Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QVC	14174	2024-12-27	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.6	0.008	0.83	0.0	0.06	18.13	0.00	2.552	9.38	5.29	5.5	94.5	0.0	-2.39	0.99	0.42	0.90	5.79	3255	405	3	0	0	0	0	logfile
✔	7QVM	14180	2024-12-28	2022-01-21	3.25	3.83	—	3.6	0.003	0.64	0.0	0.04	12.94	0.00	2.156	11.45	0.00	3.6	96.4	0.0	0.22	0.72	0.78	2.24	3.6	0.003	0.68	0.0	0.04	15.55	0.00	2.482	10.21	2.37	3.5	96.5	0.0	0.47	0.81	0.72	0.80	1.65	8528	1094	7	0	1	0	0	logfile
✔	7QVE	14175	2024-12-27	2022-01-21	3.3	2.47	—	3.1	0.009	0.92	2.0	0.06	13.32	0.00	1.612	10.74	0.76	6.0	93.8	0.2	-0.90	0.76	0.77	2.17	3.1	0.003	0.70	0.0	0.04	17.19	0.00	2.200	9.71	4.00	2.8	97.1	0.0	0.54	1.22	0.79	0.82	2.19	48322	6256	28	0	0	0	0	logfile
✔	7WoC	32648	2024-12-27	2022-01-21	3.35	3.49	—	3.4	0.002	0.48	0.0	0.04	9.58	0.00	2.288	6.75	4.60	6.3	93.7	0.0	-4.80	0.72	0.76	2.37	3.4	0.004	0.73	0.0	0.05	15.16	0.00	2.491	9.10	4.21	10.3	89.7	0.0	-3.07	2.06	0.75	0.84	2.61	4746	610	4	0	1	0	0	logfile
✔	7WoG	32651	2024-12-27	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.72	0.0	0.05	11.04	0.00	2.444	17.39	0.00	14.1	85.9	0.0	-2.82	0.98	0.54	0.54	—	3362	433	3	0	0	0	0	logfile
✔	7QVF	14176	2024-12-27	2022-01-21	3.64	3.54	3.42	4.1	0.012	2.10	22.0	0.12	15.51	0.01	2.525	0.00	0.53	6.0	94.0	0.0	-2.41	0.43	0.77	3.90	3.6	0.005	0.88	0.0	0.06	16.75	0.00	2.575	14.75	4.10	7.1	92.9	0.0	-2.76	3.85	0.39	0.74	3.60	6516	810	6	0	0	0	0	logfile
✔	7WNZ	32636	2024-12-28	2022-01-20	3.4	3.47	—	4.0	0.003	0.52	0.0	0.05	10.39	0.00	2.177	6.80	0.00	6.3	93.7	0.0	-3.33	0.51	0.70	4.51	4.0	0.002	0.59	0.0	0.05	12.62	0.00	2.467	6.80	0.64	6.5	93.5	0.0	-5.80	0.52	0.31	0.66	5.47	9300	650	10	0	0	0	4780	logfile
✔	7Wo0	32637	2024-12-30	2022-01-20	2.7	2.93	2.56	2.9	0.007	0.91	0.0	0.06	15.45	0.01	2.538	5.18	0.00	3.2	96.8	0.0	-3.84	0.55	0.81	5.89	2.9	0.004	0.56	0.0	0.05	16.61	0.00	2.538	3.10	0.76	2.4	97.6	0.0	-2.50	0.62	0.54	0.85	5.22	12964	910	14	0	0	0	6622	logfile
✔	7Wo9	32643	2024-12-30	2022-01-20	2.81	3.01	—	3.0	0.002	0.50	0.0	0.04	13.97	0.00	2.227	5.86	0.00	4.2	95.8	0.0	1.49	0.70	0.78	2.04	3.0	0.003	0.53	0.0	0.04	15.82	0.00	2.433	4.85	0.74	4.7	95.3	0.0	1.89	0.74	0.72	0.80	1.97	12743	1581	1	0	0	0	0	logfile
✔	7TMT	26002	2024-12-28	2022-01-20	3.8	4.02	—	3.9	0.005	0.65	0.0	0.04	12.45	0.00	2.109	10.83	0.19	4.7	95.2	0.1	1.20	0.86	0.85	2.16	3.9	0.003	0.63	0.0	0.04	14.53	0.00	2.319	9.40	2.92	3.5	96.4	0.0	1.37	1.26	0.86	0.85	1.71	53433	8221	32	0	1	0	0	logfile
✔	7Wo7	32641	2024-12-27	2022-01-20	3.8	3.99	—	3.9	0.003	0.71	0.0	0.04	11.24	0.00	2.163	6.93	8.82	9.7	90.3	0.0	-4.70	0.72	0.74	1.98	3.9	0.004	0.75	0.0	0.05	15.36	0.01	2.500	11.96	3.68	15.3	84.7	0.0	-3.25	1.79	0.74	0.76	2.16	4870	634	4	0	1	0	0	logfile
✔	7TMW	26003	2024-12-28	2022-01-20	3.2	2.40	3.16	3.2	0.003	0.70	0.0	0.05	13.22	0.01	2.193	9.31	0.00	2.6	97.4	0.0	-0.28	0.71	0.64	1.01	2.0	0.005	0.71	0.0	0.05	15.78	0.00	2.489	13.17	3.43	4.7	95.3	0.0	-0.20	0.50	0.73	0.69	0.76	7320	930	4	0	0	0	0	logfile
✔	7TMS	26001	2024-12-29	2022-01-20	3.8	3.09	—	3.3	0.004	0.66	0.0	0.04	12.97	0.00	2.199	14.14	0.08	3.3	96.6	0.0	1.17	0.82	0.78	2.20	3.3	0.003	0.71	0.0	0.05	15.58	0.00	2.451	13.15	2.81	2.9	97.1	0.0	1.13	0.44	0.82	0.78	1.88	57652	8226	32	0	1	0	0	logfile
✔	7TLZ	25991	2024-12-27	2022-01-19	3.3	3.47	3.24	3.4	0.011	1.30	0.0	0.08	9.09	0.01	2.581	0.87	0.31	2.8	97.2	0.0	1.02	0.68	0.81	5.51	3.4	0.003	0.62	0.0	0.05	12.42	0.00	2.618	3.78	0.31	3.7	96.3	0.0	0.55	1.01	0.66	0.86	5.52	3621	475	4	0	6	0	0	logfile
✔	7QV5	14167	2024-12-27	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.37	0.0	0.06	12.18	0.00	2.260	0.36	0.00	0.7	99.3	0.0	-2.06	0.88	0.50	0.89	6.33	5562	342	45	0	18	0	2997	logfile
✔	7TLY	25990	2024-12-27	2022-01-19	3.0	3.01	2.93	3.0	0.010	1.32	2.0	0.08	12.98	0.00	2.556	1.69	0.00	2.5	97.5	0.0	0.36	0.64	0.76	4.98	3.0	0.003	0.62	0.0	0.04	13.45	0.01	2.551	3.88	3.51	2.3	97.7	0.0	-1.26	1.04	0.68	0.82	4.76	3105	408	4	0	4	0	0	logfile
✔	7WNQ	32633	2024-12-28	2022-01-19	2.7	2.91	2.72	3.0	0.012	1.20	6.0	0.07	9.17	0.01	2.155	1.80	0.63	3.6	96.4	0.0	-5.53	0.68	0.86	4.76	3.0	0.002	0.61	0.0	0.04	14.00	0.00	2.618	2.98	1.90	2.3	97.7	0.0	1.90	1.23	0.66	0.85	3.50	8847	1104	3	0	0	0	0	logfile
✔	7QV6	14168	2024-12-27	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.41	0.0	0.06	12.08	0.00	2.506	1.45	0.00	0.0	100.0	0.0	0.74	0.42	0.41	0.86	6.38	4842	306	18	0	0	0	2556	logfile
✔	7TMR	26000	2024-12-29	2022-01-19	3.5	3.65	—	3.5	0.003	0.62	0.0	0.04	12.90	0.00	2.124	12.17	0.12	3.3	96.7	0.0	1.40	0.75	0.79	2.12	3.5	0.003	0.66	0.0	0.04	15.47	0.00	2.366	11.89	3.18	3.0	97.0	0.0	1.48	1.27	0.76	0.79	1.78	57795	8224	32	0	1	0	0	logfile
✔	7TMC	25995	2024-12-27	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	18.02	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.5	0.005	0.91	0.0	0.07	16.21	0.01	2.419	15.39	5.56	14.0	86.0	0.0	-4.26	1.85	0.35	0.76	4.23	3426	405	6	0	12	0	0	logfile

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