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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 3JC5 | 6535 | 2023-10-19 | 2015-11-24 | 4.7 | 5.02 | — | 4.8 | 0.009 | 1.54 | 5.0 | 0.06 | 12.17 | 0.01 | 0.300 | 46.29 | 0.63 | 9.4 | 88.9 | 1.7 | -4.21 | 0.76 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40041 | 5039 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PQ5 | 13587 | 2023-09-29 | 2021-09-16 | 3.17 | 3.58 | 3.09 | 3.4 | 0.005 | 0.85 | 0.0 | 0.05 | 15.55 | 0.01 | 2.255 | 3.50 | 2.82 | 4.5 | 95.3 | 0.2 | -0.13 | 0.85 | 0.87 | 5.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8512 | 1047 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YW7 | 10960 | 2024-04-05 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 8.08 | 0.01 | 2.034 | 2.17 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 0.99 | 0.0 | 0.02 | 6.66 | 0.00 | 2.225 | 16.71 | 0.00 | 11.5 | 88.3 | 0.2 | -3.14 | 5.69 | 0.84 | 0.64 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 6oUA | 20200 | 2024-04-05 | 2019-05-04 | 4.18 | 4.32 | — | 4.3 | 0.008 | 1.37 | 1.0 | 0.07 | 13.97 | 0.01 | 2.294 | 7.03 | 2.35 | 17.4 | 82.3 | 0.3 | -5.89 | 0.72 | 0.79 | — | 4.3 | 0.003 | 0.84 | 0.0 | 0.05 | 14.33 | 0.00 | 2.171 | 10.55 | 0.00 | 12.5 | 87.5 | 0.0 | -1.88 | 1.15 | 0.71 | 0.76 | — | 5208 | 637 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6E1P | 8960 | 2024-03-15 | 2018-07-10 | 3.7 | 3.93 | 3.55 | 3.9 | 0.010 | 1.30 | 1.0 | 0.06 | 14.00 | 0.01 | 1.571 | 10.25 | 0.18 | 6.9 | 92.9 | 0.2 | -5.32 | 0.47 | 0.68 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10697 | 1292 | 6 | 0 | 21 | 2 | 0 | logfile |
✔ | 6YW7 | 10960 | 2023-10-03 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 6.70 | 0.01 | 2.034 | 2.17 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 1.01 | 0.0 | 0.02 | 5.70 | 0.00 | 2.420 | 14.13 | 0.00 | 13.2 | 86.6 | 0.2 | -3.90 | 6.17 | 0.81 | 0.75 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 6YW7 | 10960 | 2023-07-03 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 6.70 | 0.01 | 2.034 | 2.17 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 1.01 | 0.0 | 0.02 | 5.70 | 0.00 | 2.420 | 14.13 | 0.00 | 13.2 | 86.6 | 0.2 | -3.90 | 6.17 | 0.81 | 0.75 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 7RZG | 24759 | 2024-02-16 | 2021-08-27 | 4.1 | 3.50 | — | 3.7 | 0.007 | 1.17 | 0.0 | 0.06 | 12.78 | 0.01 | 2.077 | 19.55 | 0.18 | 6.1 | 93.9 | 0.0 | -3.80 | 0.62 | 0.67 | — | 3.4 | 0.004 | 0.79 | 0.0 | 0.05 | 14.06 | 0.00 | 2.130 | 13.67 | 0.00 | 6.7 | 93.3 | 0.0 | -0.94 | 1.28 | 0.63 | 0.70 | — | 15385 | 1888 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZG | 24759 | 2024-01-20 | 2021-08-27 | 4.1 | 3.50 | — | 3.7 | 0.007 | 1.17 | 0.0 | 0.06 | 12.78 | 0.01 | 2.077 | 19.55 | 0.18 | 6.1 | 93.9 | 0.0 | -3.80 | 0.62 | 0.67 | — | 3.4 | 0.004 | 0.79 | 0.0 | 0.05 | 14.06 | 0.00 | 2.130 | 13.67 | 0.00 | 6.7 | 93.3 | 0.0 | -0.94 | 1.28 | 0.63 | 0.70 | — | 15385 | 1888 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6AHU | 9627 | 2023-10-14 | 2018-08-20 | 3.66 | 3.79 | — | 3.7 | 0.003 | 0.77 | 0.0 | 0.04 | 11.49 | 0.01 | 2.284 | 4.88 | 0.09 | 9.8 | 89.9 | 0.2 | -5.26 | 0.74 | 0.67 | 0.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29386 | 2595 | 14 | 413 | 1 | 0 | 0 | logfile |
✘ | 6AHU | 9627 | 2023-11-20 | 2018-08-20 | 3.66 | 3.79 | — | 3.7 | 0.003 | 0.77 | 0.0 | 0.04 | 11.49 | 0.01 | 2.284 | 4.88 | 0.09 | 9.8 | 89.9 | 0.2 | -5.26 | 0.74 | 0.67 | 0.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29386 | 2595 | 14 | 413 | 1 | 0 | 0 | logfile |
✔ | 6YW7 | 10960 | 2023-08-09 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 6.70 | 0.01 | 2.034 | 2.17 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 1.01 | 0.0 | 0.02 | 5.70 | 0.00 | 2.420 | 14.13 | 0.00 | 13.2 | 86.6 | 0.2 | -3.90 | 6.17 | 0.81 | 0.75 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✘ | 7PQ5 | 13587 | 2024-04-06 | 2021-09-16 | 3.17 | 3.58 | 3.09 | 3.4 | 0.005 | 0.85 | 0.0 | 0.05 | 15.55 | 0.01 | 2.255 | 3.50 | 2.82 | 4.5 | 95.3 | 0.2 | -0.13 | 0.85 | 0.87 | 5.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8512 | 1047 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6E1P | 8960 | 2024-04-08 | 2018-07-10 | 3.7 | 3.93 | 3.55 | 3.9 | 0.010 | 1.30 | 1.0 | 0.06 | 14.00 | 0.01 | 1.571 | 10.25 | 0.18 | 6.9 | 92.9 | 0.2 | -5.32 | 0.47 | 0.68 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10697 | 1292 | 6 | 0 | 21 | 2 | 0 | logfile |
✔ | 6YW7 | 10960 | 2023-09-28 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 6.70 | 0.01 | 2.034 | 2.17 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 1.01 | 0.0 | 0.02 | 5.70 | 0.00 | 2.420 | 14.13 | 0.00 | 13.2 | 86.6 | 0.2 | -3.90 | 6.17 | 0.81 | 0.75 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 7RZG | 24759 | 2023-08-14 | 2021-08-27 | 4.1 | 3.50 | — | 3.7 | 0.007 | 1.17 | 0.0 | 0.06 | 12.78 | 0.01 | 2.077 | 19.55 | 0.18 | 6.1 | 93.9 | 0.0 | -3.80 | 0.62 | 0.67 | — | 3.4 | 0.005 | 0.82 | 0.0 | 0.05 | 14.11 | 0.01 | 2.129 | 14.62 | 0.00 | 6.7 | 93.3 | 0.0 | -1.05 | 1.27 | 0.63 | 0.70 | — | 15385 | 1888 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZG | 24759 | 2023-07-07 | 2021-08-27 | 4.1 | 3.50 | — | 3.7 | 0.007 | 1.17 | 0.0 | 0.06 | 12.78 | 0.01 | 2.077 | 19.55 | 0.18 | 6.1 | 93.9 | 0.0 | -3.80 | 0.62 | 0.67 | — | 3.4 | 0.005 | 0.82 | 0.0 | 0.05 | 14.11 | 0.01 | 2.129 | 14.62 | 0.00 | 6.7 | 93.3 | 0.0 | -1.05 | 1.27 | 0.63 | 0.70 | — | 15385 | 1888 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YDQ | 33756 | 2024-01-17 | 2022-07-04 | 4.04 | 4.32 | 4.02 | 4.4 | 0.006 | 0.83 | 0.0 | 0.04 | 17.50 | 0.01 | 2.262 | 10.34 | 0.57 | 3.2 | 96.8 | 0.0 | 1.21 | 0.46 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4778 | 598 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6WCZ | 21618 | 2024-04-07 | 2020-03-31 | 4.0 | 4.24 | — | 4.0 | 0.009 | 1.22 | 0.0 | 0.06 | 12.53 | 0.01 | 2.085 | 14.60 | 2.55 | 12.9 | 87.1 | 0.0 | -4.79 | 0.82 | 0.77 | — | 4.0 | 0.003 | 0.80 | 0.0 | 0.04 | 15.21 | 0.00 | 2.025 | 16.99 | 2.93 | 7.0 | 93.0 | 0.0 | -1.50 | 2.03 | 0.83 | 0.78 | — | 9894 | 1231 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 6WCZ | 21618 | 2024-03-14 | 2020-03-31 | 4.0 | 4.24 | — | 4.0 | 0.009 | 1.22 | 0.0 | 0.06 | 12.53 | 0.01 | 2.085 | 14.60 | 2.55 | 12.9 | 87.1 | 0.0 | -4.79 | 0.82 | 0.77 | — | 4.0 | 0.003 | 0.80 | 0.0 | 0.04 | 15.21 | 0.00 | 2.025 | 16.99 | 2.93 | 7.0 | 93.0 | 0.0 | -1.50 | 2.03 | 0.83 | 0.78 | — | 9894 | 1231 | 2 | 0 | 2 | 0 | 0 | logfile |