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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EKP | 28209 | 2024-03-18 | 2022-09-21 | 2.75 | 2.30 | 2.90 | 2.8 | 0.004 | 0.87 | 0.0 | 0.04 | 14.70 | 0.01 | 2.269 | 3.50 | 0.00 | 1.3 | 98.7 | 0.0 | -2.94 | 0.53 | 0.84 | 3.56 | 2.8 | 0.004 | 0.59 | 0.0 | 0.04 | 16.71 | 0.00 | 2.272 | 6.17 | 1.97 | 1.9 | 98.1 | 0.0 | 0.95 | 1.09 | 0.53 | 0.85 | 3.32 | 20448 | 2488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8EKP | 28209 | 2024-04-10 | 2022-09-21 | 2.75 | 2.30 | 2.90 | 2.8 | 0.004 | 0.87 | 0.0 | 0.04 | 14.70 | 0.01 | 2.269 | 3.50 | 0.00 | 1.3 | 98.7 | 0.0 | -2.94 | 0.53 | 0.84 | 3.56 | 2.8 | 0.004 | 0.59 | 0.0 | 0.04 | 16.71 | 0.00 | 2.272 | 6.17 | 1.97 | 1.9 | 98.1 | 0.0 | 0.95 | 1.09 | 0.53 | 0.85 | 3.32 | 20448 | 2488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8EKP | 28209 | 2023-12-12 | 2022-09-21 | 2.75 | 2.30 | 2.90 | 2.8 | 0.004 | 0.87 | 0.0 | 0.04 | 14.70 | 0.01 | 2.269 | 3.50 | 0.00 | 1.3 | 98.7 | 0.0 | -2.94 | 0.53 | 0.84 | 3.56 | 2.8 | 0.003 | 0.55 | 0.0 | 0.04 | 16.73 | 0.00 | 2.237 | 5.95 | 1.56 | 1.2 | 98.8 | 0.0 | 1.41 | 1.10 | 0.53 | 0.85 | 3.49 | 20448 | 2488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8C81 | 16468 | 2024-01-20 | 2023-01-18 | 3.3 | 3.77 | 3.41 | 3.7 | 0.007 | 0.64 | 0.0 | 0.05 | 15.20 | 0.00 | 2.225 | 3.97 | 0.00 | 3.7 | 96.3 | 0.0 | 0.64 | 0.67 | 0.82 | 2.60 | 3.7 | 0.002 | 0.52 | 0.0 | 0.04 | 15.57 | 0.00 | 2.169 | 4.39 | 0.94 | 3.3 | 96.7 | 0.0 | 1.01 | 0.26 | 0.74 | 0.88 | 2.18 | 15709 | 1938 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 8C81 | 16468 | 2024-02-16 | 2023-01-18 | 3.3 | 3.77 | 3.41 | 3.7 | 0.007 | 0.64 | 0.0 | 0.05 | 15.20 | 0.00 | 2.225 | 3.97 | 0.00 | 3.7 | 96.3 | 0.0 | 0.64 | 0.67 | 0.82 | 2.60 | 3.7 | 0.002 | 0.52 | 0.0 | 0.04 | 15.57 | 0.00 | 2.169 | 4.39 | 0.94 | 3.3 | 96.7 | 0.0 | 1.01 | 0.26 | 0.74 | 0.88 | 2.18 | 15709 | 1938 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 8C81 | 16468 | 2024-03-16 | 2023-01-18 | 3.3 | 3.77 | 3.41 | 3.7 | 0.007 | 0.64 | 0.0 | 0.05 | 15.20 | 0.00 | 2.225 | 3.97 | 0.00 | 3.7 | 96.3 | 0.0 | 0.64 | 0.67 | 0.82 | 2.60 | 3.7 | 0.002 | 0.52 | 0.0 | 0.04 | 15.57 | 0.00 | 2.169 | 4.39 | 0.94 | 3.3 | 96.7 | 0.0 | 1.01 | 0.26 | 0.74 | 0.88 | 2.18 | 15709 | 1938 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 8C81 | 16468 | 2024-04-09 | 2023-01-18 | 3.3 | 3.77 | 3.41 | 3.7 | 0.007 | 0.64 | 0.0 | 0.05 | 15.20 | 0.00 | 2.225 | 3.97 | 0.00 | 3.7 | 96.3 | 0.0 | 0.64 | 0.67 | 0.82 | 2.60 | 3.7 | 0.002 | 0.52 | 0.0 | 0.04 | 15.57 | 0.00 | 2.169 | 4.39 | 0.94 | 3.3 | 96.7 | 0.0 | 1.01 | 0.26 | 0.74 | 0.88 | 2.18 | 15709 | 1938 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 8C81 | 16468 | 2023-12-10 | 2023-01-18 | 3.3 | 3.77 | 3.41 | 3.7 | 0.007 | 0.64 | 0.0 | 0.05 | 15.20 | 0.00 | 2.225 | 3.97 | 0.00 | 3.7 | 96.3 | 0.0 | 0.64 | 0.67 | 0.82 | 2.60 | 3.7 | 0.002 | 0.52 | 0.0 | 0.04 | 15.39 | 0.00 | 2.154 | 4.49 | 0.12 | 3.1 | 96.9 | 0.0 | 1.11 | 0.26 | 0.74 | 0.88 | 2.10 | 15709 | 1938 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 8T23 | 40979 | 2024-01-17 | 2023-06-05 | 3.87 | 4.12 | 4.24 | 7.5 | 0.005 | 1.00 | 0.0 | 0.05 | 19.22 | 0.01 | 2.136 | 16.85 | 0.59 | 11.9 | 88.1 | 0.0 | -3.06 | 0.59 | 0.48 | 0.19 | 7.3 | 0.003 | 0.82 | 0.0 | 0.05 | 18.12 | 0.01 | 2.123 | 17.32 | 3.81 | 11.5 | 88.5 | 0.0 | -2.57 | 1.42 | 0.62 | 0.55 | -0.26 | 6451 | 781 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8T23 | 40979 | 2024-02-13 | 2023-06-05 | 3.87 | 4.12 | 4.24 | 7.5 | 0.005 | 1.00 | 0.0 | 0.05 | 19.22 | 0.01 | 2.136 | 16.85 | 0.59 | 11.9 | 88.1 | 0.0 | -3.06 | 0.59 | 0.48 | 0.19 | 7.3 | 0.003 | 0.82 | 0.0 | 0.05 | 18.12 | 0.01 | 2.123 | 17.32 | 3.81 | 11.5 | 88.5 | 0.0 | -2.57 | 1.42 | 0.62 | 0.55 | -0.26 | 6451 | 781 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8T23 | 40979 | 2024-03-11 | 2023-06-05 | 3.87 | 4.12 | 4.24 | 7.5 | 0.005 | 1.00 | 0.0 | 0.05 | 19.22 | 0.01 | 2.136 | 16.85 | 0.59 | 11.9 | 88.1 | 0.0 | -3.06 | 0.59 | 0.48 | 0.19 | 7.3 | 0.003 | 0.82 | 0.0 | 0.05 | 18.12 | 0.01 | 2.123 | 17.32 | 3.81 | 11.5 | 88.5 | 0.0 | -2.57 | 1.42 | 0.62 | 0.55 | -0.26 | 6451 | 781 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8T23 | 40979 | 2024-04-06 | 2023-06-05 | 3.87 | 4.12 | 4.24 | 7.5 | 0.005 | 1.00 | 0.0 | 0.05 | 19.22 | 0.01 | 2.136 | 16.85 | 0.59 | 11.9 | 88.1 | 0.0 | -3.06 | 0.59 | 0.48 | 0.19 | 7.3 | 0.003 | 0.82 | 0.0 | 0.05 | 18.12 | 0.01 | 2.123 | 17.32 | 3.81 | 11.5 | 88.5 | 0.0 | -2.57 | 1.42 | 0.62 | 0.55 | -0.26 | 6451 | 781 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8T23 | 40979 | 2023-12-08 | 2023-06-05 | 3.87 | 4.12 | 4.24 | 7.5 | 0.005 | 1.00 | 0.0 | 0.05 | 18.79 | 0.01 | 2.136 | 16.85 | 0.59 | 11.9 | 88.1 | 0.0 | -3.06 | 0.59 | 0.48 | 0.19 | 7.5 | 0.003 | 0.77 | 0.0 | 0.05 | 18.04 | 0.01 | 2.134 | 16.93 | 0.15 | 10.8 | 89.2 | 0.0 | -2.20 | 0.99 | 0.63 | 0.56 | -0.20 | 6451 | 781 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 8K38 | 36847 | 2024-02-25 | 2023-07-14 | 3.2 | 3.30 | 3.16 | 3.3 | 0.003 | 0.52 | 1.0 | 0.04 | 12.99 | 0.00 | 2.215 | 4.22 | 0.12 | 1.7 | 98.3 | 0.0 | 1.76 | 0.74 | 0.88 | 3.22 | 3.3 | 0.005 | 0.54 | 0.0 | 0.04 | 15.60 | 0.00 | 2.149 | 4.00 | 2.01 | 1.9 | 98.1 | 0.0 | 1.53 | 0.46 | 0.74 | 0.91 | 2.77 | 50172 | 6396 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8K38 | 36847 | 2024-03-25 | 2023-07-14 | 3.2 | 3.30 | 3.16 | 3.3 | 0.003 | 0.52 | 1.0 | 0.04 | 12.99 | 0.00 | 2.215 | 4.22 | 0.12 | 1.7 | 98.3 | 0.0 | 1.76 | 0.74 | 0.88 | 3.22 | 3.3 | 0.005 | 0.54 | 0.0 | 0.04 | 15.60 | 0.00 | 2.149 | 4.00 | 2.01 | 1.9 | 98.1 | 0.0 | 1.53 | 0.46 | 0.74 | 0.91 | 2.77 | 50172 | 6396 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TAU | 41142 | 2024-03-10 | 2023-06-27 | 3.5 | 3.03 | 3.36 | 1.8 | 0.006 | 0.79 | 0.0 | 0.00 | 7.52 | 0.01 | 2.188 | 4.55 | 0.00 | 2.1 | 97.9 | 0.0 | -2.34 | 0.73 | 0.66 | — | 2.3 | 0.003 | 0.67 | 0.0 | 0.00 | 4.65 | 0.00 | 2.053 | 9.28 | 0.00 | 11.9 | 88.1 | 0.0 | -2.02 | 0.69 | 0.78 | 0.73 | — | 54106 | 9002 | 25 | 0 | 4 | 0 | 18087 | logfile |
✔ | 8TAU | 41142 | 2024-04-05 | 2023-06-27 | 3.5 | 3.03 | 3.36 | 1.8 | 0.006 | 0.79 | 0.0 | 0.00 | 7.52 | 0.01 | 2.188 | 4.55 | 0.00 | 2.1 | 97.9 | 0.0 | -2.34 | 0.73 | 0.66 | — | 2.3 | 0.003 | 0.67 | 0.0 | 0.00 | 4.65 | 0.00 | 2.053 | 9.28 | 0.00 | 11.9 | 88.1 | 0.0 | -2.02 | 0.69 | 0.78 | 0.73 | — | 54106 | 9002 | 25 | 0 | 4 | 0 | 18087 | logfile |
✔ | 8TKi | 41352 | 2024-02-24 | 2023-07-25 | 3.6 | 4.33 | 3.84 | 3.9 | 0.002 | 0.47 | 0.0 | 0.04 | 16.76 | 0.00 | 0.845 | 19.42 | 0.07 | 1.6 | 98.4 | 0.0 | 2.93 | 0.77 | 0.65 | 1.27 | 3.9 | 0.007 | 0.66 | 0.0 | 0.04 | 16.22 | 0.00 | 1.746 | 13.84 | 1.98 | 4.4 | 95.6 | 0.0 | 1.52 | 1.45 | 0.85 | 0.82 | 1.45 | 145816 | 9072 | 8 | 0 | 12 | 0 | 72844 | logfile |
✔ | 8TAU | 41142 | 2023-12-08 | 2023-06-27 | 3.5 | 3.03 | 3.36 | 1.8 | 0.006 | 0.79 | 0.0 | 0.00 | 7.52 | 0.01 | 2.188 | 4.55 | 0.00 | 2.1 | 97.9 | 0.0 | -2.34 | 0.73 | 0.66 | — | 2.4 | 0.002 | 0.61 | 0.0 | 0.00 | 4.02 | 0.00 | 2.062 | 4.93 | 0.00 | 8.3 | 91.7 | 0.0 | -0.61 | 0.66 | 0.77 | 0.73 | — | 54106 | 9002 | 25 | 0 | 4 | 0 | 18087 | logfile |
✔ | 8SGT | 40467 | 2024-02-13 | 2023-04-13 | 3.6 | 3.99 | 3.64 | 3.7 | 0.005 | 0.75 | 0.0 | 0.05 | 13.35 | 0.01 | 2.090 | 4.53 | 0.00 | 2.2 | 97.8 | 0.0 | -1.14 | 0.57 | 0.67 | 1.72 | 3.7 | 0.008 | 0.72 | 0.0 | 0.05 | 15.43 | 0.01 | 2.139 | 15.66 | 2.48 | 5.2 | 94.7 | 0.1 | 0.34 | 1.50 | 0.59 | 0.76 | 1.28 | 7119 | 918 | 4 | 0 | 6 | 0 | 0 | logfile |