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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PM4 | 13520 | 2023-10-07 | 2021-09-01 | 2.49 | 2.26 | — | 2.5 | 0.003 | 0.55 | 0.0 | 0.04 | 16.98 | 0.00 | 2.237 | 4.75 | 1.06 | 4.9 | 95.1 | 0.0 | 0.76 | 0.79 | 0.88 | 5.85 | 2.5 | 0.003 | 0.53 | 0.0 | 0.04 | 16.71 | 0.00 | 2.255 | 3.88 | 1.33 | 5.4 | 94.6 | 0.0 | 0.82 | 0.12 | 0.80 | 0.90 | 5.93 | 14288 | 1724 | 12 | 0 | 8 | 60 | 0 | logfile |
✔ | 8QFD | 18382 | 2024-03-15 | 2023-09-04 | 2.2 | 2.62 | 2.28 | 2.5 | 0.004 | 0.60 | 0.0 | 0.04 | 22.98 | 0.00 | 1.804 | 2.04 | 0.95 | 1.6 | 98.4 | 0.0 | 0.87 | 0.77 | 0.90 | 5.55 | 2.5 | 0.005 | 0.64 | 0.0 | 0.04 | 22.63 | 0.01 | 1.877 | 2.44 | 1.12 | 1.3 | 98.7 | 0.0 | 0.99 | 0.12 | 0.77 | 0.90 | 5.51 | 125372 | 6253 | 97 | 3393 | 166 | 2164 | 0 | logfile |
✔ | 8QFD | 18382 | 2024-04-09 | 2023-09-04 | 2.2 | 2.62 | 2.28 | 2.5 | 0.004 | 0.60 | 0.0 | 0.04 | 22.98 | 0.00 | 1.804 | 2.04 | 0.95 | 1.6 | 98.4 | 0.0 | 0.87 | 0.77 | 0.90 | 5.55 | 2.5 | 0.005 | 0.64 | 0.0 | 0.04 | 22.63 | 0.01 | 1.877 | 2.44 | 1.12 | 1.3 | 98.7 | 0.0 | 0.99 | 0.12 | 0.77 | 0.90 | 5.51 | 125372 | 6253 | 97 | 3393 | 166 | 2164 | 0 | logfile |
✔ | 7PM4 | 13520 | 2023-07-07 | 2021-09-01 | 2.49 | 2.26 | — | 2.5 | 0.003 | 0.55 | 0.0 | 0.04 | 16.98 | 0.00 | 2.237 | 4.75 | 1.06 | 4.9 | 95.1 | 0.0 | 0.76 | 0.79 | 0.88 | 5.85 | 2.5 | 0.003 | 0.53 | 0.0 | 0.04 | 16.71 | 0.00 | 2.255 | 3.88 | 1.33 | 5.4 | 94.6 | 0.0 | 0.82 | 0.12 | 0.80 | 0.90 | 5.93 | 14288 | 1724 | 12 | 0 | 8 | 60 | 0 | logfile |
✔ | 7PM4 | 13520 | 2023-08-13 | 2021-09-01 | 2.49 | 2.26 | — | 2.5 | 0.003 | 0.55 | 0.0 | 0.04 | 16.98 | 0.00 | 2.237 | 4.75 | 1.06 | 4.9 | 95.1 | 0.0 | 0.76 | 0.79 | 0.88 | 5.85 | 2.5 | 0.003 | 0.53 | 0.0 | 0.04 | 16.71 | 0.00 | 2.255 | 3.88 | 1.33 | 5.4 | 94.6 | 0.0 | 0.82 | 0.12 | 0.80 | 0.90 | 5.93 | 14288 | 1724 | 12 | 0 | 8 | 60 | 0 | logfile |
✔ | 7T2E | 25611 | 2024-02-13 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.48 | 0.0 | 0.04 | 16.27 | 0.00 | 2.223 | 2.35 | 2.36 | 0.6 | 99.4 | 0.0 | 0.37 | 0.12 | 0.36 | 0.86 | 4.66 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T2E | 25611 | 2024-03-10 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.48 | 0.0 | 0.04 | 16.27 | 0.00 | 2.223 | 2.35 | 2.36 | 0.6 | 99.4 | 0.0 | 0.37 | 0.12 | 0.36 | 0.86 | 4.66 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PM4 | 13520 | 2023-11-16 | 2021-09-01 | 2.49 | 2.26 | — | 2.5 | 0.003 | 0.55 | 0.0 | 0.04 | 16.95 | 0.00 | 2.237 | 4.75 | 1.06 | 4.9 | 95.1 | 0.0 | 0.76 | 0.79 | 0.88 | 5.85 | 2.5 | 0.002 | 0.53 | 0.0 | 0.04 | 16.63 | 0.00 | 2.255 | 3.91 | 1.86 | 5.6 | 94.4 | 0.0 | 0.80 | 0.12 | 0.80 | 0.90 | 5.96 | 14288 | 1724 | 12 | 0 | 8 | 60 | 0 | logfile |
✔ | 7T2E | 25611 | 2024-04-05 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.48 | 0.0 | 0.04 | 16.27 | 0.00 | 2.223 | 2.35 | 2.36 | 0.6 | 99.4 | 0.0 | 0.37 | 0.12 | 0.36 | 0.86 | 4.66 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T2E | 25611 | 2024-01-17 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.48 | 0.0 | 0.04 | 16.27 | 0.00 | 2.223 | 2.35 | 2.36 | 0.6 | 99.4 | 0.0 | 0.37 | 0.12 | 0.36 | 0.86 | 4.66 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NKJ | 12441 | 2024-03-25 | 2021-02-18 | 2.17 | 2.16 | — | 2.1 | 0.005 | 0.59 | 0.0 | 0.05 | 17.26 | 0.00 | 1.958 | 2.88 | 1.05 | 1.8 | 98.2 | 0.1 | 1.04 | 0.80 | 0.89 | 6.04 | 2.1 | 0.004 | 0.54 | 0.0 | 0.04 | 17.05 | 0.00 | 1.772 | 2.88 | 0.88 | 1.7 | 98.2 | 0.1 | 1.21 | 0.13 | 0.80 | 0.90 | 5.95 | 45605 | 2945 | 20 | 0 | 11 | 516 | 22478 | logfile |
✔ | 7NKJ | 12441 | 2023-07-19 | 2021-02-18 | 2.17 | 2.16 | — | 2.1 | 0.005 | 0.59 | 0.0 | 0.05 | 16.78 | 0.00 | 1.958 | 2.88 | 1.05 | 1.8 | 98.2 | 0.1 | 1.04 | 0.80 | 0.89 | 6.04 | 2.1 | 0.003 | 0.52 | 0.0 | 0.04 | 16.74 | 0.00 | 1.809 | 2.97 | 1.09 | 1.5 | 98.4 | 0.1 | 1.26 | 0.13 | 0.80 | 0.90 | 5.95 | 45605 | 2945 | 20 | 0 | 11 | 516 | 22478 | logfile |
✔ | 8GCC | 29930 | 2023-11-18 | 2023-03-01 | 2.94 | 3.15 | 2.96 | 3.1 | 0.007 | 1.04 | 0.0 | 0.04 | 19.90 | 0.00 | 1.942 | 4.30 | 2.54 | 3.6 | 96.4 | 0.0 | 1.52 | 0.73 | 0.85 | 3.48 | 3.1 | 0.003 | 0.74 | 0.0 | 0.04 | 19.94 | 0.00 | 1.942 | 4.43 | 2.64 | 3.6 | 96.4 | 0.0 | 1.58 | 0.13 | 0.69 | 0.84 | 3.44 | 22336 | 1414 | 6 | 48 | 2 | 0 | 10631 | logfile |
✔ | 7NKJ | 12441 | 2023-08-26 | 2021-02-18 | 2.17 | 2.16 | — | 2.1 | 0.005 | 0.59 | 0.0 | 0.05 | 16.78 | 0.00 | 1.958 | 2.88 | 1.05 | 1.8 | 98.2 | 0.1 | 1.04 | 0.80 | 0.89 | 6.04 | 2.1 | 0.003 | 0.52 | 0.0 | 0.04 | 16.74 | 0.00 | 1.809 | 2.97 | 1.09 | 1.5 | 98.4 | 0.1 | 1.26 | 0.13 | 0.80 | 0.90 | 5.95 | 45605 | 2945 | 20 | 0 | 11 | 516 | 22478 | logfile |
✔ | 8HoB | 34924 | 2024-04-08 | 2022-12-09 | 2.19 | 2.69 | 2.23 | 2.6 | 0.008 | 0.75 | 4.0 | 0.07 | 17.24 | 0.00 | 2.230 | 3.31 | 1.23 | 3.1 | 96.9 | 0.0 | 0.68 | 0.66 | 0.85 | 5.42 | 2.6 | 0.003 | 0.55 | 0.0 | 0.05 | 17.31 | 0.00 | 2.189 | 3.31 | 1.66 | 3.3 | 96.7 | 0.0 | 0.69 | 0.13 | 0.73 | 0.89 | 5.59 | 13449 | 1622 | 4 | 0 | 0 | 333 | 0 | logfile |
✔ | 7NKJ | 12441 | 2023-10-20 | 2021-02-18 | 2.17 | 2.16 | — | 2.1 | 0.005 | 0.59 | 0.0 | 0.05 | 16.78 | 0.00 | 1.958 | 2.88 | 1.05 | 1.8 | 98.2 | 0.1 | 1.04 | 0.80 | 0.89 | 6.04 | 2.1 | 0.003 | 0.52 | 0.0 | 0.04 | 16.74 | 0.00 | 1.809 | 2.97 | 1.09 | 1.5 | 98.4 | 0.1 | 1.26 | 0.13 | 0.80 | 0.90 | 5.95 | 45605 | 2945 | 20 | 0 | 11 | 516 | 22478 | logfile |
✔ | 7NKJ | 12441 | 2024-02-24 | 2021-02-18 | 2.17 | 2.16 | — | 2.1 | 0.005 | 0.59 | 0.0 | 0.05 | 17.26 | 0.00 | 1.958 | 2.88 | 1.05 | 1.8 | 98.2 | 0.1 | 1.04 | 0.80 | 0.89 | 6.04 | 2.1 | 0.004 | 0.54 | 0.0 | 0.04 | 17.05 | 0.00 | 1.772 | 2.88 | 0.88 | 1.7 | 98.2 | 0.1 | 1.21 | 0.13 | 0.80 | 0.90 | 5.95 | 45605 | 2945 | 20 | 0 | 11 | 516 | 22478 | logfile |
✔ | 8G6G | 29767 | 2024-04-08 | 2023-02-15 | 2.93 | 3.16 | 2.92 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 28.34 | 0.00 | 2.238 | 4.36 | 1.16 | 2.1 | 97.9 | 0.0 | 2.83 | 0.86 | 0.86 | 2.41 | 3.1 | 0.004 | 0.55 | 0.0 | 0.03 | 28.33 | 0.00 | 2.267 | 4.10 | 2.18 | 2.0 | 98.0 | 0.0 | 2.63 | 0.13 | 0.88 | 0.89 | 2.52 | 12985 | 825 | 11 | 314 | 0 | 0 | 0 | logfile |
✔ | 8G6G | 29767 | 2024-03-15 | 2023-02-15 | 2.93 | 3.16 | 2.92 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 28.34 | 0.00 | 2.238 | 4.36 | 1.16 | 2.1 | 97.9 | 0.0 | 2.83 | 0.86 | 0.86 | 2.41 | 3.1 | 0.004 | 0.55 | 0.0 | 0.03 | 28.33 | 0.00 | 2.267 | 4.10 | 2.18 | 2.0 | 98.0 | 0.0 | 2.63 | 0.13 | 0.88 | 0.89 | 2.52 | 12985 | 825 | 11 | 314 | 0 | 0 | 0 | logfile |
✔ | 8TJQ | 41308 | 2024-01-18 | 2023-07-24 | 3.4 | 4.09 | 3.45 | 3.4 | 0.005 | 0.63 | 0.0 | 0.03 | 23.78 | 0.00 | 1.883 | 19.77 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.85 | — | 3.4 | 0.008 | 0.72 | 0.0 | 0.04 | 23.57 | 0.01 | 1.835 | 21.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.13 | 0.92 | 0.90 | — | 9296 | 0 | 2 | 433 | 28 | 0 | 0 | logfile |