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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8HKV | 34861 | 2024-02-23 | 2022-11-28 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 8C95 | 16502 | 2023-08-25 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 14.45 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✘ | 8C95 | 16502 | 2024-04-16 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 23.21 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✔ | 8C95 | 16502 | 2024-03-24 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 23.21 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | 4.8 | 0.005 | 0.76 | 0.0 | 0.04 | 24.56 | 0.01 | 1.894 | 49.43 | 0.00 | 10.6 | 89.4 | 0.0 | -1.86 | 1.96 | 0.85 | 0.86 | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✘ | 8C95 | 16502 | 2023-07-18 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 14.45 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✔ | 8C95 | 16502 | 2023-10-19 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 14.45 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | 4.8 | 0.005 | 0.75 | 0.0 | 0.04 | 17.49 | 0.01 | 1.903 | 47.96 | 0.00 | 10.0 | 90.0 | 0.0 | -2.00 | 1.97 | 0.85 | 0.86 | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✔ | 8C95 | 16502 | 2024-02-23 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 23.21 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | 4.8 | 0.005 | 0.76 | 0.0 | 0.04 | 24.56 | 0.01 | 1.894 | 49.43 | 0.00 | 10.6 | 89.4 | 0.0 | -1.86 | 1.96 | 0.85 | 0.86 | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✘ | 8EP0 | 28494 | 2023-07-11 | 2022-10-04 | 4.9 | 6.49 | 5.04 | 5.3 | 0.004 | 0.79 | 0.0 | 0.05 | 12.19 | 0.01 | 2.237 | 11.79 | 0.00 | 3.6 | 96.4 | 0.0 | 0.06 | 0.70 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24408 | 3372 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EP0 | 28494 | 2024-04-12 | 2022-10-04 | 4.9 | 6.49 | 5.04 | 5.3 | 0.004 | 0.79 | 0.0 | 0.05 | 12.19 | 0.01 | 2.237 | 11.79 | 0.00 | 3.6 | 96.4 | 0.0 | 0.06 | 0.70 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24408 | 3372 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EP0 | 28494 | 2023-08-18 | 2022-10-04 | 4.9 | 6.49 | 5.04 | 5.3 | 0.004 | 0.79 | 0.0 | 0.05 | 12.19 | 0.01 | 2.237 | 11.79 | 0.00 | 3.6 | 96.4 | 0.0 | 0.06 | 0.70 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24408 | 3372 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UPK | 20840 | 2024-04-08 | 2019-10-17 | 4.9 | 7.69 | 6.08 | 7.1 | 0.005 | 0.94 | 0.0 | 0.05 | 20.42 | 0.01 | 1.570 | 20.39 | 0.00 | 7.2 | 92.8 | 0.0 | -3.94 | 0.89 | 0.77 | — | 7.0 | 0.003 | 0.66 | 0.0 | 0.04 | 22.43 | 0.00 | 1.939 | 25.70 | 0.00 | 5.4 | 94.6 | 0.0 | -1.54 | 2.95 | 0.90 | 0.83 | — | 13861 | 1314 | 10 | 144 | 54 | 0 | 0 | logfile |
✔ | 6UPK | 20840 | 2023-08-13 | 2019-10-17 | 4.9 | 7.69 | 6.08 | 7.1 | 0.005 | 0.94 | 0.0 | 0.05 | 20.35 | 0.01 | 1.570 | 20.39 | 0.00 | 7.2 | 92.8 | 0.0 | -3.94 | 0.89 | 0.77 | — | 7.0 | 0.005 | 0.73 | 0.0 | 0.04 | 22.63 | 0.00 | 1.891 | 37.90 | 0.00 | 7.3 | 92.7 | 0.0 | -2.03 | 2.96 | 0.90 | 0.84 | — | 13861 | 1314 | 10 | 144 | 54 | 0 | 0 | logfile |
✘ | 8EP0 | 28494 | 2024-03-19 | 2022-10-04 | 4.9 | 6.49 | 5.04 | 5.3 | 0.004 | 0.79 | 0.0 | 0.05 | 12.19 | 0.01 | 2.237 | 11.79 | 0.00 | 3.6 | 96.4 | 0.0 | 0.06 | 0.70 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24408 | 3372 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EP0 | 28494 | 2023-10-12 | 2022-10-04 | 4.9 | 6.49 | 5.04 | 5.3 | 0.004 | 0.79 | 0.0 | 0.05 | 12.19 | 0.01 | 2.237 | 11.79 | 0.00 | 3.6 | 96.4 | 0.0 | 0.06 | 0.70 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24408 | 3372 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 3iZK | 5247 | 2023-10-04 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.38 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.9 | 0.003 | 0.75 | 0.0 | 0.04 | 13.81 | 0.00 | 2.233 | 21.48 | 0.00 | 2.7 | 97.3 | 0.0 | -0.42 | 1.96 | 0.75 | 0.55 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UPK | 20840 | 2023-07-07 | 2019-10-17 | 4.9 | 7.69 | 6.08 | 7.1 | 0.005 | 0.94 | 0.0 | 0.05 | 20.35 | 0.01 | 1.570 | 20.39 | 0.00 | 7.2 | 92.8 | 0.0 | -3.94 | 0.89 | 0.77 | — | 7.0 | 0.005 | 0.73 | 0.0 | 0.04 | 22.63 | 0.00 | 1.891 | 37.90 | 0.00 | 7.3 | 92.7 | 0.0 | -2.03 | 2.96 | 0.90 | 0.84 | — | 13861 | 1314 | 10 | 144 | 54 | 0 | 0 | logfile |
✔ | 6UPK | 20840 | 2024-02-16 | 2019-10-17 | 4.9 | 7.69 | 6.08 | 7.1 | 0.005 | 0.94 | 0.0 | 0.05 | 20.42 | 0.01 | 1.570 | 20.39 | 0.00 | 7.2 | 92.8 | 0.0 | -3.94 | 0.89 | 0.77 | — | 7.0 | 0.003 | 0.66 | 0.0 | 0.04 | 22.43 | 0.00 | 1.939 | 25.70 | 0.00 | 5.4 | 94.6 | 0.0 | -1.54 | 2.95 | 0.90 | 0.83 | — | 13861 | 1314 | 10 | 144 | 54 | 0 | 0 | logfile |
✔ | 6UPK | 20840 | 2024-03-16 | 2019-10-17 | 4.9 | 7.69 | 6.08 | 7.1 | 0.005 | 0.94 | 0.0 | 0.05 | 20.42 | 0.01 | 1.570 | 20.39 | 0.00 | 7.2 | 92.8 | 0.0 | -3.94 | 0.89 | 0.77 | — | 7.0 | 0.003 | 0.66 | 0.0 | 0.04 | 22.43 | 0.00 | 1.939 | 25.70 | 0.00 | 5.4 | 94.6 | 0.0 | -1.54 | 2.95 | 0.90 | 0.83 | — | 13861 | 1314 | 10 | 144 | 54 | 0 | 0 | logfile |
✔ | 3iZK | 5247 | 2023-09-29 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.38 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.9 | 0.003 | 0.75 | 0.0 | 0.04 | 13.81 | 0.00 | 2.233 | 21.48 | 0.00 | 2.7 | 97.3 | 0.0 | -0.42 | 1.96 | 0.75 | 0.55 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3iZK | 5247 | 2023-11-14 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.38 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.9 | 0.003 | 0.75 | 0.0 | 0.04 | 13.81 | 0.00 | 2.233 | 21.48 | 0.00 | 2.7 | 97.3 | 0.0 | -0.42 | 1.96 | 0.75 | 0.55 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |