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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8P3P | 17389 | 2023-11-18 | 2023-05-18 | 2.5 | 3.25 | 2.58 | 3.0 | 0.003 | 0.63 | 0.0 | 0.03 | 16.19 | 0.00 | 2.267 | 5.98 | 0.86 | 4.1 | 95.9 | 0.0 | 3.26 | 0.76 | 0.89 | 2.76 | 3.0 | 0.003 | 0.66 | 0.0 | 0.04 | 16.49 | 0.00 | 2.338 | 6.27 | 1.18 | 3.6 | 96.4 | 0.0 | 3.84 | 0.22 | 0.73 | 0.85 | 2.51 | 21224 | 2656 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P3V | 17396 | 2023-11-16 | 2023-05-18 | 3.53 | 3.91 | 3.30 | 3.6 | 0.011 | 1.33 | 3.0 | 0.10 | 15.53 | 0.01 | 2.259 | 11.55 | 5.25 | 2.9 | 96.6 | 0.6 | 0.15 | 0.62 | 0.70 | 2.12 | 3.6 | 0.005 | 0.67 | 0.0 | 0.04 | 15.23 | 0.00 | 2.191 | 11.82 | 0.66 | 1.8 | 98.2 | 0.0 | 2.40 | 0.68 | 0.68 | 0.83 | 2.00 | 16914 | 2247 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8SW7 | 40810 | 2023-11-16 | 2023-05-17 | 3.37 | 3.85 | 3.96 | 3.9 | 0.022 | 1.72 | 0.0 | 0.13 | 10.03 | 0.01 | 2.188 | 1.14 | 0.14 | 2.2 | 97.8 | 0.1 | 0.77 | 0.58 | 0.77 | 2.95 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 15.86 | 0.00 | 2.179 | 9.70 | 0.34 | 3.5 | 96.5 | 0.0 | -0.76 | 1.33 | 0.52 | 0.78 | 1.98 | 15133 | 1664 | 17 | 0 | 289 | 0 | 0 | logfile |
✔ | 8P34 | 17383 | 2023-11-13 | 2023-05-17 | 2.61 | 2.80 | 2.24 | 2.8 | 0.009 | 1.32 | 0.0 | 0.08 | 11.05 | 0.01 | 2.651 | 0.69 | 0.00 | 5.4 | 94.6 | 0.0 | -1.84 | 0.29 | 0.90 | 7.34 | 2.8 | 0.002 | 0.50 | 0.0 | 0.05 | 13.21 | 0.00 | 2.693 | 0.69 | 0.00 | 4.3 | 95.7 | 0.0 | -1.63 | 0.36 | 0.28 | 0.88 | 6.21 | 711 | 94 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JET | 36195 | 2023-11-17 | 2023-05-16 | 3.1 | 2.32 | 3.02 | 3.2 | 0.002 | 0.43 | 0.0 | 0.04 | 9.65 | 0.00 | 2.269 | 3.61 | 1.54 | 5.4 | 94.6 | 0.0 | -0.08 | 0.69 | 0.80 | 1.95 | 3.2 | 0.002 | 0.58 | 0.0 | 0.04 | 12.65 | 0.00 | 2.189 | 7.82 | 0.22 | 6.3 | 93.7 | 0.0 | 1.47 | 1.55 | 0.70 | 0.81 | 1.54 | 19526 | 2612 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JEU | 36196 | 2023-11-17 | 2023-05-16 | 3.5 | 4.02 | 3.58 | 3.9 | 0.002 | 0.52 | 0.0 | 0.04 | 15.90 | 0.00 | 2.202 | 6.95 | 0.17 | 5.0 | 94.7 | 0.3 | -0.27 | 0.71 | 0.81 | 2.03 | 3.9 | 0.004 | 0.61 | 0.0 | 0.04 | 15.79 | 0.00 | 2.154 | 8.52 | 0.46 | 5.3 | 94.5 | 0.2 | 1.09 | 0.41 | 0.72 | 0.81 | 1.69 | 19438 | 2640 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8SVF | 40789 | 2023-11-16 | 2023-05-16 | 3.2 | 4.13 | 3.32 | 3.5 | 0.003 | 0.53 | 0.0 | 0.03 | 25.01 | 0.00 | 2.220 | 6.36 | 1.28 | 1.6 | 98.4 | 0.0 | 2.82 | 0.85 | 0.83 | 1.74 | 3.5 | 0.003 | 0.59 | 0.0 | 0.03 | 26.30 | 0.00 | 2.221 | 8.84 | 0.21 | 2.7 | 97.3 | 0.0 | 2.51 | 0.67 | 0.86 | 0.85 | 1.24 | 15254 | 1189 | 13 | 295 | 0 | 0 | 0 | logfile |
✔ | 8P2S | 17373 | 2023-11-14 | 2023-05-16 | 2.4 | 2.06 | 2.43 | 1.8 | 0.003 | 0.54 | 0.0 | 0.04 | 12.82 | 0.00 | 2.120 | 8.76 | 3.01 | 4.7 | 95.2 | 0.1 | 0.29 | 0.79 | 0.75 | 4.06 | 1.8 | 0.004 | 0.64 | 0.0 | 0.04 | 16.38 | 0.00 | 2.090 | 13.16 | 1.17 | 5.8 | 94.1 | 0.2 | 0.46 | 0.52 | 0.80 | 0.79 | 3.73 | 9694 | 1201 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8JEC | 36185 | 2023-11-17 | 2023-05-15 | 3.1 | 3.61 | 3.15 | 3.5 | 0.002 | 0.40 | 0.0 | 0.04 | 9.75 | 0.00 | 2.196 | 4.85 | 1.03 | 4.1 | 95.8 | 0.1 | 0.28 | 0.70 | 0.82 | 2.48 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 12.74 | 0.00 | 2.153 | 7.87 | 0.38 | 4.1 | 95.8 | 0.1 | 1.83 | 0.49 | 0.72 | 0.84 | 1.65 | 19680 | 2632 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8P28 | 17359 | 2023-11-18 | 2023-05-15 | 2.77 | 2.35 | 2.80 | 2.1 | 0.005 | 0.64 | 0.0 | 0.05 | 11.46 | 0.00 | 1.795 | 6.79 | 2.15 | 10.0 | 89.8 | 0.2 | -1.36 | 0.78 | 0.77 | 3.56 | 2.1 | 0.004 | 0.67 | 0.0 | 0.04 | 15.52 | 0.00 | 1.924 | 7.82 | 2.24 | 6.9 | 93.1 | 0.0 | -0.73 | 0.97 | 0.80 | 0.80 | 2.61 | 21141 | 2584 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 8P2D | 17361 | 2023-11-14 | 2023-05-15 | 2.59 | 2.21 | 2.59 | 2.0 | 0.002 | 0.51 | 0.0 | 0.04 | 12.08 | 0.00 | 1.968 | 10.26 | 4.79 | 8.1 | 91.9 | 0.0 | -1.58 | 0.71 | 0.64 | 2.46 | 2.0 | 0.003 | 0.64 | 0.0 | 0.04 | 15.97 | 0.00 | 1.990 | 14.01 | 2.34 | 7.8 | 92.2 | 0.0 | -0.98 | 1.30 | 0.73 | 0.67 | 2.03 | 8793 | 1087 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8P2C | 17360 | 2023-11-18 | 2023-05-15 | 2.59 | 2.23 | 2.67 | 2.0 | 0.003 | 0.49 | 0.0 | 0.04 | 11.45 | 0.00 | 1.935 | 5.71 | 2.68 | 6.8 | 93.0 | 0.1 | -0.71 | 0.81 | 0.80 | 3.52 | 2.0 | 0.004 | 0.61 | 0.0 | 0.04 | 16.00 | 0.00 | 1.946 | 7.33 | 2.01 | 7.2 | 92.8 | 0.0 | -0.52 | 0.58 | 0.82 | 0.81 | 2.96 | 21173 | 2588 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 8P27 | 17358 | 2023-11-14 | 2023-05-15 | 2.73 | 2.25 | 2.73 | 2.1 | 0.004 | 0.55 | 0.0 | 0.04 | 12.00 | 0.00 | 1.936 | 6.22 | 5.43 | 8.3 | 91.7 | 0.0 | -2.06 | 0.79 | 0.77 | 3.73 | 2.1 | 0.004 | 0.64 | 0.0 | 0.05 | 16.27 | 0.00 | 1.880 | 9.10 | 4.15 | 7.8 | 92.2 | 0.0 | -1.45 | 0.49 | 0.81 | 0.79 | 2.90 | 8810 | 1089 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8P23 | 17357 | 2023-11-15 | 2023-05-14 | 3.17 | 2.45 | 3.19 | 2.2 | 0.004 | 0.69 | 2.0 | 0.05 | 11.32 | 0.01 | 2.090 | 5.91 | 4.71 | 5.8 | 93.7 | 0.5 | -0.94 | 0.75 | 0.75 | 3.06 | 2.2 | 0.004 | 0.72 | 0.0 | 0.05 | 15.18 | 0.00 | 2.069 | 8.18 | 0.41 | 7.3 | 92.3 | 0.4 | -0.88 | 0.58 | 0.78 | 0.79 | 2.67 | 11399 | 1401 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8SUR | 40776 | 2023-11-18 | 2023-05-13 | 3.1 | 3.44 | 3.20 | 3.4 | 0.007 | 0.85 | 8.0 | 0.08 | 13.78 | 0.01 | 1.256 | 7.20 | 0.65 | 3.9 | 95.7 | 0.4 | 1.04 | 0.57 | 0.79 | 3.03 | 3.4 | 0.003 | 0.57 | 1.0 | 0.05 | 15.16 | 0.00 | 1.883 | 7.54 | 0.32 | 3.5 | 96.3 | 0.2 | 1.26 | 1.07 | 0.57 | 0.83 | 3.20 | 23085 | 1417 | 6 | 0 | 15 | 0 | 11381 | logfile |
✔ | 8JD2 | 36173 | 2023-11-15 | 2023-05-12 | 2.8 | 2.97 | 2.79 | 3.0 | 0.002 | 0.44 | 0.0 | 0.04 | 13.33 | 0.00 | 2.213 | 4.22 | 0.20 | 4.9 | 95.1 | 0.0 | -0.38 | 0.66 | 0.79 | 3.20 | 3.0 | 0.003 | 0.55 | 0.0 | 0.04 | 14.64 | 0.00 | 2.137 | 6.33 | 2.73 | 6.3 | 93.7 | 0.0 | -0.19 | 0.44 | 0.67 | 0.82 | 3.09 | 10730 | 1501 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8JD6 | 36177 | 2023-11-17 | 2023-05-12 | 3.4 | 3.44 | — | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 15.11 | 0.00 | 2.218 | 12.40 | 0.35 | 5.9 | 94.0 | 0.0 | -0.74 | 0.62 | 0.65 | 0.86 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 15.84 | 0.00 | 2.073 | 15.45 | 0.17 | 7.7 | 92.2 | 0.0 | -1.05 | 1.58 | 0.67 | 0.73 | 1.39 | 17192 | 2312 | 8 | 0 | 1 | 0 | 0 | logfile |
✔ | 8JD5 | 36176 | 2023-11-17 | 2023-05-12 | 3.6 | 3.48 | — | 3.5 | 0.005 | 0.64 | 1.0 | 0.04 | 12.91 | 0.00 | 2.201 | 9.27 | 0.39 | 6.7 | 93.2 | 0.1 | -0.84 | 0.62 | 0.68 | 1.58 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 15.25 | 0.00 | 2.089 | 10.55 | 0.56 | 7.9 | 92.1 | 0.0 | -0.78 | 0.56 | 0.69 | 0.74 | 1.71 | 18028 | 2389 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 8JD3 | 36174 | 2023-11-16 | 2023-05-12 | 3.3 | 3.50 | 3.27 | 3.5 | 0.004 | 0.53 | 0.0 | 0.10 | 13.23 | 0.00 | 2.210 | 6.60 | 0.13 | 4.0 | 96.0 | 0.0 | -0.23 | 0.62 | 0.64 | 1.75 | 3.5 | 0.008 | 0.78 | 0.0 | 0.05 | 15.32 | 0.00 | 2.109 | 11.43 | 0.27 | 7.5 | 92.5 | 0.0 | -1.18 | 0.58 | 0.67 | 0.72 | 1.71 | 15770 | 2148 | 7 | 0 | 5 | 0 | 0 | logfile |
✔ | 8JD1 | 36172 | 2023-11-15 | 2023-05-12 | 3.7 | 3.87 | 3.63 | 3.8 | 0.002 | 0.50 | 0.0 | 0.04 | 12.91 | 0.00 | 2.228 | 6.47 | 0.21 | 6.8 | 93.2 | 0.0 | -0.72 | 0.66 | 0.71 | 1.21 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 14.93 | 0.00 | 2.168 | 11.41 | 0.53 | 7.7 | 92.3 | 0.0 | -0.94 | 0.55 | 0.65 | 0.70 | 1.39 | 10766 | 1508 | 4 | 0 | 7 | 0 | 0 | logfile |