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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7D8Z | 30615 | 2024-01-20 | 2020-10-11 | 3.4 | 3.59 | — | 3.5 | 0.009 | 1.15 | 0.0 | 0.06 | 10.33 | 0.01 | 2.209 | 6.36 | 0.53 | 9.2 | 90.7 | 0.1 | -5.56 | 0.64 | 0.78 | 2.38 | 3.5 | 0.003 | 0.75 | 0.0 | 0.04 | 14.67 | 0.00 | 2.166 | 12.62 | 3.07 | 6.6 | 93.4 | 0.0 | -1.38 | 1.31 | 0.64 | 0.79 | 1.68 | 13998 | 1790 | 6 | 0 | 8 | 0 | 0 | logfile |
✔ | 8H8C | 34542 | 2024-04-09 | 2022-10-22 | 3.36 | 3.50 | 3.41 | 3.5 | 0.002 | 0.47 | 0.0 | 0.04 | 13.15 | 0.00 | 2.223 | 7.53 | 1.83 | 9.1 | 90.9 | 0.0 | -4.07 | 0.67 | 0.73 | 2.31 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 16.53 | 0.00 | 2.115 | 9.84 | 3.49 | 13.6 | 86.4 | 0.0 | -3.43 | 0.69 | 0.71 | 0.82 | 2.83 | 16940 | 2078 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8H8C | 34542 | 2023-08-14 | 2022-10-22 | 3.36 | 3.50 | 3.41 | 3.5 | 0.002 | 0.47 | 0.0 | 0.04 | 13.15 | 0.00 | 2.223 | 7.53 | 1.83 | 9.1 | 90.9 | 0.0 | -4.07 | 0.67 | 0.73 | 2.31 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 16.15 | 0.00 | 2.090 | 9.51 | 0.22 | 13.4 | 86.6 | 0.0 | -3.43 | 0.70 | 0.71 | 0.82 | 2.83 | 16940 | 2078 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UVS | 20915 | 2024-02-17 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 9.64 | 0.00 | 1.873 | 2.02 | 0.00 | 11.3 | 88.7 | 0.0 | 0.80 | 0.84 | 0.73 | 0.86 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 8H8C | 34542 | 2023-11-16 | 2022-10-22 | 3.36 | 3.50 | 3.41 | 3.5 | 0.002 | 0.47 | 0.0 | 0.04 | 13.15 | 0.00 | 2.223 | 7.53 | 1.83 | 9.1 | 90.9 | 0.0 | -4.07 | 0.67 | 0.73 | 2.31 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 16.15 | 0.00 | 2.090 | 9.51 | 0.22 | 13.4 | 86.6 | 0.0 | -3.43 | 0.70 | 0.71 | 0.82 | 2.83 | 16940 | 2078 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7URA | 26707 | 2023-12-07 | 2022-04-21 | 3.11 | 3.40 | 3.12 | 3.3 | 0.020 | 1.12 | 0.0 | 0.78 | 26.54 | 0.00 | 2.051 | 11.83 | 0.00 | 4.2 | 95.8 | 0.0 | -2.18 | 0.59 | 0.85 | 3.83 | 3.3 | 0.003 | 1.10 | 0.0 | 0.12 | 20.60 | 0.00 | 2.232 | 5.73 | 0.00 | 3.2 | 96.8 | 0.0 | 1.02 | 0.41 | 0.57 | 0.86 | 2.57 | 5400 | 658 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8H8C | 34542 | 2024-03-17 | 2022-10-22 | 3.36 | 3.50 | 3.41 | 3.5 | 0.002 | 0.47 | 0.0 | 0.04 | 13.15 | 0.00 | 2.223 | 7.53 | 1.83 | 9.1 | 90.9 | 0.0 | -4.07 | 0.67 | 0.73 | 2.31 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 16.53 | 0.00 | 2.115 | 9.84 | 3.49 | 13.6 | 86.4 | 0.0 | -3.43 | 0.69 | 0.71 | 0.82 | 2.83 | 16940 | 2078 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8H8C | 34542 | 2023-07-08 | 2022-10-22 | 3.36 | 3.50 | 3.41 | 3.5 | 0.002 | 0.47 | 0.0 | 0.04 | 13.15 | 0.00 | 2.223 | 7.53 | 1.83 | 9.1 | 90.9 | 0.0 | -4.07 | 0.67 | 0.73 | 2.31 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 16.15 | 0.00 | 2.090 | 9.51 | 0.22 | 13.4 | 86.6 | 0.0 | -3.43 | 0.70 | 0.71 | 0.82 | 2.83 | 16940 | 2078 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8H8C | 34542 | 2023-10-08 | 2022-10-22 | 3.36 | 3.50 | 3.41 | 3.5 | 0.002 | 0.47 | 0.0 | 0.04 | 13.15 | 0.00 | 2.223 | 7.53 | 1.83 | 9.1 | 90.9 | 0.0 | -4.07 | 0.67 | 0.73 | 2.31 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 16.15 | 0.00 | 2.090 | 9.51 | 0.22 | 13.4 | 86.6 | 0.0 | -3.43 | 0.70 | 0.71 | 0.82 | 2.83 | 16940 | 2078 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UVS | 20915 | 2023-12-11 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.002 | 0.63 | 0.0 | 0.04 | 9.28 | 0.00 | 1.893 | 1.21 | 0.00 | 8.8 | 91.2 | 0.0 | 1.85 | 0.85 | 0.72 | 0.85 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 6UVS | 20915 | 2023-07-08 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.002 | 0.62 | 0.0 | 0.04 | 9.23 | 0.01 | 1.899 | 1.10 | 0.00 | 7.2 | 92.8 | 0.0 | 2.03 | 0.86 | 0.73 | 0.85 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 6UVS | 20915 | 2024-03-17 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 9.64 | 0.00 | 1.873 | 2.02 | 0.00 | 11.3 | 88.7 | 0.0 | 0.80 | 0.84 | 0.73 | 0.86 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 6UVS | 20915 | 2023-08-14 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.002 | 0.62 | 0.0 | 0.04 | 9.23 | 0.01 | 1.899 | 1.10 | 0.00 | 7.2 | 92.8 | 0.0 | 2.03 | 0.86 | 0.73 | 0.85 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 8H8C | 34542 | 2023-12-11 | 2022-10-22 | 3.36 | 3.50 | 3.41 | 3.5 | 0.002 | 0.47 | 0.0 | 0.04 | 13.15 | 0.00 | 2.223 | 7.53 | 1.83 | 9.1 | 90.9 | 0.0 | -4.07 | 0.67 | 0.73 | 2.31 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 16.15 | 0.00 | 2.090 | 9.51 | 0.22 | 13.4 | 86.6 | 0.0 | -3.43 | 0.70 | 0.71 | 0.82 | 2.83 | 16940 | 2078 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UVS | 20915 | 2023-10-08 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.002 | 0.62 | 0.0 | 0.04 | 9.23 | 0.01 | 1.899 | 1.10 | 0.00 | 7.2 | 92.8 | 0.0 | 2.03 | 0.86 | 0.73 | 0.85 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 6UVS | 20915 | 2024-04-09 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 9.64 | 0.00 | 1.873 | 2.02 | 0.00 | 11.3 | 88.7 | 0.0 | 0.80 | 0.84 | 0.73 | 0.86 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 6UVS | 20915 | 2023-11-16 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.002 | 0.62 | 0.0 | 0.04 | 9.23 | 0.01 | 1.899 | 1.10 | 0.00 | 7.2 | 92.8 | 0.0 | 2.03 | 0.86 | 0.73 | 0.85 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 8H8C | 34542 | 2024-02-17 | 2022-10-22 | 3.36 | 3.50 | 3.41 | 3.5 | 0.002 | 0.47 | 0.0 | 0.04 | 13.15 | 0.00 | 2.223 | 7.53 | 1.83 | 9.1 | 90.9 | 0.0 | -4.07 | 0.67 | 0.73 | 2.31 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 16.53 | 0.00 | 2.115 | 9.84 | 3.49 | 13.6 | 86.4 | 0.0 | -3.43 | 0.69 | 0.71 | 0.82 | 2.83 | 16940 | 2078 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D8Z | 30615 | 2024-03-16 | 2020-10-11 | 3.4 | 3.59 | — | 3.5 | 0.009 | 1.15 | 0.0 | 0.06 | 10.33 | 0.01 | 2.209 | 6.36 | 0.53 | 9.2 | 90.7 | 0.1 | -5.56 | 0.64 | 0.78 | 2.38 | 3.5 | 0.003 | 0.75 | 0.0 | 0.04 | 14.67 | 0.00 | 2.166 | 12.62 | 3.07 | 6.6 | 93.4 | 0.0 | -1.38 | 1.31 | 0.64 | 0.79 | 1.68 | 13998 | 1790 | 6 | 0 | 8 | 0 | 0 | logfile |
✔ | 7D8Z | 30615 | 2024-02-16 | 2020-10-11 | 3.4 | 3.59 | — | 3.5 | 0.009 | 1.15 | 0.0 | 0.06 | 10.33 | 0.01 | 2.209 | 6.36 | 0.53 | 9.2 | 90.7 | 0.1 | -5.56 | 0.64 | 0.78 | 2.38 | 3.5 | 0.003 | 0.75 | 0.0 | 0.04 | 14.67 | 0.00 | 2.166 | 12.62 | 3.07 | 6.6 | 93.4 | 0.0 | -1.38 | 1.31 | 0.64 | 0.79 | 1.68 | 13998 | 1790 | 6 | 0 | 8 | 0 | 0 | logfile |