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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7SiC | 25140 | 2024-04-17 | 2021-10-13 | 2.51 | 2.61 | — | 2.6 | 0.003 | 0.58 | 0.0 | 0.04 | 17.75 | 0.00 | 2.151 | 6.37 | 3.04 | 1.8 | 98.2 | 0.0 | 2.29 | 0.60 | 0.60 | 1.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44484 | 5546 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8ESC | 28575 | 2024-04-17 | 2022-10-13 | 3.1 | 3.13 | 3.05 | 3.2 | 0.002 | 0.51 | 0.0 | 0.04 | 14.00 | 0.00 | 2.156 | 6.96 | 0.02 | 5.0 | 95.0 | 0.0 | -0.12 | 0.79 | 0.79 | 2.12 | 3.1 | 0.002 | 0.54 | 0.0 | 0.04 | 15.89 | 0.00 | 2.036 | 8.62 | 1.44 | 4.9 | 95.1 | 0.0 | 0.57 | 0.49 | 0.83 | 0.83 | 1.77 | 43279 | 5300 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 3JD6 | 6425 | 2024-04-17 | 2016-04-12 | 4.1 | 5.00 | — | 4.6 | 0.026 | 2.70 | 32.0 | 0.12 | 14.71 | 0.02 | 1.693 | 5.06 | 0.00 | 13.3 | 86.1 | 0.6 | -3.14 | 0.60 | 0.42 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 13.91 | 0.00 | 1.955 | 11.39 | 0.00 | 14.2 | 85.8 | 0.0 | -2.22 | 2.14 | 0.85 | 0.80 | — | 43088 | 2672 | 16 | 0 | 0 | 0 | 21216 | logfile |
✔ | 7RDZ | 24428 | 2024-04-17 | 2021-07-12 | 3.6 | 4.40 | — | 3.9 | 0.004 | 0.62 | 0.0 | 0.04 | 13.79 | 0.00 | 1.855 | 6.12 | 0.00 | 5.2 | 94.8 | 0.0 | -0.55 | 0.88 | 0.77 | 1.81 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 14.60 | 0.00 | 1.756 | 9.08 | 1.01 | 5.8 | 94.2 | 0.0 | -0.34 | 1.22 | 0.88 | 0.76 | 1.76 | 41820 | 2551 | 11 | 71 | 10 | 0 | 20348 | logfile |
✘ | 6GEJ | 4395 | 2024-04-17 | 2018-04-26 | 3.6 | 3.77 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 18.74 | 0.00 | 1.491 | 9.10 | 3.93 | 4.6 | 95.4 | 0.0 | -2.70 | 0.82 | 0.77 | 0.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43702 | 4683 | 29 | 308 | 151 | 0 | 0 | logfile |
✘ | 7E8H | 31019 | 2024-04-17 | 2021-03-01 | 4.5 | 4.06 | 4.44 | 3.7 | 0.002 | 0.62 | 0.0 | 0.04 | 14.21 | 0.00 | 2.089 | 18.26 | 0.00 | 6.9 | 93.0 | 0.1 | -0.78 | 0.73 | 0.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44894 | 5576 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6GEN | 4396 | 2024-04-17 | 2018-04-27 | 3.6 | 4.67 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 20.64 | 0.01 | 2.109 | 5.89 | 8.77 | 3.9 | 96.0 | 0.0 | -4.51 | 0.78 | 0.58 | -0.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44481 | 4683 | 29 | 346 | 151 | 0 | 0 | logfile |
✘ | 7VoT | 32059 | 2024-04-17 | 2021-10-14 | 2.9 | 3.04 | — | 3.0 | 0.006 | 0.80 | 0.0 | 0.04 | 15.28 | 0.01 | 2.147 | 9.03 | 0.37 | 1.5 | 98.5 | 0.0 | 2.64 | 0.76 | 0.82 | 4.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44984 | 4594 | 128 | 0 | 152 | 0 | 0 | logfile |
✔ | 8JCH | 36162 | 2024-04-17 | 2023-05-11 | 2.7 | 3.42 | 2.84 | 3.2 | 0.002 | 0.54 | 0.0 | 0.04 | 18.22 | 0.00 | 2.031 | 8.60 | 2.29 | 4.3 | 95.7 | 0.0 | 0.88 | 0.81 | 0.82 | 1.90 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 18.25 | 0.00 | 2.017 | 8.90 | 2.40 | 4.6 | 95.4 | 0.0 | 0.62 | 0.45 | 0.79 | 0.82 | 2.06 | 42732 | 5119 | 26 | 99 | 11 | 0 | 0 | logfile |
✔ | 6SL0 | 10233 | 2024-04-17 | 2019-08-16 | 3.7 | 3.74 | — | 3.7 | 0.011 | 0.82 | 2.0 | 0.05 | 14.88 | 0.01 | 1.031 | 9.04 | 5.39 | 7.5 | 92.4 | 0.1 | -3.09 | 0.73 | 0.76 | 1.93 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 16.59 | 0.00 | 2.183 | 8.47 | 3.13 | 4.1 | 95.9 | 0.0 | 1.71 | 0.90 | 0.77 | 0.83 | 1.18 | 41860 | 5276 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 6QUM | 4640 | 2024-04-17 | 2019-02-27 | 3.25 | 3.47 | — | 3.4 | 0.007 | 1.10 | 0.0 | 0.06 | 10.75 | 0.01 | 2.095 | 4.88 | 0.82 | 6.7 | 93.2 | 0.0 | -3.78 | 0.83 | 0.87 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44900 | 5874 | 27 | 0 | 3 | 0 | 0 | logfile |
✘ | 6RLA | 4917 | 2024-04-17 | 2019-05-01 | 3.9 | 4.09 | 3.89 | 3.9 | 0.007 | 1.16 | 0.0 | 0.06 | 11.43 | 0.01 | 2.116 | 3.84 | 0.35 | 7.9 | 92.1 | 0.0 | -3.78 | 0.84 | 0.77 | 1.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43034 | 5500 | 4 | 0 | 10 | 0 | 0 | logfile |
✔ | 8K5P | 36908 | 2024-04-17 | 2023-07-23 | 2.8 | 3.48 | 2.88 | 3.2 | 0.002 | 0.56 | 0.0 | 0.04 | 18.20 | 0.00 | 2.104 | 8.46 | 2.24 | 4.5 | 95.5 | 0.0 | 0.74 | 0.81 | 0.82 | 1.68 | 3.2 | 0.004 | 0.64 | 0.0 | 0.04 | 18.52 | 0.00 | 2.029 | 10.00 | 2.76 | 5.3 | 94.6 | 0.0 | 0.32 | 0.48 | 0.81 | 0.84 | 2.15 | 42713 | 5127 | 26 | 96 | 11 | 0 | 0 | logfile |
✔ | 5oA1 | 3727 | 2024-04-17 | 2017-06-20 | 4.4 | 5.36 | — | 4.5 | 0.027 | 1.76 | 1.0 | 0.07 | 19.19 | 0.01 | 0.473 | 26.25 | 8.67 | 5.4 | 93.4 | 1.2 | -1.92 | 0.70 | 0.49 | — | 4.6 | 0.011 | 0.80 | 0.0 | 0.05 | 15.82 | 0.00 | 2.025 | 23.93 | 0.00 | 5.5 | 94.3 | 0.2 | -0.13 | 3.30 | 0.78 | 0.66 | — | 43459 | 5668 | 39 | 105 | 7 | 0 | 0 | logfile |
✘ | 8JYo | 36728 | 2024-04-17 | 2023-07-03 | 3.2 | 3.48 | 3.07 | 3.2 | 0.005 | 0.60 | 0.0 | 0.05 | 14.11 | 0.00 | 2.061 | 5.57 | 0.00 | 3.6 | 96.4 | 0.0 | 0.32 | 0.77 | 0.77 | 2.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34233 | 4193 | 23 | 0 | 76 | 0 | 0 | logfile |
✔ | 8SZJ | 40918 | 2024-04-17 | 2023-05-29 | 3.35 | 4.19 | 3.46 | 4.0 | 0.004 | 0.66 | 2.0 | 0.05 | 14.37 | 0.01 | 1.297 | 5.32 | 0.15 | 5.5 | 94.5 | 0.0 | -0.42 | 0.49 | 0.77 | 1.68 | 4.0 | 0.004 | 0.78 | 0.0 | 0.05 | 17.20 | 0.00 | 2.141 | 15.41 | 4.30 | 6.2 | 93.7 | 0.1 | 0.80 | 0.70 | 0.51 | 0.79 | 1.60 | 36204 | 4656 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 5VKQ | 8702 | 2024-04-17 | 2017-04-22 | 3.55 | 3.85 | 3.58 | 3.6 | 0.008 | 1.18 | 0.0 | 0.05 | 12.11 | 0.01 | 2.057 | 11.24 | 0.72 | 8.9 | 90.8 | 0.3 | -5.28 | 0.83 | 0.77 | 1.94 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 13.73 | 0.00 | 2.084 | 12.07 | 2.18 | 8.5 | 91.5 | 0.1 | -0.53 | 1.42 | 0.84 | 0.81 | 1.59 | 41900 | 5996 | 8 | 0 | 32 | 0 | 0 | logfile |
✔ | 6TFK | 10493 | 2024-04-17 | 2019-11-14 | 2.9 | 3.06 | 2.94 | 3.1 | 0.002 | 0.47 | 0.0 | 0.04 | 9.64 | 0.00 | 1.917 | 7.45 | 0.24 | 9.1 | 90.9 | 0.0 | -2.49 | 0.72 | 0.77 | 2.62 | 3.0 | 0.003 | 0.56 | 0.0 | 0.04 | 13.84 | 0.00 | 1.920 | 7.66 | 1.87 | 6.7 | 93.2 | 0.1 | -0.77 | 0.72 | 0.72 | 0.79 | 2.42 | 43237 | 2724 | 5 | 0 | 1 | 0 | 21544 | logfile |
✘ | 6S0Z | 10077 | 2024-04-17 | 2019-06-18 | 2.3 | 2.39 | — | 2.4 | 0.006 | 0.80 | 0.0 | 0.06 | 23.76 | 0.00 | 2.007 | 2.91 | 6.96 | 7.1 | 92.8 | 0.0 | -2.89 | 0.62 | 0.73 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145796 | 3106 | 31 | 3019 | 1 | 0 | 57218 | logfile |
✘ | 6SML | 10243 | 2024-04-17 | 2019-08-22 | 3.4 | 3.43 | — | 3.4 | 0.009 | 1.02 | 0.0 | 0.06 | 14.67 | 0.01 | 2.243 | 3.62 | 0.09 | 6.7 | 93.3 | 0.1 | -3.42 | 0.74 | 0.83 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22152 | 2810 | 8 | 0 | 4 | 0 | 0 | logfile |