56	3.44	3.6	0.005	0.75	0.0	0.05	14.38	0.01	2.266	6.53	0.50	5.9	94.1	0.0	0.65	0.78	0.84	1.96	3.6	0.004	0.59	0.0	0.04	16.04	0.00	1.123	5.67	2.02	4.8	95.2	0.0	1.56	1.46	0.77	0.84	1.19	7746	1007	6	0	2	0	0	logfile
✔	8PMD	17759	2025-04-30	2023-06-28	2.95	2.88	2.91	2.9	0.004	0.66	0.0	0.04	18.21	0.00	1.353	11.85	0.21	1.8	98.2	0.0	1.07	0.62	0.80	2.46	2.9	0.004	0.66	0.0	0.04	18.47	0.00	1.980	8.87	2.47	1.8	98.2	0.0	1.35	0.46	0.61	0.80	2.48	8844	1129	2	0	4	2	0	logfile
✔	8PM4	17757	2025-04-27	2023-06-28	2.93	3.28	3.02	3.2	0.007	0.63	0.0	0.04	20.61	0.01	2.220	11.13	1.32	1.7	98.3	0.0	1.17	0.74	0.82	2.99	3.2	0.006	0.64	0.0	0.04	21.19	0.00	2.495	8.59	1.32	1.8	98.2	0.0	1.47	1.14	0.74	0.82	2.99	6624	604	4	96	0	0	0	logfile
✔	8PMJ	17761	2025-04-30	2023-06-28	2.81	2.56	2.83	2.8	0.004	0.64	0.0	0.05	15.66	0.00	1.958	6.81	0.00	2.4	97.6	0.0	0.56	0.64	0.83	3.00	2.8	0.003	0.58	0.0	0.04	16.56	0.00	2.003	4.88	2.88	2.9	97.1	0.0	1.52	0.38	0.64	0.84	2.41	8985	1133	2	0	9	3	0	logfile
✔	8JW4	36679	2025-04-30	2023-06-28	3.13	3.85	3.39	3.8	0.005	0.76	0.0	0.05	9.53	0.00	2.214	2.01	0.28	8.2	91.8	0.0	-4.11	0.63	0.70	2.66	3.8	0.002	0.62	0.0	0.04	13.94	0.00	2.552	4.27	1.49	4.9	95.1	0.0	-0.71	1.34	0.63	0.72	1.03	9582	1191	1	0	0	0	0	logfile
✔	8PM2	17756	2025-04-28	2023-06-28	2.92	2.98	2.94	3.3	0.006	0.78	0.0	0.05	13.03	0.01	2.132	4.04	0.00	2.4	97.6	0.0	0.56	0.74	0.80	3.49	3.3	0.003	0.62	0.0	0.04	15.99	0.00	2.528	5.99	2.74	2.6	97.4	0.0	1.28	0.54	0.74	0.84	2.81	7821	1009	6	0	2	0	0	logfile
✔	8JVH	36674	2025-04-30	2023-06-28	3.19	3.79	3.32	3.7	0.005	0.78	0.0	0.05	9.56	0.00	2.195	2.24	0.18	8.6	91.4	0.0	-4.48	0.65	0.74	1.98	3.7	0.003	0.58	0.0	0.04	13.64	0.00	2.431	3.81	1.29	5.3	94.7	0.0	-0.70	1.33	0.62	0.74	1.25	9699	1205	1	0	0	0	0	logfile

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