Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q6P	18192	2024-06-29	2023-08-14	3.53	3.92	3.77	3.9	0.002	0.48	0.0	0.04	14.14	0.00	2.234	5.07	0.11	2.4	97.6	0.0	1.50	0.55	0.78	1.46	3.9	0.003	0.63	0.0	0.04	16.46	0.00	2.206	9.43	2.91	3.0	97.0	0.0	1.00	1.00	0.56	0.81	1.41	16794	2104	12	0	5	0	0	logfile
✔	8TTE	41605	2024-06-24	2023-08-13	3.26	3.39	2.96	3.5	0.006	0.92	0.0	0.06	16.55	0.00	2.301	10.89	0.94	4.2	95.8	0.0	0.55	0.58	0.80	2.53	3.4	0.004	0.74	0.0	0.04	17.61	0.00	2.157	10.89	5.64	4.0	96.0	0.0	1.68	0.90	0.57	0.80	2.42	2991	385	2	0	0	0	0	logfile
✔	8TTB	41604	2024-06-30	2023-08-13	2.77	3.26	2.76	3.0	0.002	0.42	0.0	0.04	7.77	0.00	1.428	3.70	0.00	1.6	98.4	0.0	1.83	0.83	0.87	5.03	3.0	0.003	0.50	0.0	0.04	11.55	0.00	1.975	4.88	0.41	2.1	97.9	0.0	1.20	1.02	0.84	0.88	4.52	21905	1376	5	0	2	0	10903	logfile
✔	8TTH	41608	2024-06-24	2023-08-13	3.54	3.67	3.52	3.7	0.003	0.69	0.0	0.04	16.67	0.00	2.174	12.41	0.20	2.9	97.1	0.0	0.88	0.60	0.75	2.01	3.7	0.003	0.67	0.0	0.04	17.30	0.00	2.174	12.62	7.40	3.2	96.8	0.0	1.24	0.39	0.59	0.76	1.60	4620	603	3	0	0	0	0	logfile
✔	8TTG	41607	2024-06-24	2023-08-13	3.35	3.48	3.26	3.6	0.004	0.74	0.0	0.04	16.51	0.00	2.114	12.06	0.62	2.3	97.7	0.0	2.06	0.55	0.77	1.24	3.5	0.003	0.66	0.0	0.04	17.05	0.01	2.194	10.43	5.88	2.6	97.4	0.0	2.04	0.89	0.56	0.80	1.42	3026	389	2	0	0	0	0	logfile
✔	8TTF	41606	2024-06-24	2023-08-13	3.61	3.77	3.24	3.8	0.003	0.60	0.0	0.04	13.41	0.00	2.144	9.30	0.00	2.4	97.6	0.0	1.37	0.61	0.77	1.92	3.8	0.003	0.63	0.0	0.04	15.74	0.00	2.239	8.98	2.71	2.6	97.4	0.0	1.71	0.37	0.59	0.77	1.77	4763	621	3	0	0	0	0	logfile
✔	8TSW	41601	2024-06-30	2023-08-12	3.1	3.49	—	3.4	0.003	0.62	0.0	0.04	17.90	0.00	2.210	6.74	0.32	3.3	96.7	0.0	0.87	0.71	0.85	2.60	3.4	0.003	0.55	0.0	0.04	18.05	0.00	2.181	9.45	3.62	3.3	96.7	0.0	1.46	0.26	0.72	0.85	2.58	20326	2508	12	0	0	0	0	logfile
✔	8KE9	37150	2024-06-24	2023-08-11	3.76	4.61	3.81	3.9	0.003	0.70	0.0	0.08	14.47	0.00	1.931	12.94	7.55	5.7	94.1	0.2	-1.09	0.74	0.78	0.99	3.9	0.003	0.67	0.0	0.04	14.64	0.00	2.147	19.25	2.03	5.4	94.4	0.2	-0.37	1.83	0.76	0.86	1.46	4929	654	3	0	0	0	0	logfile
✔	8TSQ	41598	2024-06-25	2023-08-11	3.6	3.91	3.59	3.9	0.004	0.65	0.0	0.04	16.89	0.00	2.234	10.06	0.51	4.3	95.7	0.0	1.04	0.67	0.72	0.85	3.9	0.003	0.62	0.0	0.04	17.22	0.00	2.229	9.62	2.76	4.2	95.8	0.0	1.32	0.41	0.65	0.74	0.79	8918	1150	2	0	0	0	0	logfile
✔	8TSL	41595	2024-06-30	2023-08-11	3.4	3.46	—	3.4	0.004	0.67	0.0	0.05	17.49	0.01	2.231	6.97	0.47	3.0	97.0	0.0	0.93	0.73	0.86	2.61	3.4	0.003	0.58	0.0	0.04	17.73	0.00	2.175	9.24	4.06	2.8	97.2	0.0	1.72	1.13	0.72	0.86	2.54	21392	2646	12	0	0	0	0	logfile
✔	8KEi	37159	2024-06-26	2023-08-11	3.56	4.04	3.68	3.9	0.004	0.73	0.0	0.05	18.45	0.00	2.150	9.02	0.46	6.0	94.0	0.0	-0.29	0.69	0.83	1.56	3.9	0.003	0.66	0.0	0.04	17.53	0.00	2.135	9.41	3.98	6.8	93.2	0.0	-0.32	0.26	0.70	0.83	1.56	10209	1272	9	0	11	0	0	logfile
✔	8TSP	41597	2024-06-25	2023-08-11	3.9	4.19	3.93	4.2	0.004	0.75	0.0	0.05	16.52	0.01	2.201	10.09	0.72	3.0	97.0	0.0	0.50	0.68	0.74	0.50	4.2	0.004	0.97	1.0	0.05	17.48	0.00	2.094	11.09	4.41	4.0	96.0	0.0	1.92	1.22	0.70	0.76	0.58	8888	1146	2	0	0	0	0	logfile
✔	8Q6J	18188	2024-06-27	2023-08-11	3.3	4.21	3.41	3.8	0.007	0.76	0.0	0.05	15.11	0.01	2.029	19.52	5.69	9.6	90.4	0.1	-1.61	0.86	0.75	1.78	3.8	0.008	0.83	0.0	0.05	14.44	0.01	2.076	22.83	4.21	10.1	89.8	0.1	-1.69	1.29	0.87	0.80	1.67	11535	1494	8	0	9	0	0	logfile
✔	8TSi	41593	2024-06-30	2023-08-11	4.4	4.04	3.79	4.0	0.004	1.20	0.0	0.05	17.52	0.00	2.225	8.10	0.68	3.9	96.1	0.0	0.86	0.63	0.75	—	4.0	0.003	0.62	0.0	0.04	14.88	0.00	2.173	8.67	0.09	3.5	96.5	0.0	1.21	1.19	0.63	0.73	—	20248	2488	14	0	4	0	0	logfile
✔	8TSR	41599	2024-06-25	2023-08-11	3.9	4.25	3.96	4.2	0.005	0.83	0.0	0.05	16.02	0.01	2.219	11.20	0.51	3.2	96.8	0.0	0.80	0.71	0.76	0.88	4.2	0.003	0.73	0.0	0.04	17.02	0.00	2.175	11.65	4.30	3.2	96.8	0.0	1.60	1.22	0.70	0.76	0.77	8888	1146	2	0	0	0	0	logfile
✔	8TSS	41600	2024-06-25	2023-08-11	3.7	4.10	3.81	4.1	0.004	0.75	0.0	0.04	15.89	0.01	2.244	11.94	0.41	4.5	95.5	0.1	0.31	0.67	0.72	0.82	4.1	0.003	0.64	0.0	0.04	16.53	0.00	2.184	11.17	5.32	4.0	95.9	0.1	1.22	1.59	0.67	0.75	0.74	8918	1150	2	0	0	0	0	logfile
✔	8Q63	18183	2024-06-27	2023-08-10	3.68	3.75	3.69	3.8	0.007	1.03	0.0	0.09	18.50	0.00	2.121	12.49	0.09	4.5	95.5	0.0	0.60	0.74	0.73	1.25	3.8	0.003	0.63	0.0	0.04	19.27	0.00	2.147	13.90	2.44	3.8	96.2	0.0	0.66	0.45	0.74	0.74	1.36	11346	1244	6	69	1	0	0	logfile
✔	8KDC	37131	2024-06-29	2023-08-09	3.3	3.76	3.41	3.7	0.003	0.49	0.0	0.04	14.09	0.00	2.001	6.45	0.05	2.6	97.4	0.0	1.17	0.71	0.79	2.09	3.7	0.003	0.51	0.0	0.04	15.50	0.00	2.091	6.32	1.03	3.1	96.9	0.0	1.50	0.25	0.76	0.83	1.84	18808	2329	7	0	3	0	0	logfile
✔	8KDB	37130	2024-06-30	2023-08-09	2.7	2.73	2.75	2.8	0.003	0.53	0.0	0.04	13.33	0.00	1.999	5.31	0.04	2.0	98.0	0.0	1.35	0.78	0.86	2.98	2.8	0.003	0.53	0.0	0.04	15.53	0.00	2.023	5.24	0.93	1.7	98.3	0.0	2.07	1.14	0.77	0.87	2.54	20861	2584	8	0	3	0	0	logfile
✔	8TR3	41569	2024-06-28	2023-08-09	3.74	4.06	3.63	3.9	0.005	0.72	0.0	0.05	16.05	0.00	2.243	11.81	0.34	8.5	91.5	0.0	-0.94	0.79	0.80	1.34	3.9	0.004	0.71	0.0	0.04	16.47	0.00	2.203	12.89	4.36	8.6	91.4	0.0	-1.34	0.45	0.79	0.82	1.36	16401	2028	21	0	39	0	0	logfile

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