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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5Lii | 4053 | 2023-07-03 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | 3.8 | 0.003 | 0.88 | 0.0 | 0.04 | 15.96 | 0.01 | 2.201 | 13.15 | 1.41 | 14.6 | 84.7 | 0.7 | -4.22 | 0.87 | 0.56 | 0.67 | 1.49 | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VV6 | 32139 | 2023-07-03 | 2021-11-04 | 3.3 | 3.47 | — | 3.5 | 0.010 | 1.38 | 0.0 | 0.07 | 19.04 | 0.01 | 2.291 | 4.89 | 10.37 | 5.2 | 94.8 | 0.0 | -4.22 | 0.62 | 0.83 | 1.64 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 17.06 | 0.00 | 2.195 | 6.88 | 0.00 | 3.3 | 96.7 | 0.0 | 2.95 | 0.67 | 0.65 | 0.86 | 1.49 | 2227 | 271 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7JVA | 22497 | 2023-07-03 | 2020-08-20 | 3.6 | 3.93 | 3.68 | 3.9 | 0.016 | 1.51 | 0.0 | 0.09 | 10.09 | 0.01 | 2.398 | 0.80 | 0.30 | 1.0 | 98.8 | 0.2 | 0.87 | 0.84 | 0.81 | 3.50 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 14.75 | 0.00 | 2.198 | 8.95 | 0.61 | 3.6 | 96.4 | 0.0 | -0.18 | 0.69 | 0.85 | 0.82 | 2.55 | 3248 | 420 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7R7N | 24299 | 2023-07-03 | 2021-06-25 | 3.95 | 4.08 | 3.93 | 4.1 | 0.010 | 1.24 | 0.0 | 0.07 | 9.48 | 0.00 | 2.553 | 0.78 | 0.45 | 3.2 | 96.8 | 0.0 | 0.00 | 0.81 | 0.77 | 3.23 | 4.0 | 0.004 | 0.75 | 0.0 | 0.05 | 14.46 | 0.00 | 2.255 | 8.72 | 0.45 | 5.6 | 94.4 | 0.0 | -1.27 | 1.32 | 0.83 | 0.80 | 2.47 | 2790 | 391 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7N8i | 24237 | 2023-07-03 | 2021-06-14 | 3.0 | 3.22 | 3.02 | 3.2 | 0.011 | 1.23 | 0.0 | 0.07 | 10.88 | 0.01 | 2.309 | 0.71 | 0.26 | 1.6 | 98.4 | 0.0 | 1.04 | 0.75 | 0.87 | 5.46 | 3.2 | 0.006 | 0.66 | 0.0 | 0.05 | 15.07 | 0.00 | 2.113 | 5.24 | 1.29 | 2.1 | 97.9 | 0.0 | 1.24 | 1.30 | 0.73 | 0.90 | 5.50 | 3600 | 445 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 7WD8 | 32434 | 2023-07-03 | 2021-12-21 | 4.3 | 3.48 | — | 3.5 | 0.002 | 0.51 | 0.0 | 0.04 | 6.43 | 0.00 | 2.246 | 8.80 | 0.00 | 4.1 | 95.7 | 0.2 | -0.96 | 0.60 | 0.61 | — | 3.4 | 0.005 | 0.84 | 0.0 | 0.05 | 12.81 | 0.01 | 2.128 | 19.11 | 0.00 | 7.2 | 92.6 | 0.2 | -0.68 | 1.67 | 0.64 | 0.68 | — | 4029 | 524 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CXR | 30495 | 2023-07-03 | 2020-09-02 | 3.4 | 3.32 | 3.43 | 3.7 | 0.007 | 0.87 | 1.0 | 0.06 | 16.56 | 0.00 | 2.199 | 12.99 | 3.39 | 6.6 | 93.1 | 0.3 | -2.27 | 0.52 | 0.54 | 1.33 | 3.6 | 0.003 | 0.75 | 0.0 | 0.04 | 18.18 | 0.00 | 2.283 | 11.73 | 0.00 | 4.1 | 95.9 | 0.0 | 1.92 | 1.57 | 0.59 | 0.62 | 1.16 | 5168 | 614 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WLC | 32581 | 2023-07-03 | 2022-01-13 | 4.0 | 4.24 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.71 | 0.00 | 2.198 | 15.62 | 0.00 | 6.1 | 93.9 | 0.0 | -1.35 | 0.71 | 0.77 | — | 4.2 | 0.004 | 0.80 | 0.0 | 0.05 | 16.00 | 0.00 | 2.188 | 18.56 | 0.56 | 8.3 | 91.7 | 0.0 | -1.72 | 0.54 | 0.72 | 0.78 | — | 3307 | 430 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JZM | 22533 | 2023-07-03 | 2020-09-02 | 3.5 | 3.74 | 3.50 | 3.7 | 0.015 | 1.38 | 0.0 | 0.08 | 9.29 | 0.01 | 2.420 | 1.01 | 0.00 | 2.0 | 98.0 | 0.0 | 0.75 | 0.75 | 0.78 | 4.01 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 14.65 | 0.00 | 2.187 | 9.13 | 0.00 | 3.9 | 96.1 | 0.0 | 0.33 | 1.25 | 0.76 | 0.80 | 3.36 | 2033 | 258 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 7EK1 | 31165 | 2023-07-03 | 2021-04-03 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.75 | — | — | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53500 | 6720 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LY0 | 23581 | 2023-07-03 | 2021-03-05 | 2.6 | 2.57 | 2.63 | 2.7 | 0.012 | 1.19 | 0.0 | 0.08 | 9.79 | 0.01 | 2.515 | 0.55 | 0.36 | 1.2 | 98.8 | 0.0 | 1.70 | 0.61 | 0.70 | 5.23 | 2.7 | 0.005 | 0.71 | 0.0 | 0.05 | 15.89 | 0.00 | 2.125 | 8.84 | 2.86 | 2.7 | 97.3 | 0.0 | 0.06 | 1.63 | 0.69 | 0.76 | 4.26 | 2805 | 354 | 5 | 0 | 6 | 0 | 0 | logfile |
✔ | 6oUC | 20202 | 2023-07-03 | 2019-05-04 | 2.8 | 3.00 | — | 3.0 | 0.008 | 1.15 | 1.0 | 0.08 | 9.03 | 0.01 | 2.131 | 6.96 | 0.00 | 3.5 | 96.5 | 0.0 | -2.32 | 0.62 | 0.88 | 5.44 | 3.0 | 0.003 | 0.57 | 0.0 | 0.05 | 14.54 | 0.01 | 2.233 | 4.42 | 0.96 | 2.7 | 97.3 | 0.0 | -0.27 | 1.18 | 0.64 | 0.90 | 3.37 | 3899 | 483 | 1 | 0 | 1 | 124 | 0 | logfile |
✔ | 5LiJ | 4054 | 2023-07-03 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.18 | 0.0 | 0.04 | 10.31 | 0.00 | 2.148 | 15.12 | 0.00 | 32.0 | 68.0 | 0.0 | -5.66 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JV2 | 22491 | 2023-07-03 | 2020-08-20 | 3.5 | 3.49 | 3.41 | 3.7 | 0.015 | 1.39 | 0.0 | 0.08 | 11.43 | 0.01 | 2.587 | 0.00 | 1.32 | 3.6 | 96.4 | 0.0 | 0.82 | 0.69 | 0.74 | 3.48 | 3.7 | 0.004 | 0.72 | 0.0 | 0.04 | 14.90 | 0.00 | 2.223 | 14.03 | 0.44 | 5.5 | 94.5 | 0.0 | -0.83 | 1.27 | 0.71 | 0.77 | 3.76 | 2151 | 282 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EiR | 28162 | 2023-07-03 | 2022-09-15 | 2.49 | 3.15 | 2.50 | 3.0 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.01 | 1.960 | 4.05 | 2.61 | 2.2 | 97.4 | 0.3 | -1.27 | 0.86 | 0.84 | 4.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4870 | 632 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EKE | 28200 | 2023-07-03 | 2022-09-20 | 3.36 | 3.79 | 3.34 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 10.50 | 0.00 | 2.313 | 5.20 | 2.71 | 2.5 | 97.2 | 0.3 | -0.29 | 0.78 | 0.72 | 2.45 | 3.7 | 0.004 | 0.71 | 0.0 | 0.04 | 14.39 | 0.00 | 2.233 | 13.10 | 1.36 | 4.5 | 95.2 | 0.3 | -0.82 | 0.66 | 0.78 | 0.73 | 2.06 | 4681 | 610 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZZ4 | 15034 | 2023-07-03 | 2022-05-25 | 2.63 | 3.04 | 2.56 | 2.2 | 0.008 | 1.05 | 0.0 | 0.05 | 17.04 | 0.00 | 2.035 | 5.21 | 0.27 | 3.3 | 96.7 | 0.0 | -0.79 | 0.86 | 0.84 | 4.14 | 2.2 | 0.003 | 0.54 | 0.0 | 0.04 | 17.07 | 0.00 | 1.948 | 10.15 | 1.59 | 3.7 | 96.3 | 0.0 | 0.70 | 0.28 | 0.87 | 0.85 | 3.99 | 3682 | 463 | 1 | 0 | 3 | 11 | 0 | logfile |
✔ | 7USB | 26731 | 2023-07-03 | 2022-04-23 | 3.1 | 3.28 | 3.18 | 3.3 | 0.013 | 1.72 | 0.0 | 0.11 | 10.69 | 0.01 | 2.590 | 1.61 | 1.39 | 5.5 | 94.5 | 0.0 | -0.28 | 0.59 | 0.76 | 5.40 | 3.3 | 0.005 | 0.80 | 0.0 | 0.05 | 13.73 | 0.00 | 2.361 | 5.78 | 0.69 | 5.5 | 94.5 | 0.0 | -1.74 | 0.61 | 0.61 | 0.84 | 5.05 | 1661 | 213 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 7BZX | 30262 | 2023-07-03 | 2020-04-28 | 4.0 | 4.19 | — | 3.2 | 0.019 | 2.22 | 9.0 | 0.12 | 8.56 | 0.01 | 2.485 | 2.40 | 0.00 | 6.6 | 92.1 | 1.3 | -2.90 | 0.47 | 0.25 | — | 2.8 | 0.006 | 1.18 | 0.0 | 0.05 | 9.20 | 0.01 | 2.035 | 27.91 | 0.00 | 24.1 | 75.8 | 0.1 | -4.93 | 2.97 | 0.75 | 0.58 | — | 5652 | 1154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZYZ | 15029 | 2023-07-03 | 2022-05-25 | 2.47 | 2.56 | 2.40 | 2.2 | 0.007 | 0.87 | 0.0 | 0.05 | 18.66 | 0.01 | 1.973 | 9.47 | 5.45 | 2.8 | 97.2 | 0.0 | -0.23 | 0.87 | 0.87 | 3.85 | 2.2 | 0.003 | 0.53 | 0.0 | 0.04 | 18.47 | 0.00 | 2.092 | 7.60 | 4.36 | 1.9 | 98.1 | 0.0 | 0.72 | 0.42 | 0.88 | 0.88 | 3.32 | 4349 | 541 | 1 | 0 | 2 | 38 | 0 | logfile |