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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7XP6 | 33366 | 2023-10-04 | 2022-05-03 | 3.01 | 2.40 | 3.14 | 2.1 | 0.003 | 0.59 | 0.0 | 0.04 | 12.08 | 0.01 | 2.100 | 7.69 | 0.00 | 2.6 | 97.4 | 0.0 | 1.78 | 0.74 | 0.75 | 2.85 | 2.1 | 0.003 | 0.61 | 0.0 | 0.04 | 15.16 | 0.00 | 2.202 | 9.62 | 0.22 | 2.9 | 97.1 | 0.0 | 1.56 | 0.46 | 0.75 | 0.77 | 2.17 | 8336 | 1051 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7XP6 | 33366 | 2023-11-14 | 2022-05-03 | 3.01 | 2.40 | 3.14 | 2.1 | 0.003 | 0.59 | 0.0 | 0.04 | 12.08 | 0.01 | 2.100 | 7.69 | 0.00 | 2.6 | 97.4 | 0.0 | 1.78 | 0.74 | 0.75 | 2.85 | 2.1 | 0.003 | 0.61 | 0.0 | 0.04 | 15.16 | 0.00 | 2.202 | 9.62 | 0.22 | 2.9 | 97.1 | 0.0 | 1.56 | 0.46 | 0.75 | 0.77 | 2.17 | 8336 | 1051 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7XP6 | 33366 | 2023-12-08 | 2022-05-03 | 3.01 | 2.40 | 3.14 | 2.1 | 0.003 | 0.59 | 0.0 | 0.04 | 13.31 | 0.01 | 2.100 | 7.69 | 0.00 | 2.6 | 97.4 | 0.0 | 1.78 | 0.74 | 0.75 | 2.85 | 2.1 | 0.004 | 0.61 | 0.0 | 0.04 | 14.83 | 0.00 | 2.215 | 9.26 | 0.44 | 3.1 | 96.9 | 0.0 | 1.43 | 0.46 | 0.75 | 0.77 | 2.38 | 8336 | 1051 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 5VA1 | 8650 | 2024-02-17 | 2017-03-24 | 3.7 | 5.99 | — | 4.4 | 0.008 | 1.02 | 0.0 | 0.06 | 11.84 | 0.00 | 1.715 | 8.09 | 1.30 | 4.6 | 95.4 | 0.0 | -3.52 | 0.65 | 0.78 | 0.25 | 4.5 | 0.003 | 0.87 | 0.0 | 0.05 | 15.11 | 0.00 | 2.140 | 18.87 | 2.86 | 1.8 | 98.2 | 0.0 | 0.14 | 2.72 | 0.66 | 0.83 | 0.25 | 17628 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VA1 | 8650 | 2024-03-17 | 2017-03-24 | 3.7 | 5.99 | — | 4.4 | 0.008 | 1.02 | 0.0 | 0.06 | 11.84 | 0.00 | 1.715 | 8.09 | 1.30 | 4.6 | 95.4 | 0.0 | -3.52 | 0.65 | 0.78 | 0.25 | 4.5 | 0.003 | 0.87 | 0.0 | 0.05 | 15.11 | 0.00 | 2.140 | 18.87 | 2.86 | 1.8 | 98.2 | 0.0 | 0.14 | 2.72 | 0.66 | 0.83 | 0.25 | 17628 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VA1 | 8650 | 2024-04-09 | 2017-03-24 | 3.7 | 5.99 | — | 4.4 | 0.008 | 1.02 | 0.0 | 0.06 | 11.84 | 0.00 | 1.715 | 8.09 | 1.30 | 4.6 | 95.4 | 0.0 | -3.52 | 0.65 | 0.78 | 0.25 | 4.5 | 0.003 | 0.87 | 0.0 | 0.05 | 15.11 | 0.00 | 2.140 | 18.87 | 2.86 | 1.8 | 98.2 | 0.0 | 0.14 | 2.72 | 0.66 | 0.83 | 0.25 | 17628 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VA1 | 8650 | 2023-07-08 | 2017-03-24 | 3.7 | 5.99 | — | 4.4 | 0.008 | 1.02 | 0.0 | 0.06 | 11.84 | 0.00 | 1.715 | 8.09 | 1.30 | 4.6 | 95.4 | 0.0 | -3.52 | 0.65 | 0.78 | 0.25 | 4.5 | 0.004 | 0.84 | 0.0 | 0.05 | 15.36 | 0.00 | 2.149 | 21.57 | 0.27 | 2.3 | 97.6 | 0.1 | 0.09 | 2.74 | 0.66 | 0.83 | 0.09 | 17628 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VA1 | 8650 | 2023-08-15 | 2017-03-24 | 3.7 | 5.99 | — | 4.4 | 0.008 | 1.02 | 0.0 | 0.06 | 11.84 | 0.00 | 1.715 | 8.09 | 1.30 | 4.6 | 95.4 | 0.0 | -3.52 | 0.65 | 0.78 | 0.25 | 4.5 | 0.004 | 0.84 | 0.0 | 0.05 | 15.36 | 0.00 | 2.149 | 21.57 | 0.27 | 2.3 | 97.6 | 0.1 | 0.09 | 2.74 | 0.66 | 0.83 | 0.09 | 17628 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VA1 | 8650 | 2023-10-08 | 2017-03-24 | 3.7 | 5.99 | — | 4.4 | 0.008 | 1.02 | 0.0 | 0.06 | 11.84 | 0.00 | 1.715 | 8.09 | 1.30 | 4.6 | 95.4 | 0.0 | -3.52 | 0.65 | 0.78 | 0.25 | 4.5 | 0.004 | 0.84 | 0.0 | 0.05 | 15.36 | 0.00 | 2.149 | 21.57 | 0.27 | 2.3 | 97.6 | 0.1 | 0.09 | 2.74 | 0.66 | 0.83 | 0.09 | 17628 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VA1 | 8650 | 2023-11-17 | 2017-03-24 | 3.7 | 5.99 | — | 4.4 | 0.008 | 1.02 | 0.0 | 0.06 | 11.84 | 0.00 | 1.715 | 8.09 | 1.30 | 4.6 | 95.4 | 0.0 | -3.52 | 0.65 | 0.78 | 0.25 | 4.5 | 0.004 | 0.84 | 0.0 | 0.05 | 15.36 | 0.00 | 2.149 | 21.57 | 0.27 | 2.3 | 97.6 | 0.1 | 0.09 | 2.74 | 0.66 | 0.83 | 0.09 | 17628 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VA1 | 8650 | 2023-12-11 | 2017-03-24 | 3.7 | 5.99 | — | 4.4 | 0.008 | 1.02 | 0.0 | 0.06 | 11.84 | 0.00 | 1.715 | 8.09 | 1.30 | 4.6 | 95.4 | 0.0 | -3.52 | 0.65 | 0.78 | 0.25 | 4.5 | 0.004 | 0.84 | 0.0 | 0.05 | 15.36 | 0.00 | 2.149 | 21.57 | 0.27 | 2.3 | 97.6 | 0.1 | 0.09 | 2.74 | 0.66 | 0.83 | 0.09 | 17628 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LV8 | 23529 | 2024-01-19 | 2021-02-24 | 3.4 | 3.85 | 3.57 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 27.12 | 0.00 | 1.334 | 3.06 | 0.17 | 2.7 | 97.3 | 0.0 | -3.26 | 0.70 | 0.78 | 0.97 | 3.9 | 0.004 | 0.59 | 0.0 | 0.03 | 27.54 | 0.00 | 2.232 | 9.32 | 1.50 | 1.7 | 98.3 | 0.0 | 2.06 | 0.58 | 0.70 | 0.79 | 1.09 | 10651 | 764 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 7LV8 | 23529 | 2024-02-15 | 2021-02-24 | 3.4 | 3.85 | 3.57 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 27.12 | 0.00 | 1.334 | 3.06 | 0.17 | 2.7 | 97.3 | 0.0 | -3.26 | 0.70 | 0.78 | 0.97 | 3.9 | 0.004 | 0.59 | 0.0 | 0.03 | 27.54 | 0.00 | 2.232 | 9.32 | 1.50 | 1.7 | 98.3 | 0.0 | 2.06 | 0.58 | 0.70 | 0.79 | 1.09 | 10651 | 764 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 7LV8 | 23529 | 2024-03-15 | 2021-02-24 | 3.4 | 3.85 | 3.57 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 27.12 | 0.00 | 1.334 | 3.06 | 0.17 | 2.7 | 97.3 | 0.0 | -3.26 | 0.70 | 0.78 | 0.97 | 3.9 | 0.004 | 0.59 | 0.0 | 0.03 | 27.54 | 0.00 | 2.232 | 9.32 | 1.50 | 1.7 | 98.3 | 0.0 | 2.06 | 0.58 | 0.70 | 0.79 | 1.09 | 10651 | 764 | 10 | 242 | 0 | 0 | 0 | logfile |
✘ | 8CS9 | 26960 | 2024-01-18 | 2022-05-12 | 2.74 | 1.95 | — | 1.6 | 0.006 | 0.85 | 0.0 | 0.05 | 18.63 | 0.01 | 2.218 | 10.20 | 3.66 | 2.2 | 97.5 | 0.3 | 0.33 | 0.82 | 0.81 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60944 | 7677 | 39 | 0 | 27 | 268 | 0 | logfile |
✔ | 7LV8 | 23529 | 2024-04-07 | 2021-02-24 | 3.4 | 3.85 | 3.57 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 27.12 | 0.00 | 1.334 | 3.06 | 0.17 | 2.7 | 97.3 | 0.0 | -3.26 | 0.70 | 0.78 | 0.97 | 3.9 | 0.004 | 0.59 | 0.0 | 0.03 | 27.54 | 0.00 | 2.232 | 9.32 | 1.50 | 1.7 | 98.3 | 0.0 | 2.06 | 0.58 | 0.70 | 0.79 | 1.09 | 10651 | 764 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 7LV8 | 23529 | 2023-07-05 | 2021-02-24 | 3.4 | 3.85 | 3.57 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 27.28 | 0.00 | 1.334 | 3.06 | 0.17 | 2.7 | 97.3 | 0.0 | -3.26 | 0.70 | 0.78 | 0.97 | 3.9 | 0.004 | 0.62 | 0.0 | 0.04 | 27.82 | 0.00 | 2.122 | 9.22 | 0.33 | 2.4 | 97.6 | 0.0 | 1.91 | 0.58 | 0.70 | 0.79 | 1.03 | 10651 | 764 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 7LV8 | 23529 | 2023-08-11 | 2021-02-24 | 3.4 | 3.85 | 3.57 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 27.28 | 0.00 | 1.334 | 3.06 | 0.17 | 2.7 | 97.3 | 0.0 | -3.26 | 0.70 | 0.78 | 0.97 | 3.9 | 0.004 | 0.62 | 0.0 | 0.04 | 27.82 | 0.00 | 2.122 | 9.22 | 0.33 | 2.4 | 97.6 | 0.0 | 1.91 | 0.58 | 0.70 | 0.79 | 1.03 | 10651 | 764 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 7LV8 | 23529 | 2023-09-30 | 2021-02-24 | 3.4 | 3.85 | 3.57 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 27.28 | 0.00 | 1.334 | 3.06 | 0.17 | 2.7 | 97.3 | 0.0 | -3.26 | 0.70 | 0.78 | 0.97 | 3.9 | 0.004 | 0.58 | 0.0 | 0.03 | 27.68 | 0.00 | 2.243 | 9.22 | 0.33 | 2.7 | 97.3 | 0.0 | 2.29 | 0.56 | 0.70 | 0.79 | 1.18 | 10651 | 764 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 7SCH | 25035 | 2023-07-05 | 2021-09-28 | 3.1 | 2.24 | 3.07 | 2.0 | 0.003 | 0.62 | 0.0 | 0.05 | 11.95 | 0.00 | 2.218 | 9.09 | 0.19 | 4.1 | 95.9 | 0.0 | 0.02 | 0.78 | 0.75 | 3.40 | 2.0 | 0.003 | 0.61 | 0.0 | 0.04 | 15.25 | 0.00 | 2.063 | 10.70 | 0.75 | 5.0 | 95.0 | 0.0 | 0.39 | 0.40 | 0.78 | 0.80 | 2.89 | 9711 | 1190 | 3 | 0 | 3 | 0 | 0 | logfile |