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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6XJB | 22205 | 2023-07-05 | 2020-06-23 | 3.8 | 4.06 | — | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 13.11 | 0.00 | 2.165 | 9.70 | 0.00 | 8.6 | 91.4 | 0.0 | -3.06 | 0.88 | 0.82 | 1.76 | 3.9 | 0.004 | 0.64 | 0.0 | 0.04 | 15.19 | 0.00 | 2.043 | 13.87 | 0.19 | 7.8 | 92.2 | 0.0 | -1.33 | 1.82 | 0.88 | 0.85 | 2.02 | 10070 | 1277 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Si7 | 25139 | 2024-04-07 | 2021-10-12 | 3.49 | 3.47 | — | 3.4 | 0.003 | 1.32 | 0.0 | 0.04 | 13.13 | 0.00 | 1.963 | 5.23 | 0.00 | 2.6 | 97.4 | 0.0 | 2.38 | 0.49 | 0.78 | 0.67 | 3.4 | 0.003 | 0.92 | 0.0 | 0.04 | 15.07 | 0.00 | 1.949 | 5.67 | 0.83 | 2.9 | 97.1 | 0.0 | 2.02 | 1.00 | 0.51 | 0.83 | 1.06 | 11287 | 728 | 1 | 0 | 2 | 0 | 5777 | logfile |
✔ | 7Si6 | 25138 | 2023-11-15 | 2021-10-12 | 3.32 | 3.28 | — | 3.3 | 0.003 | 1.22 | 0.0 | 0.04 | 13.58 | 0.00 | 2.044 | 4.51 | 0.00 | 1.4 | 98.6 | 0.0 | 2.88 | 0.46 | 0.77 | 1.67 | 3.3 | 0.003 | 0.85 | 0.0 | 0.04 | 14.76 | 0.00 | 1.919 | 4.22 | 0.41 | 1.7 | 98.3 | 0.0 | 2.52 | 0.39 | 0.52 | 0.82 | 1.82 | 13515 | 873 | 1 | 0 | 2 | 0 | 6910 | logfile |
✔ | 7Si7 | 25139 | 2023-07-06 | 2021-10-12 | 3.49 | 3.47 | — | 3.4 | 0.003 | 1.32 | 0.0 | 0.04 | 13.13 | 0.00 | 1.963 | 5.23 | 0.00 | 2.6 | 97.4 | 0.0 | 2.38 | 0.49 | 0.78 | 0.67 | 3.4 | 0.002 | 0.92 | 0.0 | 0.04 | 15.00 | 0.00 | 1.950 | 5.49 | 0.17 | 3.1 | 96.9 | 0.0 | 2.10 | 0.51 | 0.51 | 0.83 | 0.96 | 11287 | 728 | 1 | 0 | 2 | 0 | 5777 | logfile |
✔ | 7Si6 | 25138 | 2023-10-06 | 2021-10-12 | 3.32 | 3.28 | — | 3.3 | 0.003 | 1.22 | 0.0 | 0.04 | 13.58 | 0.00 | 2.044 | 4.51 | 0.00 | 1.4 | 98.6 | 0.0 | 2.88 | 0.46 | 0.77 | 1.67 | 3.3 | 0.003 | 0.85 | 0.0 | 0.04 | 14.76 | 0.00 | 1.919 | 4.22 | 0.41 | 1.7 | 98.3 | 0.0 | 2.52 | 0.39 | 0.52 | 0.82 | 1.82 | 13515 | 873 | 1 | 0 | 2 | 0 | 6910 | logfile |
✔ | 7KPW | 22990 | 2023-08-09 | 2020-11-12 | 4.9 | 5.04 | 4.74 | 4.9 | 0.009 | 1.54 | 4.0 | 0.10 | 1.89 | 0.01 | 2.279 | 3.61 | 0.00 | 3.9 | 94.9 | 1.2 | 4.09 | 0.75 | 0.67 | — | 4.9 | 0.003 | 0.73 | 0.0 | 0.04 | 5.85 | 0.00 | 2.148 | 2.79 | 0.00 | 11.5 | 87.9 | 0.6 | -0.50 | 2.04 | 0.82 | 0.82 | — | 4313 | 865 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Si7 | 25139 | 2024-03-15 | 2021-10-12 | 3.49 | 3.47 | — | 3.4 | 0.003 | 1.32 | 0.0 | 0.04 | 13.13 | 0.00 | 1.963 | 5.23 | 0.00 | 2.6 | 97.4 | 0.0 | 2.38 | 0.49 | 0.78 | 0.67 | 3.4 | 0.003 | 0.92 | 0.0 | 0.04 | 15.07 | 0.00 | 1.949 | 5.67 | 0.83 | 2.9 | 97.1 | 0.0 | 2.02 | 1.00 | 0.51 | 0.83 | 1.06 | 11287 | 728 | 1 | 0 | 2 | 0 | 5777 | logfile |
✔ | 7Si7 | 25139 | 2023-10-05 | 2021-10-12 | 3.49 | 3.47 | — | 3.4 | 0.003 | 1.32 | 0.0 | 0.04 | 13.13 | 0.00 | 1.963 | 5.23 | 0.00 | 2.6 | 97.4 | 0.0 | 2.38 | 0.49 | 0.78 | 0.67 | 3.4 | 0.002 | 0.92 | 0.0 | 0.04 | 15.00 | 0.00 | 1.950 | 5.49 | 0.17 | 3.1 | 96.9 | 0.0 | 2.10 | 0.51 | 0.51 | 0.83 | 0.96 | 11287 | 728 | 1 | 0 | 2 | 0 | 5777 | logfile |
✔ | 6XJB | 22205 | 2024-01-19 | 2020-06-23 | 3.8 | 4.06 | — | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 13.11 | 0.00 | 2.165 | 9.70 | 0.00 | 8.6 | 91.4 | 0.0 | -3.06 | 0.88 | 0.82 | 1.76 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 15.36 | 0.00 | 2.083 | 12.82 | 4.27 | 7.5 | 92.5 | 0.0 | -1.34 | 1.82 | 0.88 | 0.85 | 1.85 | 10070 | 1277 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Si7 | 25139 | 2023-12-09 | 2021-10-12 | 3.49 | 3.47 | — | 3.4 | 0.003 | 1.32 | 0.0 | 0.04 | 13.13 | 0.00 | 1.963 | 5.23 | 0.00 | 2.6 | 97.4 | 0.0 | 2.38 | 0.49 | 0.78 | 0.67 | 3.4 | 0.003 | 0.93 | 0.0 | 0.04 | 14.94 | 0.00 | 1.941 | 6.20 | 0.17 | 2.8 | 97.2 | 0.0 | 1.87 | 1.00 | 0.52 | 0.83 | 1.09 | 11287 | 728 | 1 | 0 | 2 | 0 | 5777 | logfile |
✔ | 7Si7 | 25139 | 2023-09-30 | 2021-10-12 | 3.49 | 3.47 | — | 3.4 | 0.003 | 1.32 | 0.0 | 0.04 | 13.13 | 0.00 | 1.963 | 5.23 | 0.00 | 2.6 | 97.4 | 0.0 | 2.38 | 0.49 | 0.78 | 0.67 | 3.4 | 0.002 | 0.92 | 0.0 | 0.04 | 15.00 | 0.00 | 1.950 | 5.49 | 0.17 | 3.1 | 96.9 | 0.0 | 2.10 | 0.51 | 0.51 | 0.83 | 0.96 | 11287 | 728 | 1 | 0 | 2 | 0 | 5777 | logfile |
✔ | 7PD4 | 13330 | 2024-02-13 | 2021-08-04 | 4.9 | 4.13 | — | 7.8 | 0.005 | 0.87 | 0.0 | 0.05 | 14.59 | 0.00 | 2.035 | 38.59 | 0.00 | 11.7 | 88.3 | 0.0 | -4.80 | 0.73 | 0.72 | — | 7.8 | 0.005 | 0.84 | 0.0 | 0.05 | 13.74 | 0.00 | 2.064 | 24.98 | 0.00 | 6.5 | 93.5 | 0.0 | -0.78 | 1.47 | 0.73 | 0.74 | — | 6676 | 842 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Si7 | 25139 | 2023-08-12 | 2021-10-12 | 3.49 | 3.47 | — | 3.4 | 0.003 | 1.32 | 0.0 | 0.04 | 13.13 | 0.00 | 1.963 | 5.23 | 0.00 | 2.6 | 97.4 | 0.0 | 2.38 | 0.49 | 0.78 | 0.67 | 3.4 | 0.002 | 0.92 | 0.0 | 0.04 | 15.00 | 0.00 | 1.950 | 5.49 | 0.17 | 3.1 | 96.9 | 0.0 | 2.10 | 0.51 | 0.51 | 0.83 | 0.96 | 11287 | 728 | 1 | 0 | 2 | 0 | 5777 | logfile |
✔ | 7PD4 | 13330 | 2023-10-03 | 2021-08-04 | 4.9 | 4.13 | — | 7.8 | 0.005 | 0.87 | 0.0 | 0.05 | 14.59 | 0.00 | 2.035 | 38.59 | 0.00 | 11.7 | 88.3 | 0.0 | -4.80 | 0.73 | 0.72 | — | 7.8 | 0.003 | 0.78 | 0.0 | 0.04 | 13.56 | 0.00 | 2.126 | 18.85 | 0.00 | 5.8 | 94.2 | 0.0 | -0.39 | 1.28 | 0.73 | 0.73 | — | 6676 | 842 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PD4 | 13330 | 2024-04-06 | 2021-08-04 | 4.9 | 4.13 | — | 7.8 | 0.005 | 0.87 | 0.0 | 0.05 | 14.59 | 0.00 | 2.035 | 38.59 | 0.00 | 11.7 | 88.3 | 0.0 | -4.80 | 0.73 | 0.72 | — | 7.8 | 0.005 | 0.84 | 0.0 | 0.05 | 13.74 | 0.00 | 2.064 | 24.98 | 0.00 | 6.5 | 93.5 | 0.0 | -0.78 | 1.47 | 0.73 | 0.74 | — | 6676 | 842 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Si7 | 25139 | 2023-11-15 | 2021-10-12 | 3.49 | 3.47 | — | 3.4 | 0.003 | 1.32 | 0.0 | 0.04 | 13.13 | 0.00 | 1.963 | 5.23 | 0.00 | 2.6 | 97.4 | 0.0 | 2.38 | 0.49 | 0.78 | 0.67 | 3.4 | 0.002 | 0.92 | 0.0 | 0.04 | 15.00 | 0.00 | 1.950 | 5.49 | 0.17 | 3.1 | 96.9 | 0.0 | 2.10 | 0.51 | 0.51 | 0.83 | 0.96 | 11287 | 728 | 1 | 0 | 2 | 0 | 5777 | logfile |
✔ | 7K10 | 22619 | 2024-01-19 | 2020-09-06 | 3.3 | 3.44 | — | 3.4 | 0.006 | 0.98 | 0.0 | 0.05 | 15.43 | 0.01 | 2.300 | 4.19 | 0.37 | 10.6 | 89.3 | 0.1 | -5.28 | 0.72 | 0.77 | 2.12 | 3.4 | 0.004 | 0.70 | 0.0 | 0.04 | 16.64 | 0.00 | 2.094 | 7.54 | 2.19 | 10.3 | 89.7 | 0.1 | -1.84 | 0.38 | 0.72 | 0.79 | 1.71 | 10037 | 1259 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K10 | 22619 | 2024-02-14 | 2020-09-06 | 3.3 | 3.44 | — | 3.4 | 0.006 | 0.98 | 0.0 | 0.05 | 15.43 | 0.01 | 2.300 | 4.19 | 0.37 | 10.6 | 89.3 | 0.1 | -5.28 | 0.72 | 0.77 | 2.12 | 3.4 | 0.004 | 0.70 | 0.0 | 0.04 | 16.64 | 0.00 | 2.094 | 7.54 | 2.19 | 10.3 | 89.7 | 0.1 | -1.84 | 0.38 | 0.72 | 0.79 | 1.71 | 10037 | 1259 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WBU | 32406 | 2023-12-10 | 2021-12-17 | 3.42 | 3.70 | — | 3.6 | 0.003 | 0.59 | 1.0 | 0.04 | 15.37 | 0.01 | 2.145 | 7.00 | 0.37 | 2.2 | 97.8 | 0.0 | 0.89 | 0.67 | 0.73 | 1.75 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 17.09 | 0.00 | 2.215 | 9.24 | 0.24 | 2.7 | 97.3 | 0.0 | 0.75 | 0.48 | 0.69 | 0.79 | 1.88 | 7170 | 898 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7WBU | 32406 | 2023-11-16 | 2021-12-17 | 3.42 | 3.70 | — | 3.6 | 0.003 | 0.59 | 1.0 | 0.04 | 15.37 | 0.01 | 2.145 | 7.00 | 0.37 | 2.2 | 97.8 | 0.0 | 0.89 | 0.67 | 0.73 | 1.75 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 17.09 | 0.00 | 2.215 | 9.24 | 0.24 | 2.7 | 97.3 | 0.0 | 0.75 | 0.48 | 0.69 | 0.79 | 1.88 | 7170 | 898 | 1 | 0 | 1 | 0 | 0 | logfile |