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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8JiT | 36327 | 2023-11-14 | 2023-05-27 | 2.91 | 3.75 | 2.95 | 3.5 | 0.005 | 0.79 | 1.0 | 0.05 | 14.61 | 0.00 | 2.204 | 30.83 | 4.69 | 5.5 | 94.0 | 0.5 | -0.47 | 0.69 | 0.80 | 2.15 | 3.5 | 0.003 | 0.77 | 0.0 | 0.04 | 15.69 | 0.00 | 2.118 | 10.39 | 2.50 | 3.8 | 96.1 | 0.1 | 0.61 | 1.24 | 0.69 | 0.82 | 1.85 | 9193 | 1176 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 8JiP | 36323 | 2023-11-14 | 2023-05-27 | 2.85 | 3.83 | 2.89 | 3.6 | 0.006 | 1.05 | 1.0 | 0.07 | 18.74 | 0.00 | 2.156 | 16.09 | 14.94 | 6.6 | 92.6 | 0.8 | -2.27 | 0.68 | 0.75 | 2.00 | 3.6 | 0.009 | 0.89 | 0.0 | 0.05 | 17.13 | 0.00 | 2.078 | 10.57 | 4.61 | 6.0 | 94.0 | 0.0 | -0.35 | 0.79 | 0.67 | 0.82 | 2.20 | 9362 | 1180 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 8JiU | 36328 | 2023-11-14 | 2023-05-27 | 2.76 | 3.73 | 2.83 | 3.5 | 0.008 | 1.14 | 4.0 | 0.08 | 18.24 | 0.01 | 2.217 | 11.25 | 15.73 | 6.4 | 92.3 | 1.3 | -2.62 | 0.69 | 0.80 | 2.29 | 3.5 | 0.003 | 0.80 | 0.0 | 0.04 | 15.88 | 0.00 | 2.140 | 12.15 | 3.12 | 4.1 | 95.6 | 0.3 | 0.07 | 0.79 | 0.67 | 0.79 | 2.26 | 9075 | 1177 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 8JiQ | 36324 | 2023-11-14 | 2023-05-27 | 3.4 | 3.86 | 3.37 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 15.17 | 0.00 | 2.202 | 10.10 | 2.47 | 4.1 | 95.5 | 0.4 | -0.03 | 0.82 | 0.80 | 2.08 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 15.86 | 0.00 | 2.182 | 10.98 | 0.45 | 3.5 | 96.5 | 0.0 | 0.45 | 0.46 | 0.82 | 0.83 | 1.85 | 8707 | 1134 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JiR | 36325 | 2023-11-14 | 2023-05-27 | 2.57 | 3.54 | 2.61 | 3.3 | 0.010 | 1.02 | 3.0 | 0.06 | 15.59 | 0.01 | 1.972 | 12.47 | 6.61 | 7.0 | 92.5 | 0.5 | -1.76 | 0.67 | 0.77 | 3.14 | 3.3 | 0.003 | 0.69 | 0.0 | 0.04 | 16.53 | 0.00 | 2.202 | 10.15 | 1.95 | 4.7 | 95.3 | 0.0 | 0.50 | 0.57 | 0.67 | 0.79 | 2.52 | 9014 | 1167 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 8SYi | 40874 | 2023-11-20 | 2023-05-25 | 2.94 | 3.75 | 3.00 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 20.53 | 0.01 | 2.138 | 6.87 | 6.06 | 7.7 | 91.9 | 0.3 | -1.52 | 0.89 | 0.87 | 2.21 | 3.5 | 0.007 | 0.71 | 0.0 | 0.05 | 19.97 | 0.00 | 2.100 | 9.03 | 5.75 | 8.6 | 91.2 | 0.3 | -1.02 | 0.59 | 0.87 | 0.90 | 2.15 | 29500 | 3537 | 12 | 91 | 3 | 0 | 0 | logfile |
✔ | 8JHU | 36294 | 2023-11-14 | 2023-05-25 | 3.1 | 3.30 | 3.08 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.64 | 0.01 | 2.200 | 10.88 | 0.82 | 5.4 | 94.1 | 0.5 | -0.27 | 0.69 | 0.84 | 2.83 | 3.3 | 0.005 | 0.60 | 0.0 | 0.04 | 16.05 | 0.00 | 2.160 | 10.95 | 0.55 | 6.4 | 93.6 | 0.0 | 0.04 | 0.37 | 0.70 | 0.87 | 3.37 | 6554 | 811 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P6A | 17462 | 2023-11-13 | 2023-05-25 | 3.63 | 3.93 | 3.43 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 17.40 | 0.00 | 2.161 | 10.48 | 0.29 | 2.4 | 97.6 | 0.0 | 2.80 | 0.57 | 0.81 | 1.41 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 17.37 | 0.00 | 2.146 | 11.22 | 0.00 | 3.1 | 96.9 | 0.0 | 2.99 | 0.85 | 0.57 | 0.81 | 1.29 | 3337 | 432 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P4B | 17404 | 2023-11-21 | 2023-05-20 | 3.2 | 3.70 | 3.17 | 3.5 | 0.003 | 0.70 | 0.0 | 0.05 | 14.65 | 0.00 | 1.698 | 14.92 | 0.03 | 5.2 | 94.8 | 0.0 | -0.88 | 0.85 | 0.84 | 2.62 | 3.5 | 0.004 | 0.68 | 0.0 | 0.04 | 16.52 | 0.00 | 2.040 | 15.38 | 0.21 | 5.6 | 94.4 | 0.0 | -0.19 | 1.16 | 0.84 | 0.85 | 2.17 | 35383 | 4219 | 22 | 81 | 9 | 0 | 0 | logfile |
✔ | 8P4A | 17403 | 2023-11-22 | 2023-05-20 | 3.6 | 4.57 | 3.57 | 3.7 | 0.005 | 0.84 | 16.0 | 0.09 | 15.16 | 0.01 | 1.959 | 14.95 | 3.72 | 4.6 | 95.2 | 0.2 | -0.87 | 0.90 | 0.84 | 1.75 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 15.34 | 0.00 | 2.089 | 14.88 | 0.18 | 4.8 | 95.1 | 0.0 | -0.04 | 1.19 | 0.91 | 0.85 | 1.53 | 36673 | 4372 | 22 | 86 | 9 | 0 | 0 | logfile |
✔ | 8JFZ | 36220 | 2023-11-18 | 2023-05-19 | 3.5 | 3.45 | 3.49 | 3.6 | 0.011 | 1.55 | 0.0 | 0.07 | 17.92 | 0.01 | 2.092 | 18.66 | 7.50 | 5.9 | 94.0 | 0.2 | -1.79 | 0.71 | 0.78 | 1.41 | 3.5 | 0.005 | 0.66 | 0.0 | 0.04 | 16.77 | 0.00 | 1.955 | 8.92 | 0.44 | 3.3 | 96.7 | 0.0 | 0.78 | 1.34 | 0.74 | 0.83 | 1.64 | 22340 | 2642 | 22 | 0 | 70 | 6 | 0 | logfile |
✔ | 8P3T | 17394 | 2023-11-16 | 2023-05-18 | 3.39 | 3.89 | 3.20 | 3.5 | 0.012 | 1.40 | 7.0 | 0.10 | 15.56 | 0.01 | 2.226 | 11.91 | 4.78 | 2.5 | 97.1 | 0.4 | -0.20 | 0.62 | 0.72 | 2.31 | 3.5 | 0.006 | 0.68 | 0.0 | 0.04 | 15.52 | 0.00 | 2.154 | 12.45 | 0.42 | 2.1 | 97.9 | 0.0 | 2.18 | 0.73 | 0.67 | 0.83 | 2.15 | 16861 | 2237 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P3o | 17387 | 2023-11-18 | 2023-05-18 | 2.9 | 4.09 | 2.95 | 3.3 | 0.003 | 0.72 | 0.0 | 0.04 | 17.21 | 0.00 | 2.204 | 7.12 | 0.41 | 3.9 | 96.1 | 0.0 | 1.02 | 0.78 | 0.89 | 2.31 | 3.3 | 0.003 | 0.70 | 0.0 | 0.04 | 17.22 | 0.00 | 2.223 | 7.57 | 1.14 | 4.1 | 95.9 | 0.0 | 2.93 | 0.55 | 0.78 | 0.88 | 2.09 | 21192 | 2656 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P3Q | 17392 | 2023-11-17 | 2023-05-18 | 2.95 | 3.72 | 3.13 | 3.5 | 0.010 | 1.37 | 2.0 | 0.08 | 18.14 | 0.01 | 2.310 | 13.78 | 9.79 | 5.9 | 93.2 | 1.0 | -1.51 | 0.69 | 0.84 | 2.07 | 3.5 | 0.004 | 0.74 | 0.0 | 0.04 | 16.83 | 0.00 | 2.148 | 13.15 | 3.58 | 3.5 | 96.2 | 0.2 | 1.41 | 2.23 | 0.63 | 0.79 | 2.16 | 18047 | 2299 | 19 | 0 | 16 | 7 | 0 | logfile |
✔ | 8P3P | 17389 | 2023-11-18 | 2023-05-18 | 2.5 | 3.25 | 2.58 | 3.0 | 0.003 | 0.63 | 0.0 | 0.03 | 16.19 | 0.00 | 2.267 | 5.98 | 0.86 | 4.1 | 95.9 | 0.0 | 3.26 | 0.76 | 0.89 | 2.76 | 3.0 | 0.003 | 0.66 | 0.0 | 0.04 | 16.49 | 0.00 | 2.338 | 6.27 | 1.18 | 3.6 | 96.4 | 0.0 | 3.84 | 0.22 | 0.73 | 0.85 | 2.51 | 21224 | 2656 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P3Z | 17400 | 2023-11-16 | 2023-05-18 | 3.46 | 3.90 | 3.32 | 3.6 | 0.013 | 1.65 | 2.0 | 0.11 | 14.12 | 0.02 | 2.217 | 8.69 | 1.02 | 4.4 | 95.3 | 0.4 | -1.65 | 0.56 | 0.57 | 0.42 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 15.47 | 0.00 | 2.050 | 12.88 | 0.30 | 2.8 | 97.2 | 0.0 | 1.76 | 1.88 | 0.66 | 0.82 | 1.32 | 16974 | 2284 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P3X | 17398 | 2023-11-16 | 2023-05-18 | 3.36 | 3.85 | 3.33 | 3.6 | 0.013 | 1.66 | 2.0 | 0.11 | 14.28 | 0.01 | 2.232 | 7.73 | 1.68 | 4.4 | 95.4 | 0.2 | -1.65 | 0.62 | 0.66 | 1.61 | 3.6 | 0.004 | 0.73 | 0.0 | 0.04 | 14.93 | 0.00 | 2.094 | 11.18 | 0.36 | 2.9 | 97.1 | 0.0 | 1.96 | 1.68 | 0.67 | 0.83 | 1.66 | 17035 | 2293 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P3W | 17397 | 2023-11-17 | 2023-05-18 | 3.53 | 3.95 | 3.35 | 3.6 | 0.012 | 1.63 | 19.0 | 0.13 | 15.45 | 0.02 | 1.988 | 8.93 | 3.17 | 3.0 | 96.9 | 0.1 | -0.44 | 0.65 | 0.75 | 2.71 | 3.6 | 0.004 | 0.67 | 0.0 | 0.04 | 15.68 | 0.00 | 2.125 | 13.10 | 1.06 | 1.9 | 98.1 | 0.0 | 1.36 | 0.86 | 0.67 | 0.80 | 2.14 | 17485 | 2251 | 24 | 0 | 14 | 33 | 0 | logfile |
✔ | 8P3Y | 17399 | 2023-11-16 | 2023-05-18 | 3.55 | 3.90 | 3.43 | 3.6 | 0.013 | 1.69 | 1.0 | 0.12 | 14.45 | 0.01 | 2.163 | 11.07 | 2.22 | 4.4 | 95.0 | 0.5 | -1.70 | 0.61 | 0.66 | 1.59 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 14.93 | 0.00 | 2.100 | 11.85 | 0.36 | 2.3 | 97.6 | 0.1 | 1.79 | 0.88 | 0.67 | 0.82 | 1.52 | 17012 | 2291 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P3U | 17395 | 2023-11-16 | 2023-05-18 | 3.77 | 4.35 | 3.68 | 3.9 | 0.012 | 1.43 | 10.0 | 0.10 | 15.17 | 0.01 | 2.166 | 13.39 | 3.81 | 2.5 | 96.9 | 0.6 | 0.03 | 0.60 | 0.66 | 1.33 | 3.9 | 0.003 | 0.72 | 0.0 | 0.04 | 15.42 | 0.00 | 2.073 | 16.33 | 0.36 | 2.0 | 97.8 | 0.2 | 1.42 | 0.79 | 0.63 | 0.75 | 0.95 | 16888 | 2241 | 8 | 0 | 0 | 0 | 0 | logfile |