Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TFK	25875	2024-12-31	2022-01-06	3.25	3.36	—	3.3	0.003	0.65	0.0	0.04	16.01	0.01	2.092	10.12	0.13	3.2	96.8	0.0	0.18	0.69	0.63	1.06	3.2	0.004	0.66	0.0	0.04	17.39	0.00	1.888	13.59	1.68	4.0	96.0	0.0	0.53	0.45	0.71	0.68	1.33	14363	1680	14	45	9	0	0	logfile
✔	7TF5	25862	2024-12-28	2022-01-06	3.16	3.97	—	3.4	0.004	0.75	0.0	0.05	13.18	0.01	2.262	3.03	0.37	2.1	97.9	0.0	-0.17	0.86	0.83	2.19	3.4	0.004	0.57	0.0	0.04	13.69	0.00	2.497	5.87	0.59	2.0	98.0	0.0	0.72	0.57	0.87	0.86	2.12	50298	6228	48	0	120	0	0	logfile
✔	7TF2	25859	2024-12-28	2022-01-06	3.62	4.27	—	3.8	0.004	0.74	0.0	0.05	13.05	0.01	2.277	3.32	0.35	2.1	97.9	0.0	-0.12	0.86	0.82	1.53	3.8	0.002	0.58	0.0	0.04	13.85	0.00	2.383	6.96	1.03	2.0	98.0	0.0	0.62	0.64	0.86	0.84	1.50	50292	6228	48	0	120	0	0	logfile
✔	7TFL	25876	2024-12-30	2022-01-06	3.33	3.61	—	3.5	0.003	0.62	0.0	0.04	15.10	0.00	2.089	9.78	0.14	3.5	96.5	0.0	0.58	0.70	0.59	0.62	3.5	0.004	0.71	0.0	0.04	17.17	0.00	1.871	15.55	2.60	3.8	96.2	0.1	0.35	1.00	0.73	0.66	0.93	13690	1653	12	24	9	0	0	logfile
✔	7TF1	25858	2024-12-30	2022-01-06	3.57	4.05	—	3.9	0.004	0.77	0.0	0.06	12.71	0.01	2.300	2.67	0.36	2.5	97.5	0.0	-1.40	0.60	0.81	2.33	3.9	0.003	0.61	0.0	0.05	14.20	0.00	2.452	6.30	2.02	2.5	97.5	0.0	-0.37	0.73	0.61	0.83	1.51	12786	1608	12	0	12	0	0	logfile
✔	7TFB	25868	2024-12-27	2022-01-06	2.28	2.41	—	2.5	0.005	0.60	0.0	0.05	16.67	0.00	1.926	6.95	2.11	5.1	94.9	0.1	-0.03	0.48	0.67	4.05	2.5	0.003	0.58	0.0	0.04	16.78	0.00	1.901	15.77	3.03	5.0	95.0	0.0	0.73	0.44	0.72	0.86	4.37	49630	6328	42	0	28	0	140	logfile
✔	7TF9	25866	2024-12-28	2022-01-06	2.61	2.92	—	3.0	0.005	0.68	0.0	0.05	15.76	0.00	1.872	9.56	3.66	4.1	95.9	0.0	0.50	0.45	0.67	3.27	2.9	0.002	0.49	0.0	0.04	16.73	0.00	1.925	16.29	1.30	4.0	96.0	0.0	0.74	0.52	0.70	0.87	3.98	49868	6286	42	0	28	0	140	logfile
✔	7TF6	25863	2024-12-26	2022-01-06	2.15	2.26	—	2.3	0.002	0.51	0.0	0.04	16.47	0.00	2.048	4.68	1.34	3.7	96.3	0.0	0.26	0.48	0.71	5.34	2.3	0.003	0.57	0.0	0.04	17.22	0.00	1.851	10.74	2.31	4.7	95.3	0.0	0.35	0.35	0.71	0.87	5.61	43272	5400	36	0	24	0	120	logfile
✔	7WiX	32539	2024-12-28	2022-01-05	3.53	3.90	—	3.7	0.005	0.93	1.0	0.04	14.86	0.01	2.063	10.48	0.57	10.1	89.5	0.3	-2.81	0.70	0.87	1.91	3.7	0.003	0.76	0.0	0.04	16.01	0.00	2.364	7.23	3.30	7.9	92.0	0.1	0.54	0.97	0.70	0.86	1.48	8670	1147	4	0	3	0	0	logfile
✔	7WJ5	32543	2024-12-28	2022-01-05	3.72	3.15	—	3.2	0.004	0.55	0.0	0.04	10.79	0.00	2.173	7.85	3.05	4.1	95.9	0.0	1.05	0.62	0.80	2.62	3.2	0.003	0.61	0.0	0.04	14.33	0.00	2.514	8.43	3.27	3.2	96.8	0.0	0.79	0.38	0.63	0.80	2.19	8660	1129	6	0	0	0	0	logfile
✔	7WiV	32537	2024-12-28	2022-01-05	2.88	3.16	—	3.0	0.008	1.02	4.0	0.06	14.50	0.01	2.209	8.44	0.68	9.4	90.2	0.4	-5.21	0.69	0.88	3.24	3.0	0.003	0.73	0.0	0.04	14.98	0.00	2.364	5.02	1.48	7.2	92.7	0.1	-0.09	1.26	0.71	0.89	2.02	8646	1147	3	0	1	0	0	logfile
✔	7WiU	32536	2024-12-28	2022-01-05	3.48	3.87	—	3.7	0.004	0.94	5.0	0.05	14.54	0.00	2.070	12.01	2.16	11.7	87.4	0.9	-3.47	0.68	0.86	2.13	3.7	0.003	0.76	0.0	0.04	15.69	0.00	2.498	6.69	3.07	9.1	90.6	0.3	-0.30	1.26	0.69	0.86	1.68	8615	1147	2	0	0	0	0	logfile
✔	7QPG	14120	2024-12-29	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	6.89	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.4	0.002	0.66	0.0	0.04	12.86	0.00	2.421	8.70	0.91	2.7	97.3	0.0	1.20	0.79	0.88	0.75	0.32	57164	7156	6	0	0	0	0	logfile
✔	7WiT	32535	2024-12-28	2022-01-04	3.21	3.87	3.47	3.8	0.005	0.57	0.0	0.04	11.49	0.00	2.271	4.78	3.11	3.3	96.7	0.0	-0.91	0.61	0.77	2.46	3.8	0.002	0.54	0.0	0.04	13.87	0.00	2.555	4.27	2.44	2.2	97.8	0.0	2.53	0.63	0.62	0.79	1.38	8109	1133	2	0	2	0	0	logfile
✔	7WiJ	32531	2024-12-30	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.51	0.0	0.03	15.58	0.00	2.626	3.20	1.66	0.6	99.4	0.0	3.52	0.28	0.71	0.87	1.45	12396	1602	6	0	0	0	0	logfile
✔	7TDT	25838	2024-12-31	2022-01-03	4.0	4.13	—	4.0	0.002	0.57	0.0	0.04	13.40	0.00	1.908	10.09	0.00	8.2	91.7	0.1	-0.53	0.63	0.69	—	4.0	0.003	0.86	0.0	0.05	16.24	0.00	2.472	13.16	2.12	9.0	91.0	0.0	-1.25	1.34	0.65	0.73	—	14444	1818	1	0	0	0	0	logfile
✔	7QP9	14115	2024-12-29	2022-01-03	2.89	3.12	2.88	3.2	0.004	0.63	0.0	0.04	15.53	0.00	2.249	6.44	0.00	3.6	96.4	0.0	2.00	0.58	0.81	3.64	3.2	0.003	0.52	0.0	0.04	16.56	0.00	2.420	9.80	0.90	3.6	96.4	0.0	1.88	0.73	0.53	0.82	3.66	11087	654	6	0	4	127	5668	logfile
✔	7QPD	14119	2024-12-30	2022-01-03	3.73	3.98	—	3.9	0.005	0.81	0.0	0.05	12.54	0.00	2.225	9.51	0.09	4.9	95.0	0.1	-1.20	0.80	0.76	2.23	3.9	0.003	0.72	0.0	0.04	14.39	0.00	2.513	10.47	2.26	4.9	95.1	0.1	-0.73	2.24	0.82	0.78	1.94	11521	1544	7	0	10	0	0	logfile
✔	7Wi8	32527	2024-12-29	2022-01-03	4.17	4.59	—	4.4	0.008	1.00	0.0	0.06	14.72	0.01	2.021	5.40	1.22	14.2	85.7	0.1	-5.88	0.69	0.79	—	4.4	0.002	0.66	0.0	0.04	12.20	0.00	2.586	7.14	0.00	10.1	89.9	0.0	-2.79	1.53	0.68	0.76	—	9268	1446	4	0	4	0	0	logfile
✔	7WiH	32530	2024-12-29	2022-01-03	3.68	4.13	—	4.1	0.006	1.03	0.0	0.06	14.90	0.01	2.024	5.51	0.73	10.8	88.9	0.3	-6.08	0.77	0.78	2.12	4.1	0.003	0.71	0.0	0.04	14.83	0.00	2.604	4.15	3.41	10.6	89.4	0.0	-3.22	0.48	0.75	0.77	1.72	10002	1482	4	0	4	0	0	logfile

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