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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8GBJ | 29917 | 2024-01-18 | 2023-02-26 | 3.11 | 3.29 | 3.11 | 3.3 | 0.006 | 0.82 | 0.0 | 0.05 | 16.14 | 0.00 | 2.073 | 14.62 | 0.37 | 2.4 | 97.6 | 0.0 | 0.15 | 0.67 | 0.82 | 3.86 | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 15.82 | 0.00 | 2.065 | 12.02 | 1.74 | 1.4 | 98.6 | 0.0 | 0.46 | 0.93 | 0.67 | 0.82 | 2.95 | 7467 | 930 | 8 | 6 | 3 | 0 | 0 | logfile |
✔ | 7Y68 | 33637 | 2024-04-07 | 2022-06-18 | 2.87 | 3.37 | 3.03 | 3.3 | 0.005 | 0.70 | 0.0 | 0.05 | 22.41 | 0.01 | 2.213 | 11.36 | 0.09 | 5.3 | 94.7 | 0.0 | -1.61 | 0.68 | 0.82 | 3.50 | 3.3 | 0.004 | 0.62 | 0.0 | 0.04 | 15.90 | 0.00 | 2.182 | 8.98 | 1.61 | 5.4 | 94.6 | 0.0 | 0.27 | 1.19 | 0.65 | 0.81 | 2.88 | 10264 | 1300 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 8GBJ | 29917 | 2024-02-13 | 2023-02-26 | 3.11 | 3.29 | 3.11 | 3.3 | 0.006 | 0.82 | 0.0 | 0.05 | 16.14 | 0.00 | 2.073 | 14.62 | 0.37 | 2.4 | 97.6 | 0.0 | 0.15 | 0.67 | 0.82 | 3.86 | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 15.82 | 0.00 | 2.065 | 12.02 | 1.74 | 1.4 | 98.6 | 0.0 | 0.46 | 0.93 | 0.67 | 0.82 | 2.95 | 7467 | 930 | 8 | 6 | 3 | 0 | 0 | logfile |
✔ | 7Y68 | 33637 | 2023-09-30 | 2022-06-18 | 2.87 | 3.37 | 3.03 | 3.3 | 0.005 | 0.70 | 0.0 | 0.05 | 14.22 | 0.01 | 2.213 | 11.36 | 0.09 | 5.3 | 94.7 | 0.0 | -1.61 | 0.68 | 0.82 | 3.50 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 16.39 | 0.00 | 2.161 | 9.82 | 1.52 | 4.9 | 95.1 | 0.0 | 0.11 | 1.17 | 0.62 | 0.78 | 2.94 | 10264 | 1300 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 8GBJ | 29917 | 2024-03-11 | 2023-02-26 | 3.11 | 3.29 | 3.11 | 3.3 | 0.006 | 0.82 | 0.0 | 0.05 | 16.14 | 0.00 | 2.073 | 14.62 | 0.37 | 2.4 | 97.6 | 0.0 | 0.15 | 0.67 | 0.82 | 3.86 | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 15.82 | 0.00 | 2.065 | 12.02 | 1.74 | 1.4 | 98.6 | 0.0 | 0.46 | 0.93 | 0.67 | 0.82 | 2.95 | 7467 | 930 | 8 | 6 | 3 | 0 | 0 | logfile |
✔ | 8J1Q | 35930 | 2023-12-07 | 2023-04-13 | 3.3 | 4.10 | 3.20 | 3.9 | 0.030 | 1.93 | 0.0 | 0.05 | 28.59 | 0.00 | 2.043 | 8.92 | 0.28 | 7.1 | 92.9 | 0.0 | -1.02 | 0.73 | 0.64 | 2.45 | 3.9 | 0.004 | 1.35 | 0.0 | 0.04 | 28.53 | 0.00 | 2.158 | 15.99 | 0.56 | 6.9 | 93.1 | 0.0 | -0.84 | 0.48 | 0.78 | 0.77 | 2.04 | 5447 | 427 | 5 | 90 | 1 | 0 | 0 | logfile |
✔ | 8oi8 | 16888 | 2024-01-20 | 2023-03-22 | 2.28 | 2.38 | 2.21 | 2.3 | 0.004 | 0.58 | 0.0 | 0.04 | 12.07 | 0.00 | 1.798 | 3.42 | 0.65 | 1.4 | 98.6 | 0.0 | -1.50 | 0.72 | 0.87 | 5.56 | 2.3 | 0.005 | 0.64 | 0.0 | 0.05 | 15.08 | 0.00 | 1.752 | 4.16 | 1.83 | 0.8 | 99.2 | 0.0 | 1.31 | 1.47 | 0.74 | 0.91 | 5.62 | 14895 | 1815 | 15 | 0 | 10 | 585 | 0 | logfile |
✔ | 8oi8 | 16888 | 2024-02-16 | 2023-03-22 | 2.28 | 2.38 | 2.21 | 2.3 | 0.004 | 0.58 | 0.0 | 0.04 | 12.07 | 0.00 | 1.798 | 3.42 | 0.65 | 1.4 | 98.6 | 0.0 | -1.50 | 0.72 | 0.87 | 5.56 | 2.3 | 0.005 | 0.64 | 0.0 | 0.05 | 15.08 | 0.00 | 1.752 | 4.16 | 1.83 | 0.8 | 99.2 | 0.0 | 1.31 | 1.47 | 0.74 | 0.91 | 5.62 | 14895 | 1815 | 15 | 0 | 10 | 585 | 0 | logfile |
✔ | 8oi8 | 16888 | 2024-03-16 | 2023-03-22 | 2.28 | 2.38 | 2.21 | 2.3 | 0.004 | 0.58 | 0.0 | 0.04 | 12.07 | 0.00 | 1.798 | 3.42 | 0.65 | 1.4 | 98.6 | 0.0 | -1.50 | 0.72 | 0.87 | 5.56 | 2.3 | 0.005 | 0.64 | 0.0 | 0.05 | 15.08 | 0.00 | 1.752 | 4.16 | 1.83 | 0.8 | 99.2 | 0.0 | 1.31 | 1.47 | 0.74 | 0.91 | 5.62 | 14895 | 1815 | 15 | 0 | 10 | 585 | 0 | logfile |
✔ | 8oi8 | 16888 | 2024-04-09 | 2023-03-22 | 2.28 | 2.38 | 2.21 | 2.3 | 0.004 | 0.58 | 0.0 | 0.04 | 12.07 | 0.00 | 1.798 | 3.42 | 0.65 | 1.4 | 98.6 | 0.0 | -1.50 | 0.72 | 0.87 | 5.56 | 2.3 | 0.005 | 0.64 | 0.0 | 0.05 | 15.08 | 0.00 | 1.752 | 4.16 | 1.83 | 0.8 | 99.2 | 0.0 | 1.31 | 1.47 | 0.74 | 0.91 | 5.62 | 14895 | 1815 | 15 | 0 | 10 | 585 | 0 | logfile |
✔ | 8oi8 | 16888 | 2023-10-07 | 2023-03-22 | 2.28 | 2.38 | 2.21 | 2.3 | 0.004 | 0.58 | 0.0 | 0.04 | 12.07 | 0.00 | 1.798 | 3.42 | 0.65 | 1.4 | 98.6 | 0.0 | -1.50 | 0.72 | 0.87 | 5.56 | 2.3 | 0.005 | 0.66 | 0.0 | 0.05 | 15.05 | 0.00 | 1.739 | 4.06 | 1.05 | 0.7 | 99.3 | 0.0 | 1.29 | 2.13 | 0.74 | 0.91 | 5.56 | 14895 | 1815 | 15 | 0 | 10 | 585 | 0 | logfile |
✔ | 8GBJ | 29917 | 2023-08-10 | 2023-02-26 | 3.11 | 3.29 | 3.11 | 3.3 | 0.006 | 0.82 | 0.0 | 0.05 | 14.17 | 0.00 | 2.073 | 14.62 | 0.37 | 2.4 | 97.6 | 0.0 | 0.15 | 0.67 | 0.82 | 3.86 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 15.89 | 0.00 | 2.055 | 11.75 | 0.37 | 1.2 | 98.8 | 0.0 | 0.59 | 0.94 | 0.67 | 0.81 | 2.83 | 7467 | 930 | 8 | 6 | 3 | 0 | 0 | logfile |
✔ | 8oi8 | 16888 | 2023-11-16 | 2023-03-22 | 2.28 | 2.38 | 2.21 | 2.3 | 0.004 | 0.58 | 0.0 | 0.04 | 12.07 | 0.00 | 1.798 | 3.42 | 0.65 | 1.4 | 98.6 | 0.0 | -1.50 | 0.72 | 0.87 | 5.56 | 2.3 | 0.005 | 0.66 | 0.0 | 0.05 | 15.05 | 0.00 | 1.739 | 4.06 | 1.05 | 0.7 | 99.3 | 0.0 | 1.29 | 2.13 | 0.74 | 0.91 | 5.56 | 14895 | 1815 | 15 | 0 | 10 | 585 | 0 | logfile |
✔ | 8oi8 | 16888 | 2023-12-10 | 2023-03-22 | 2.28 | 2.38 | 2.21 | 2.3 | 0.004 | 0.58 | 0.0 | 0.04 | 12.07 | 0.00 | 1.798 | 3.42 | 0.65 | 1.4 | 98.6 | 0.0 | -1.50 | 0.72 | 0.87 | 5.56 | 2.3 | 0.005 | 0.66 | 0.0 | 0.05 | 15.05 | 0.00 | 1.739 | 4.06 | 1.05 | 0.7 | 99.3 | 0.0 | 1.29 | 2.13 | 0.74 | 0.91 | 5.56 | 14895 | 1815 | 15 | 0 | 10 | 585 | 0 | logfile |
✔ | 8GBJ | 29917 | 2023-10-03 | 2023-02-26 | 3.11 | 3.29 | 3.11 | 3.3 | 0.006 | 0.82 | 0.0 | 0.05 | 14.17 | 0.00 | 2.073 | 14.62 | 0.37 | 2.4 | 97.6 | 0.0 | 0.15 | 0.67 | 0.82 | 3.86 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 15.89 | 0.00 | 2.055 | 11.75 | 0.37 | 1.2 | 98.8 | 0.0 | 0.59 | 0.94 | 0.67 | 0.81 | 2.83 | 7467 | 930 | 8 | 6 | 3 | 0 | 0 | logfile |
✔ | 7Y68 | 33637 | 2023-12-09 | 2022-06-18 | 2.87 | 3.37 | 3.03 | 3.3 | 0.005 | 0.70 | 0.0 | 0.05 | 22.41 | 0.01 | 2.213 | 11.36 | 0.09 | 5.3 | 94.7 | 0.0 | -1.61 | 0.68 | 0.82 | 3.50 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 15.98 | 0.00 | 2.159 | 9.47 | 1.14 | 4.8 | 95.2 | 0.0 | 0.12 | 1.60 | 0.62 | 0.78 | 2.97 | 10264 | 1300 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 8GBJ | 29917 | 2023-11-14 | 2023-02-26 | 3.11 | 3.29 | 3.11 | 3.3 | 0.006 | 0.82 | 0.0 | 0.05 | 14.17 | 0.00 | 2.073 | 14.62 | 0.37 | 2.4 | 97.6 | 0.0 | 0.15 | 0.67 | 0.82 | 3.86 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 15.89 | 0.00 | 2.055 | 11.75 | 0.37 | 1.2 | 98.8 | 0.0 | 0.59 | 0.94 | 0.67 | 0.81 | 2.83 | 7467 | 930 | 8 | 6 | 3 | 0 | 0 | logfile |
✘ | 8J1Q | 35930 | 2024-01-17 | 2023-04-13 | 3.3 | 4.10 | 3.20 | 3.9 | 0.030 | 1.93 | 0.0 | 0.05 | 28.59 | 0.00 | 2.043 | 8.92 | 0.28 | 7.1 | 92.9 | 0.0 | -1.02 | 0.73 | 0.64 | 2.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5447 | 427 | 5 | 90 | 1 | 0 | 0 | logfile |
✔ | 8GBJ | 29917 | 2023-12-08 | 2023-02-26 | 3.11 | 3.29 | 3.11 | 3.3 | 0.006 | 0.82 | 0.0 | 0.05 | 16.14 | 0.00 | 2.073 | 14.62 | 0.37 | 2.4 | 97.6 | 0.0 | 0.15 | 0.67 | 0.82 | 3.86 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 15.83 | 0.00 | 2.072 | 12.02 | 0.25 | 1.4 | 98.6 | 0.0 | 0.65 | 0.94 | 0.67 | 0.82 | 2.88 | 7467 | 930 | 8 | 6 | 3 | 0 | 0 | logfile |
✔ | 8Soi | 40658 | 2023-07-10 | 2023-04-28 | 4.2 | 3.78 | — | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 15.47 | 0.00 | 2.090 | 9.52 | 0.09 | 3.2 | 96.7 | 0.1 | 1.61 | 0.66 | 0.64 | — | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 14.25 | 0.00 | 2.009 | 9.08 | 0.00 | 3.7 | 96.1 | 0.2 | 1.92 | 0.53 | 0.66 | 0.63 | — | 20708 | 1276 | 4 | 0 | 0 | 0 | 10465 | logfile |