Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8DUL	27722	2024-06-28	2022-07-27	4.17	4.34	4.24	4.7	0.005	1.04	0.0	0.07	13.09	0.02	2.317	6.11	0.06	5.3	94.7	0.0	-2.03	0.56	0.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14203	1802	15	0	10	0	0	logfile
✘	8DTB	27695	2024-06-27	2022-07-25	3.14	3.27	3.11	3.2	0.003	0.62	0.0	0.04	18.08	0.00	2.175	9.05	0.99	1.9	98.1	0.0	1.18	0.66	0.74	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13724	1765	9	0	7	0	0	logfile
✘	8DRK	27677	2024-06-28	2022-07-21	2.95	3.45	3.10	3.4	0.006	0.84	0.0	0.05	19.55	0.01	2.212	5.78	0.28	2.0	98.0	0.0	0.83	0.62	0.81	1.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16443	1901	18	0	21	6	0	logfile
✘	7YJK	33873	2024-06-29	2022-07-20	3.2	3.33	3.18	3.3	0.008	0.89	0.0	0.05	14.22	0.01	2.223	8.05	0.21	7.1	92.1	0.7	-3.10	0.72	0.86	3.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17658	2236	10	0	4	0	0	logfile
✘	8AG4	15415	2024-06-26	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11155	1384	4	0	0	0	0	logfile
✘	8DQ0	27645	2024-06-30	2022-07-18	3.74	3.61	3.79	3.6	0.008	0.98	0.0	0.05	16.04	0.01	2.203	6.20	1.20	4.9	95.1	0.0	-1.54	0.53	0.72	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17129	1075	6	0	2	0	8445	logfile
✘	8DQ1	27646	2024-06-30	2022-07-18	4.1	3.85	3.29	3.9	0.011	1.10	3.0	0.06	19.21	0.01	2.082	14.69	0.87	5.7	94.3	0.0	-1.40	0.44	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17754	1075	8	36	2	0	8343	logfile
✘	8ADW	15372	2024-06-25	2022-07-11	2.95	2.93	2.87	3.0	0.009	1.46	0.0	0.07	22.42	0.01	2.469	8.01	23.33	7.7	92.3	0.0	-4.02	0.51	0.80	4.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6920	990	10	0	0	0	0	logfile
✘	7YFC	33785	2024-06-26	2022-07-08	3.0	3.40	3.05	3.4	0.005	0.66	0.0	0.04	18.01	0.00	2.198	5.98	0.09	2.5	97.5	0.0	1.05	0.65	0.82	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9882	1262	7	0	2	0	0	logfile
✘	8DL7	27498	2024-06-25	2022-07-07	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6586	909	6	0	4	1	0	logfile
✘	7YDQ	33756	2024-06-24	2022-07-04	4.04	4.32	4.02	4.4	0.006	0.83	0.0	0.04	17.50	0.01	2.262	10.34	0.57	3.2	96.8	0.0	1.21	0.46	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4778	598	1	0	1	0	0	logfile
✘	8DK5	27483	2024-06-28	2022-07-02	2.71	3.29	2.87	3.2	0.011	1.11	3.0	0.07	27.41	0.01	2.088	9.15	0.39	4.6	95.3	0.2	-0.97	0.74	0.79	3.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15618	1210	12	298	0	0	0	logfile
✘	8DJM	27461	2024-06-25	2022-07-01	3.23	3.66	3.31	3.6	0.029	1.53	2.0	1.04	32.65	0.00	1.844	8.23	0.82	3.7	96.3	0.0	-2.26	0.49	0.75	3.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7032	862	7	0	8	0	0	logfile
✘	8DJK	27460	2024-06-25	2022-06-30	3.33	3.77	3.32	3.7	0.029	1.52	1.0	1.03	32.03	0.01	1.327	7.25	0.82	5.0	95.0	0.0	-1.84	0.48	0.73	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7091	870	7	0	8	0	0	logfile
✘	7YAE	33710	2024-06-26	2022-06-28	3.37	3.61	3.35	3.7	0.005	0.74	1.0	0.05	14.62	0.00	2.207	12.85	0.92	5.2	94.8	0.0	-0.26	0.58	0.64	1.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9031	1146	7	0	4	0	0	logfile
✘	8DH6	27430	2024-06-27	2022-06-25	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12901	1560	16	0	17	0	0	logfile
✘	7Y8T	33685	2024-06-29	2022-06-24	2.9	3.12	2.98	3.1	0.004	0.63	1.0	0.04	16.97	0.00	2.218	4.76	1.21	6.0	93.8	0.2	-0.46	0.74	0.85	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16754	1978	4	37	4	0	0	logfile
✘	7Y89	33682	2024-06-25	2022-06-23	3.02	3.56	3.18	3.4	0.007	0.76	0.0	0.05	14.49	0.00	2.092	11.46	1.29	8.2	91.5	0.4	-1.39	0.69	0.85	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8641	1110	5	0	0	0	0	logfile
✘	8DBi	27285	2024-06-28	2022-06-14	2.0	2.07	2.03	2.0	0.012	1.17	0.0	0.06	18.16	0.04	1.910	5.92	1.15	4.3	95.7	0.0	0.57	0.73	0.87	6.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14496	1854	18	0	30	12	0	logfile
✘	8DAN	27271	2024-06-29	2022-06-13	4.74	5.06	4.76	5.0	0.003	0.53	0.0	0.04	13.83	0.00	1.929	10.23	0.00	4.5	95.5	0.0	-0.75	0.65	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68968	4472	24	0	12	0	33968	logfile

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