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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GYL | 0091 | 2023-08-25 | 2018-06-30 | 4.8 | 4.06 | 4.25 | 12.0 | 0.008 | 0.47 | 0.0 | 0.04 | 11.68 | 0.00 | 0.860 | 9.27 | 0.16 | 6.2 | 92.8 | 1.0 | -3.33 | 0.32 | 0.00 | — | 3.4 | 0.003 | 0.78 | 0.0 | 0.04 | 14.55 | 0.01 | 2.062 | 20.07 | 0.00 | 6.0 | 93.7 | 0.2 | -1.26 | 1.24 | 0.50 | 0.18 | — | 43409 | 5250 | 30 | 112 | 11 | 0 | 0 | logfile |
✔ | 6GYL | 0091 | 2024-03-24 | 2018-06-30 | 4.8 | 4.06 | 4.25 | 12.0 | 0.008 | 0.47 | 0.0 | 0.04 | 11.78 | 0.00 | 0.860 | 9.27 | 0.16 | 6.2 | 92.8 | 1.0 | -3.33 | 0.32 | 0.00 | — | 3.5 | 0.003 | 0.80 | 0.0 | 0.05 | 14.75 | 0.01 | 2.093 | 18.95 | 0.00 | 5.4 | 94.4 | 0.3 | -1.55 | 1.31 | 0.51 | 0.19 | — | 43409 | 5250 | 30 | 112 | 11 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2023-07-08 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 10.01 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 12.92 | 0.01 | 2.069 | 15.85 | 0.36 | 4.4 | 95.5 | 0.2 | -1.00 | 1.62 | 0.32 | 0.20 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✘ | 6MiX | 9132 | 2024-04-17 | 2018-09-20 | 3.6 | 4.57 | — | 14.0 | 0.007 | 1.19 | 0.0 | 0.07 | 16.40 | 0.01 | 2.212 | 9.79 | 2.30 | 14.6 | 85.0 | 0.4 | -5.69 | -0.03 | 0.00 | 0.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43120 | 5348 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8iEN | 35387 | 2024-04-06 | 2023-02-15 | 3.25 | 3.66 | 3.30 | 7.2 | 0.004 | 1.21 | 0.0 | 0.04 | 14.04 | 0.00 | 2.168 | 8.43 | 0.24 | 5.0 | 94.9 | 0.1 | -2.18 | 0.18 | 0.00 | -0.05 | 3.5 | 0.003 | 1.04 | 0.0 | 0.04 | 16.13 | 0.01 | 2.094 | 16.86 | 1.18 | 8.4 | 91.6 | 0.0 | -1.45 | 1.69 | 0.35 | 0.28 | 0.69 | 7678 | 991 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 8iEN | 35387 | 2024-03-11 | 2023-02-15 | 3.25 | 3.66 | 3.30 | 7.2 | 0.004 | 1.21 | 0.0 | 0.04 | 14.04 | 0.00 | 2.168 | 8.43 | 0.24 | 5.0 | 94.9 | 0.1 | -2.18 | 0.18 | 0.00 | -0.05 | 3.5 | 0.003 | 1.04 | 0.0 | 0.04 | 16.13 | 0.01 | 2.094 | 16.86 | 1.18 | 8.4 | 91.6 | 0.0 | -1.45 | 1.69 | 0.35 | 0.28 | 0.69 | 7678 | 991 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2023-12-10 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 14.73 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 12.57 | 0.00 | 2.069 | 13.32 | 0.21 | 3.1 | 96.7 | 0.2 | -0.72 | 1.54 | 0.30 | 0.17 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 8iEN | 35387 | 2024-01-18 | 2023-02-15 | 3.25 | 3.66 | 3.30 | 7.2 | 0.004 | 1.21 | 0.0 | 0.04 | 14.04 | 0.00 | 2.168 | 8.43 | 0.24 | 5.0 | 94.9 | 0.1 | -2.18 | 0.18 | 0.00 | -0.05 | 3.5 | 0.003 | 1.04 | 0.0 | 0.04 | 16.13 | 0.01 | 2.094 | 16.86 | 1.18 | 8.4 | 91.6 | 0.0 | -1.45 | 1.69 | 0.35 | 0.28 | 0.69 | 7678 | 991 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 8iEN | 35387 | 2024-02-13 | 2023-02-15 | 3.25 | 3.66 | 3.30 | 7.2 | 0.004 | 1.21 | 0.0 | 0.04 | 14.04 | 0.00 | 2.168 | 8.43 | 0.24 | 5.0 | 94.9 | 0.1 | -2.18 | 0.18 | 0.00 | -0.05 | 3.5 | 0.003 | 1.04 | 0.0 | 0.04 | 16.13 | 0.01 | 2.094 | 16.86 | 1.18 | 8.4 | 91.6 | 0.0 | -1.45 | 1.69 | 0.35 | 0.28 | 0.69 | 7678 | 991 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2023-10-08 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 10.01 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 12.92 | 0.01 | 2.069 | 15.85 | 0.36 | 4.4 | 95.5 | 0.2 | -1.00 | 1.62 | 0.32 | 0.20 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 8J5Y | 33733 | 2024-02-15 | 2023-04-24 | 3.07 | 3.50 | 3.24 | 20.0 | 0.004 | 0.84 | 0.0 | 0.05 | 13.88 | 0.01 | 2.153 | 12.97 | 0.00 | 6.0 | 93.7 | 0.3 | -1.55 | 0.08 | 0.00 | 0.39 | 3.4 | 0.003 | 0.74 | 0.0 | 0.04 | 15.95 | 0.00 | 2.112 | 15.74 | 2.42 | 7.6 | 92.3 | 0.1 | -1.26 | 1.56 | 0.12 | 0.06 | 0.26 | 10905 | 1389 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8J5Y | 33733 | 2024-03-15 | 2023-04-24 | 3.07 | 3.50 | 3.24 | 20.0 | 0.004 | 0.84 | 0.0 | 0.05 | 13.88 | 0.01 | 2.153 | 12.97 | 0.00 | 6.0 | 93.7 | 0.3 | -1.55 | 0.08 | 0.00 | 0.39 | 3.4 | 0.003 | 0.74 | 0.0 | 0.04 | 15.95 | 0.00 | 2.112 | 15.74 | 2.42 | 7.6 | 92.3 | 0.1 | -1.26 | 1.56 | 0.12 | 0.06 | 0.26 | 10905 | 1389 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2023-08-14 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 10.01 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 12.92 | 0.01 | 2.069 | 15.85 | 0.36 | 4.4 | 95.5 | 0.2 | -1.00 | 1.62 | 0.32 | 0.20 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2023-11-16 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 10.01 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 12.92 | 0.01 | 2.069 | 15.85 | 0.36 | 4.4 | 95.5 | 0.2 | -1.00 | 1.62 | 0.32 | 0.20 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 6GYL | 0091 | 2023-10-20 | 2018-06-30 | 4.8 | 4.06 | 4.25 | 12.0 | 0.008 | 0.47 | 0.0 | 0.04 | 11.68 | 0.00 | 0.860 | 9.27 | 0.16 | 6.2 | 92.8 | 1.0 | -3.33 | 0.32 | 0.00 | — | 3.6 | 0.004 | 0.82 | 0.0 | 0.05 | 14.52 | 0.01 | 2.053 | 21.33 | 0.00 | 7.4 | 92.3 | 0.3 | -1.48 | 1.28 | 0.51 | 0.19 | — | 43409 | 5250 | 30 | 112 | 11 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2024-02-16 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 14.73 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.8 | 0.005 | 0.94 | 1.0 | 0.05 | 13.34 | 0.01 | 2.007 | 21.22 | 1.97 | 6.6 | 93.2 | 0.2 | -1.51 | 1.68 | 0.34 | 0.23 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2024-01-20 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 14.73 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.8 | 0.005 | 0.94 | 1.0 | 0.05 | 13.34 | 0.01 | 2.007 | 21.22 | 1.97 | 6.6 | 93.2 | 0.2 | -1.51 | 1.68 | 0.34 | 0.23 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2024-03-14 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 14.73 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.8 | 0.005 | 0.94 | 1.0 | 0.05 | 13.34 | 0.01 | 2.007 | 21.22 | 1.97 | 6.6 | 93.2 | 0.2 | -1.51 | 1.68 | 0.34 | 0.23 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 7XMX | 33307 | 2024-02-20 | 2022-04-27 | 3.62 | 3.63 | 3.44 | 22.0 | 0.012 | 1.30 | 7.0 | 0.09 | 12.65 | 0.01 | 1.407 | 4.82 | 1.34 | 6.6 | 93.3 | 0.1 | -0.95 | 0.29 | 0.01 | 0.23 | 21.0 | 0.003 | 0.66 | 0.0 | 0.04 | 14.30 | 0.00 | 2.124 | 10.62 | 2.07 | 5.6 | 94.3 | 0.1 | -0.83 | 1.07 | 0.32 | 0.14 | 0.16 | 28727 | 3700 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 7XMX | 33307 | 2024-03-21 | 2022-04-27 | 3.62 | 3.63 | 3.44 | 22.0 | 0.012 | 1.30 | 7.0 | 0.09 | 12.65 | 0.01 | 1.407 | 4.82 | 1.34 | 6.6 | 93.3 | 0.1 | -0.95 | 0.29 | 0.01 | 0.23 | 21.0 | 0.003 | 0.66 | 0.0 | 0.04 | 14.30 | 0.00 | 2.124 | 10.62 | 2.07 | 5.6 | 94.3 | 0.1 | -0.83 | 1.07 | 0.32 | 0.14 | 0.16 | 28727 | 3700 | 12 | 0 | 24 | 0 | 0 | logfile |