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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NAN | 24275 | 2024-02-24 | 2021-06-22 | 2.8 | 3.48 | — | 3.2 | 0.010 | 0.73 | 0.0 | 0.05 | 12.42 | 0.00 | 2.063 | 2.67 | 0.00 | 1.9 | 98.0 | 0.0 | -0.69 | 0.87 | 0.86 | 3.65 | 3.2 | 0.003 | 0.67 | 1.0 | 0.04 | 15.50 | 0.00 | 2.118 | 10.02 | 1.82 | 2.5 | 97.5 | 0.0 | 0.99 | 1.81 | 0.87 | 0.87 | 3.01 | 46360 | 6244 | 28 | 0 | 0 | 0 | 0 | logfile |
✘ | 7T92 | 25750 | 2023-12-12 | 2021-12-17 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18777 | 1159 | 8 | 0 | 25 | 0 | 9156 | logfile |
✔ | 7PF4 | 13367 | 2023-08-13 | 2021-08-11 | 4.0 | 4.72 | — | 3.7 | 0.005 | 0.89 | 0.0 | 0.05 | 29.84 | 0.01 | 2.258 | 6.44 | 0.00 | 2.4 | 97.6 | 0.0 | -0.80 | 0.87 | 0.76 | — | 3.7 | 0.005 | 0.75 | 0.0 | 0.04 | 30.41 | 0.00 | 2.132 | 25.99 | 0.79 | 4.7 | 95.3 | 0.0 | 0.52 | 0.80 | 0.88 | 0.79 | — | 12935 | 768 | 10 | 334 | 0 | 0 | 0 | logfile |
✘ | 7T92 | 25750 | 2023-07-10 | 2021-12-17 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18777 | 1159 | 8 | 0 | 25 | 0 | 9156 | logfile |
✔ | 7PF4 | 13367 | 2023-10-07 | 2021-08-11 | 4.0 | 4.72 | — | 3.7 | 0.005 | 0.89 | 0.0 | 0.05 | 29.84 | 0.01 | 2.258 | 6.44 | 0.00 | 2.4 | 97.6 | 0.0 | -0.80 | 0.87 | 0.76 | — | 3.7 | 0.005 | 0.72 | 0.0 | 0.04 | 30.31 | 0.00 | 2.126 | 22.45 | 0.47 | 4.1 | 95.9 | 0.0 | 0.72 | 0.77 | 0.88 | 0.79 | — | 12935 | 768 | 10 | 334 | 0 | 0 | 0 | logfile |
✔ | 8iBU | 35345 | 2024-03-14 | 2023-02-10 | 3.51 | 2.91 | 3.32 | 3.5 | 0.006 | 0.71 | 1.0 | 0.29 | 13.65 | 0.00 | 2.307 | 10.79 | 0.73 | 2.3 | 97.7 | 0.0 | -1.69 | 0.53 | 0.68 | 1.94 | 3.4 | 0.006 | 1.01 | 0.0 | 0.10 | 17.20 | 0.00 | 1.972 | 11.35 | 3.64 | 4.0 | 95.9 | 0.1 | 0.19 | 0.97 | 0.60 | 0.79 | 2.54 | 8903 | 1127 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7PF4 | 13367 | 2023-11-16 | 2021-08-11 | 4.0 | 4.72 | — | 3.7 | 0.005 | 0.89 | 0.0 | 0.05 | 29.84 | 0.01 | 2.258 | 6.44 | 0.00 | 2.4 | 97.6 | 0.0 | -0.80 | 0.87 | 0.76 | — | 3.7 | 0.005 | 0.72 | 0.0 | 0.04 | 30.31 | 0.00 | 2.126 | 22.45 | 0.47 | 4.1 | 95.9 | 0.0 | 0.72 | 0.77 | 0.88 | 0.79 | — | 12935 | 768 | 10 | 334 | 0 | 0 | 0 | logfile |
✘ | 7T92 | 25750 | 2023-08-16 | 2021-12-17 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18777 | 1159 | 8 | 0 | 25 | 0 | 9156 | logfile |
✔ | 7PF4 | 13367 | 2023-12-10 | 2021-08-11 | 4.0 | 4.72 | — | 3.7 | 0.005 | 0.89 | 0.0 | 0.05 | 29.72 | 0.01 | 2.258 | 6.44 | 0.00 | 2.4 | 97.6 | 0.0 | -0.80 | 0.87 | 0.76 | — | 3.7 | 0.008 | 0.83 | 0.0 | 0.04 | 30.20 | 0.01 | 2.076 | 34.21 | 1.26 | 5.1 | 94.9 | 0.0 | 0.14 | 0.83 | 0.88 | 0.80 | — | 12935 | 768 | 10 | 334 | 0 | 0 | 0 | logfile |
✔ | 7CBM | 30336 | 2023-07-15 | 2020-06-12 | 3.2 | 3.68 | — | 3.7 | 0.003 | 0.48 | 0.0 | 0.04 | 9.89 | 0.00 | 2.132 | 7.96 | 2.78 | 4.4 | 95.6 | 0.0 | 0.73 | 0.56 | 0.84 | 2.14 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 14.52 | 0.00 | 2.041 | 10.82 | 0.48 | 4.4 | 95.6 | 0.0 | 0.51 | 0.63 | 0.54 | 0.85 | 1.81 | 87698 | 11818 | 40 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NAN | 24275 | 2024-03-25 | 2021-06-22 | 2.8 | 3.48 | — | 3.2 | 0.010 | 0.73 | 0.0 | 0.05 | 12.42 | 0.00 | 2.063 | 2.67 | 0.00 | 1.9 | 98.0 | 0.0 | -0.69 | 0.87 | 0.86 | 3.65 | 3.2 | 0.003 | 0.67 | 1.0 | 0.04 | 15.50 | 0.00 | 2.118 | 10.02 | 1.82 | 2.5 | 97.5 | 0.0 | 0.99 | 1.81 | 0.87 | 0.87 | 3.01 | 46360 | 6244 | 28 | 0 | 0 | 0 | 0 | logfile |
✘ | 7T92 | 25750 | 2023-10-10 | 2021-12-17 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18777 | 1159 | 8 | 0 | 25 | 0 | 9156 | logfile |
✔ | 5LMR | 4077 | 2024-01-18 | 2016-08-01 | 4.45 | 4.71 | 4.60 | 4.4 | 0.008 | 1.39 | 20.0 | 0.12 | 25.99 | 0.02 | 1.426 | 17.92 | 16.73 | 8.7 | 88.5 | 2.8 | -2.16 | 0.79 | 0.74 | — | 4.4 | 0.003 | 0.75 | 0.0 | 0.04 | 23.48 | 0.01 | 2.024 | 28.97 | 0.05 | 7.5 | 91.9 | 0.6 | -1.66 | 1.61 | 0.84 | 0.85 | — | 55662 | 2628 | 29 | 1609 | 4 | 0 | 0 | logfile |
✔ | 6QWL | 4660 | 2024-02-14 | 2019-03-05 | 4.1 | 4.22 | — | 4.1 | 0.008 | 1.01 | 0.0 | 0.06 | 17.05 | 0.01 | 2.214 | 10.07 | 0.93 | 10.8 | 89.1 | 0.1 | -4.69 | 0.75 | 0.74 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 15.87 | 0.00 | 2.149 | 14.26 | 0.00 | 6.4 | 93.6 | 0.0 | -1.46 | 2.24 | 0.75 | 0.73 | — | 10408 | 1244 | 5 | 26 | 0 | 0 | 0 | logfile |
✔ | 5LMR | 4077 | 2024-02-13 | 2016-08-01 | 4.45 | 4.71 | 4.60 | 4.4 | 0.008 | 1.39 | 20.0 | 0.12 | 26.40 | 0.02 | 1.426 | 17.92 | 16.73 | 8.7 | 88.5 | 2.8 | -2.16 | 0.79 | 0.74 | — | 4.4 | 0.004 | 0.76 | 0.0 | 0.04 | 23.94 | 0.01 | 2.025 | 30.62 | 0.09 | 7.9 | 91.6 | 0.5 | -1.60 | 1.61 | 0.84 | 0.85 | — | 55662 | 2628 | 29 | 1609 | 4 | 0 | 0 | logfile |
✘ | 7T92 | 25750 | 2023-11-17 | 2021-12-17 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18777 | 1159 | 8 | 0 | 25 | 0 | 9156 | logfile |
✔ | 5LMR | 4077 | 2024-03-11 | 2016-08-01 | 4.45 | 4.71 | 4.60 | 4.4 | 0.008 | 1.39 | 20.0 | 0.12 | 26.40 | 0.02 | 1.426 | 17.92 | 16.73 | 8.7 | 88.5 | 2.8 | -2.16 | 0.79 | 0.74 | — | 4.4 | 0.004 | 0.76 | 0.0 | 0.04 | 23.94 | 0.01 | 2.025 | 30.62 | 0.09 | 7.9 | 91.6 | 0.5 | -1.60 | 1.61 | 0.84 | 0.85 | — | 55662 | 2628 | 29 | 1609 | 4 | 0 | 0 | logfile |
✘ | 7MSX | 23971 | 2024-02-13 | 2021-05-12 | 3.15 | 3.24 | 3.04 | 3.2 | 0.008 | 0.62 | 0.0 | 0.05 | 10.30 | 0.00 | 2.385 | 0.81 | 0.00 | 1.9 | 98.1 | 0.0 | 0.06 | 0.77 | 0.85 | 3.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3706 | 473 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 5LMR | 4077 | 2024-04-06 | 2016-08-01 | 4.45 | 4.71 | 4.60 | 4.4 | 0.008 | 1.39 | 20.0 | 0.12 | 26.39 | 0.01 | 1.426 | 17.92 | 16.73 | 8.7 | 88.5 | 2.8 | -2.16 | 0.79 | 0.74 | — | 4.4 | 0.004 | 0.73 | 0.0 | 0.04 | 23.96 | 0.01 | 2.016 | 29.80 | 0.05 | 8.1 | 91.4 | 0.5 | -1.71 | 1.61 | 0.84 | 0.85 | — | 55662 | 2628 | 29 | 1609 | 4 | 0 | 0 | logfile |
✘ | 8GVC | 34290 | 2023-10-03 | 2022-09-14 | 2.89 | 3.10 | 2.90 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 14.66 | 0.00 | 1.670 | 13.40 | 1.14 | 2.0 | 97.8 | 0.2 | 2.06 | 0.64 | 0.82 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8080 | 1022 | 4 | 0 | 2 | 0 | 0 | logfile |