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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8C8P | 16490 | 2023-07-03 | 2023-01-20 | 4.1 | 5.09 | 4.13 | 5.5 | 0.002 | 0.67 | 0.0 | 0.05 | 13.50 | 0.00 | 2.267 | 6.06 | 0.00 | 2.6 | 97.4 | 0.0 | -2.08 | 0.66 | 0.67 | — | 5.0 | 0.003 | 0.74 | 0.0 | 0.04 | 13.37 | 0.00 | 2.169 | 18.39 | 0.00 | 4.8 | 95.2 | 0.0 | -1.28 | 1.17 | 0.68 | 0.71 | — | 2449 | 314 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z3T | 11064 | 2023-07-03 | 2020-05-21 | 2.69 | 3.99 | 3.36 | 3.9 | 0.010 | 1.90 | 1.0 | 0.07 | 17.55 | 0.01 | 2.284 | 6.72 | 1.60 | 9.6 | 90.2 | 0.2 | -5.84 | 0.21 | 0.59 | 1.55 | 3.9 | 0.005 | 1.17 | 0.0 | 0.04 | 18.69 | 0.01 | 2.149 | 16.73 | 2.14 | 8.6 | 91.4 | 0.0 | -2.15 | 0.93 | 0.21 | 0.66 | 0.77 | 3608 | 441 | 4 | 0 | 21 | 0 | 0 | logfile |
✔ | 7Yi9 | 33854 | 2023-07-03 | 2022-07-15 | 2.6 | 2.91 | 2.69 | 2.9 | 0.004 | 0.65 | 0.0 | 0.40 | 14.29 | 0.00 | 2.115 | 9.72 | 0.00 | 5.0 | 95.0 | 0.0 | -0.81 | 0.63 | 0.75 | 3.34 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 17.36 | 0.00 | 2.126 | 10.96 | 1.73 | 4.2 | 95.8 | 0.0 | -0.57 | 1.28 | 0.65 | 0.78 | 3.39 | 5226 | 634 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7RYQ | 24745 | 2023-07-03 | 2021-08-25 | 4.6 | 6.00 | 4.65 | 4.8 | 0.005 | 1.08 | 0.0 | 0.06 | 15.48 | 0.01 | 1.251 | 39.25 | 6.25 | 10.7 | 88.9 | 0.4 | -1.51 | 0.85 | 0.76 | — | 4.8 | 0.003 | 0.76 | 0.0 | 0.04 | 14.17 | 0.01 | 2.162 | 16.62 | 0.00 | 7.6 | 92.4 | 0.0 | -0.37 | 1.23 | 0.85 | 0.77 | — | 4332 | 527 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AW3 | 15690 | 2023-07-03 | 2022-08-29 | 3.6 | 4.37 | 3.68 | 3.7 | 0.008 | 1.10 | 3.0 | 0.08 | 15.19 | 0.01 | 1.874 | 11.98 | 2.12 | 5.9 | 94.1 | 0.0 | -1.95 | 0.79 | 0.65 | 2.69 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 16.09 | 0.00 | 1.916 | 14.55 | 0.00 | 4.3 | 95.7 | 0.0 | -1.06 | 0.86 | 0.86 | 0.81 | 1.51 | 5059 | 456 | 5 | 73 | 2 | 0 | 0 | logfile |
✔ | 8EPA | 28523 | 2023-07-03 | 2022-10-05 | 3.4 | 4.08 | 3.33 | 3.8 | 0.004 | 0.69 | 0.0 | 0.05 | 14.00 | 0.00 | 2.184 | 14.18 | 0.18 | 9.3 | 90.4 | 0.3 | -2.16 | 0.75 | 0.75 | 1.53 | 3.8 | 0.003 | 0.77 | 0.0 | 0.05 | 15.85 | 0.00 | 2.183 | 16.51 | 0.18 | 8.8 | 90.9 | 0.3 | -2.03 | 0.37 | 0.76 | 0.76 | 0.92 | 5045 | 637 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7SWP | 25478 | 2023-07-03 | 2021-11-20 | 3.8 | 3.74 | — | 4.0 | 0.008 | 0.92 | 0.0 | 0.05 | 12.87 | 0.01 | 2.202 | 40.14 | 0.00 | 12.1 | 87.9 | 0.0 | -2.17 | 0.51 | 0.71 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3372 | 436 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YPQ | 34011 | 2023-07-03 | 2022-08-04 | 3.1 | 3.22 | 2.15 | 3.2 | 0.005 | 0.63 | 0.0 | 0.05 | 17.29 | 0.00 | 2.261 | 7.93 | 0.00 | 2.2 | 97.8 | 0.0 | -0.66 | 0.52 | 0.79 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2915 | 327 | 2 | 11 | 0 | 0 | 0 | logfile |
✔ | 7QBC | 13886 | 2023-07-03 | 2021-11-18 | 3.53 | 3.78 | 3.55 | 3.8 | 0.008 | 0.97 | 0.0 | 0.05 | 14.35 | 0.01 | 2.055 | 3.75 | 0.43 | 4.9 | 95.1 | 0.0 | -2.40 | 0.56 | 0.74 | 2.58 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 16.07 | 0.00 | 2.121 | 12.72 | 0.64 | 5.0 | 95.0 | 0.0 | 1.45 | 1.25 | 0.60 | 0.78 | 0.97 | 5054 | 622 | 6 | 0 | 16 | 0 | 0 | logfile |
✔ | 7QBi | 13887 | 2023-07-03 | 2021-11-19 | 3.46 | 3.72 | 3.49 | 3.7 | 0.008 | 1.06 | 0.0 | 0.05 | 14.72 | 0.01 | 2.231 | 3.40 | 0.00 | 2.8 | 97.2 | 0.0 | -1.45 | 0.59 | 0.76 | 2.29 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 16.15 | 0.00 | 2.217 | 12.49 | 0.44 | 2.1 | 97.9 | 0.0 | 3.07 | 1.21 | 0.60 | 0.81 | 2.24 | 4996 | 622 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 7Z13 | 14439 | 2023-07-03 | 2022-02-24 | 3.4 | 3.29 | — | 3.3 | 0.003 | 0.66 | 2.0 | 0.04 | 15.72 | 0.00 | 1.997 | 7.26 | 0.13 | 3.8 | 96.1 | 0.0 | -0.12 | 0.66 | 0.78 | 2.01 | 3.3 | 0.004 | 0.65 | 0.0 | 0.04 | 17.60 | 0.00 | 1.967 | 7.76 | 0.33 | 4.4 | 95.6 | 0.0 | -0.08 | 0.48 | 0.64 | 0.81 | 1.81 | 107381 | 13128 | 42 | 106 | 32 | 0 | 0 | logfile |
✔ | 7WoG | 32651 | 2023-07-03 | 2022-01-21 | 4.06 | 2.95 | — | 2.0 | 0.001 | 0.41 | 0.0 | 0.04 | 8.09 | 0.00 | 2.293 | 10.22 | 3.78 | 8.0 | 92.0 | 0.0 | -3.98 | 0.51 | 0.51 | — | 2.2 | 0.003 | 0.71 | 0.0 | 0.04 | 10.94 | 0.00 | 2.020 | 21.35 | 0.00 | 13.1 | 86.9 | 0.0 | -2.59 | 1.02 | 0.54 | 0.55 | — | 3362 | 433 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N98 | 24252 | 2023-07-03 | 2021-06-17 | 3.5 | 3.78 | 3.89 | 4.0 | 0.004 | 0.72 | 0.0 | 0.05 | 13.69 | 0.01 | 2.217 | 11.62 | 0.27 | 8.5 | 91.5 | 0.0 | -1.56 | 0.51 | 0.82 | 3.02 | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 16.81 | 0.01 | 2.245 | 8.30 | 1.07 | 7.6 | 92.4 | 0.0 | 0.09 | 0.51 | 0.50 | 0.81 | 1.11 | 3625 | 473 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T2E | 25611 | 2023-07-03 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 16.21 | 0.00 | 2.222 | 2.35 | 1.18 | 0.3 | 99.7 | 0.0 | 0.45 | 0.13 | 0.36 | 0.86 | 4.79 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HS2 | 34983 | 2023-07-03 | 2022-12-16 | 3.08 | 3.85 | 3.16 | 3.6 | 0.004 | 0.78 | 0.0 | 0.05 | 14.96 | 0.01 | 2.192 | 7.16 | 0.17 | 4.7 | 95.3 | 0.0 | 0.10 | 0.67 | 0.87 | 3.05 | 3.6 | 0.004 | 0.65 | 0.0 | 0.04 | 15.30 | 0.00 | 2.204 | 12.20 | 0.17 | 5.5 | 94.5 | 0.0 | 0.78 | 0.90 | 0.68 | 0.88 | 2.58 | 5456 | 716 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W3T | 32293 | 2023-07-03 | 2021-11-26 | 3.59 | 2.49 | 3.54 | 2.2 | 0.004 | 0.73 | 0.0 | 0.05 | 14.39 | 0.01 | 2.259 | 8.96 | 0.00 | 4.6 | 95.4 | 0.0 | -2.83 | 0.76 | 0.75 | 4.00 | 2.2 | 0.003 | 0.64 | 0.0 | 0.05 | 16.79 | 0.00 | 2.191 | 11.71 | 0.62 | 4.6 | 95.4 | 0.0 | -2.89 | 0.34 | 0.77 | 0.75 | 3.46 | 1455 | 176 | 3 | 0 | 7 | 0 | 0 | logfile |
✔ | 7URA | 26707 | 2023-07-03 | 2022-04-21 | 3.11 | 3.40 | 3.12 | 3.3 | 0.020 | 1.12 | 0.0 | 0.78 | 16.47 | 0.00 | 2.051 | 11.83 | 0.00 | 4.2 | 95.8 | 0.0 | -2.18 | 0.59 | 0.85 | 3.83 | 3.3 | 0.002 | 1.08 | 0.0 | 0.12 | 16.33 | 0.00 | 2.219 | 5.44 | 0.36 | 3.4 | 96.6 | 0.0 | 1.10 | 0.41 | 0.57 | 0.85 | 2.59 | 5400 | 658 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7Yi8 | 33853 | 2023-07-03 | 2022-07-15 | 2.7 | 2.97 | 2.76 | 2.9 | 0.003 | 0.61 | 0.0 | 0.04 | 14.73 | 0.00 | 2.179 | 9.92 | 0.00 | 4.0 | 96.0 | 0.0 | -0.52 | 0.69 | 0.74 | 2.24 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 17.66 | 0.00 | 2.194 | 11.35 | 2.43 | 4.2 | 95.8 | 0.0 | -0.94 | 0.95 | 0.69 | 0.78 | 2.01 | 5225 | 635 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B01 | 15775 | 2023-07-03 | 2022-09-06 | 3.03 | 3.65 | 3.02 | 3.5 | 0.004 | 0.60 | 0.0 | 0.04 | 13.05 | 0.00 | 2.217 | 2.82 | 0.53 | 2.9 | 97.1 | 0.0 | 2.16 | 0.67 | 0.82 | 2.94 | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 14.65 | 0.00 | 2.223 | 3.70 | 0.35 | 1.8 | 98.2 | 0.0 | 1.95 | 0.44 | 0.71 | 0.86 | 2.82 | 5478 | 684 | 5 | 0 | 15 | 0 | 0 | logfile |
✔ | 7SQS | 25392 | 2023-07-03 | 2021-11-06 | 3.1 | 3.86 | 2.91 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 13.61 | 0.00 | 2.317 | 3.59 | 0.22 | 2.9 | 97.1 | 0.0 | 1.01 | 0.76 | 0.84 | 2.45 | 3.6 | 0.004 | 0.57 | 0.0 | 0.04 | 14.95 | 0.00 | 2.243 | 4.28 | 0.00 | 4.6 | 95.4 | 0.0 | 0.93 | 0.32 | 0.77 | 0.86 | 2.75 | 4376 | 560 | 5 | 0 | 0 | 0 | 0 | logfile |