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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6XLF | 22242 | 2024-03-16 | 2020-06-28 | 3.15 | 3.29 | — | 3.2 | 0.003 | 0.47 | 0.0 | 0.04 | 12.83 | 0.00 | 2.115 | 6.23 | 1.20 | 1.6 | 98.4 | 0.0 | -4.12 | 0.75 | 0.79 | 2.37 | 3.2 | 0.004 | 0.58 | 0.0 | 0.04 | 16.11 | 0.00 | 1.901 | 10.67 | 2.33 | 3.2 | 96.8 | 0.0 | -0.75 | 2.49 | 0.78 | 0.85 | 2.96 | 13653 | 1680 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6XLF | 22242 | 2024-04-08 | 2020-06-28 | 3.15 | 3.29 | — | 3.2 | 0.003 | 0.47 | 0.0 | 0.04 | 12.83 | 0.00 | 2.115 | 6.23 | 1.20 | 1.6 | 98.4 | 0.0 | -4.12 | 0.75 | 0.79 | 2.37 | 3.2 | 0.004 | 0.58 | 0.0 | 0.04 | 16.11 | 0.00 | 1.901 | 10.67 | 2.33 | 3.2 | 96.8 | 0.0 | -0.75 | 2.49 | 0.78 | 0.85 | 2.96 | 13653 | 1680 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6WB1 | 21584 | 2024-02-14 | 2020-03-26 | 4.7 | 4.87 | — | 4.6 | 0.002 | 0.50 | 0.0 | 0.04 | 17.21 | 0.00 | 2.204 | 7.21 | 0.55 | 4.5 | 95.4 | 0.1 | -4.82 | 0.86 | 0.80 | — | 4.6 | 0.003 | 0.61 | 0.0 | 0.04 | 17.45 | 0.00 | 2.158 | 10.78 | 0.00 | 4.9 | 95.1 | 0.0 | -0.78 | 0.75 | 0.88 | 0.84 | — | 8235 | 944 | 4 | 75 | 0 | 0 | 0 | logfile |
✔ | 6XLF | 22242 | 2023-10-06 | 2020-06-28 | 3.15 | 3.29 | — | 3.2 | 0.003 | 0.47 | 0.0 | 0.04 | 12.70 | 0.00 | 2.115 | 6.23 | 1.20 | 1.6 | 98.4 | 0.0 | -4.12 | 0.75 | 0.79 | 2.37 | 3.2 | 0.002 | 0.54 | 0.0 | 0.04 | 15.92 | 0.00 | 1.975 | 9.75 | 0.33 | 2.5 | 97.5 | 0.0 | -0.64 | 2.49 | 0.78 | 0.85 | 2.67 | 13653 | 1680 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6XLF | 22242 | 2023-12-10 | 2020-06-28 | 3.15 | 3.29 | — | 3.2 | 0.003 | 0.47 | 0.0 | 0.04 | 12.83 | 0.00 | 2.115 | 6.23 | 1.20 | 1.6 | 98.4 | 0.0 | -4.12 | 0.75 | 0.79 | 2.37 | 3.2 | 0.002 | 0.54 | 0.0 | 0.04 | 15.93 | 0.00 | 1.961 | 9.71 | 0.20 | 2.8 | 97.2 | 0.0 | -0.51 | 2.49 | 0.78 | 0.84 | 2.58 | 13653 | 1680 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 5BKF | 9403 | 2024-01-20 | 2021-03-19 | 3.6 | 3.87 | — | 4.0 | 0.004 | 0.54 | 0.0 | 0.04 | 14.14 | 0.00 | 2.015 | 7.17 | 0.35 | 6.2 | 93.8 | 0.0 | -3.64 | 0.66 | 0.81 | 2.57 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 15.72 | 0.00 | 2.218 | 11.72 | 2.70 | 3.3 | 96.7 | 0.0 | -0.20 | 1.30 | 0.67 | 0.83 | 2.39 | 13470 | 1694 | 10 | 0 | 9 | 0 | 0 | logfile |
✔ | 7JY9 | 22525 | 2023-10-18 | 2020-08-29 | 2.7 | 2.85 | — | 2.8 | 0.014 | 1.92 | 1.0 | 0.09 | 20.43 | 0.00 | 2.145 | 0.79 | 5.31 | 3.0 | 96.7 | 0.3 | -2.59 | 0.60 | 0.68 | 2.73 | 2.8 | 0.004 | 0.61 | 0.0 | 0.04 | 20.99 | 0.00 | 1.767 | 4.15 | 2.23 | 2.4 | 97.6 | 0.0 | 0.58 | 0.82 | 0.67 | 0.79 | 2.70 | 49032 | 2964 | 21 | 111 | 18 | 0 | 24183 | logfile |
✔ | 5BKF | 9403 | 2023-08-13 | 2021-03-19 | 3.6 | 3.87 | — | 4.0 | 0.004 | 0.54 | 0.0 | 0.04 | 13.37 | 0.00 | 2.015 | 7.17 | 0.35 | 6.2 | 93.8 | 0.0 | -3.64 | 0.66 | 0.81 | 2.57 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 16.00 | 0.00 | 2.234 | 11.94 | 0.42 | 3.6 | 96.4 | 0.0 | -0.31 | 1.34 | 0.66 | 0.83 | 2.29 | 13470 | 1694 | 10 | 0 | 9 | 0 | 0 | logfile |
✔ | 5BKF | 9403 | 2023-11-15 | 2021-03-19 | 3.6 | 3.87 | — | 4.0 | 0.004 | 0.54 | 0.0 | 0.04 | 13.37 | 0.00 | 2.015 | 7.17 | 0.35 | 6.2 | 93.8 | 0.0 | -3.64 | 0.66 | 0.81 | 2.57 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 16.00 | 0.00 | 2.234 | 11.94 | 0.42 | 3.6 | 96.4 | 0.0 | -0.31 | 1.34 | 0.66 | 0.83 | 2.29 | 13470 | 1694 | 10 | 0 | 9 | 0 | 0 | logfile |
✔ | 5BKF | 9403 | 2023-12-10 | 2021-03-19 | 3.6 | 3.87 | — | 4.0 | 0.004 | 0.54 | 0.0 | 0.04 | 14.14 | 0.00 | 2.015 | 7.17 | 0.35 | 6.2 | 93.8 | 0.0 | -3.64 | 0.66 | 0.81 | 2.57 | 3.9 | 0.003 | 0.68 | 0.0 | 0.04 | 15.74 | 0.00 | 2.228 | 11.64 | 0.28 | 3.2 | 96.8 | 0.0 | -0.15 | 1.32 | 0.67 | 0.82 | 2.15 | 13470 | 1694 | 10 | 0 | 9 | 0 | 0 | logfile |
✔ | 7VND | 32039 | 2023-07-14 | 2021-10-10 | 3.6 | 3.59 | — | 3.5 | 0.009 | 0.75 | 0.0 | 0.05 | 14.15 | 0.00 | 2.170 | 9.07 | 0.00 | 8.1 | 91.9 | 0.0 | -2.53 | 0.64 | 0.73 | 2.08 | 3.5 | 0.004 | 0.67 | 0.0 | 0.05 | 15.81 | 0.00 | 2.097 | 10.15 | 0.23 | 8.2 | 91.8 | 0.0 | -1.90 | 0.43 | 0.67 | 0.79 | 1.80 | 27632 | 3442 | 24 | 0 | 52 | 0 | 0 | logfile |
✔ | 7WVU | 32858 | 2024-03-11 | 2022-02-11 | 3.3 | 3.40 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.04 | 13.25 | 0.00 | 2.221 | 8.52 | 0.00 | 2.3 | 97.7 | 0.0 | 0.98 | 0.58 | 0.72 | 1.55 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 15.25 | 0.00 | 2.222 | 10.37 | 4.27 | 3.1 | 96.9 | 0.0 | 0.68 | 0.41 | 0.61 | 0.78 | 2.02 | 6862 | 909 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WVU | 32858 | 2023-07-04 | 2022-02-11 | 3.3 | 3.40 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.04 | 13.25 | 0.00 | 2.221 | 8.52 | 0.00 | 2.3 | 97.7 | 0.0 | 0.98 | 0.58 | 0.72 | 1.55 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 15.27 | 0.00 | 2.230 | 11.78 | 0.14 | 3.2 | 96.8 | 0.0 | 0.55 | 1.14 | 0.61 | 0.78 | 2.12 | 6862 | 909 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VND | 32039 | 2023-10-15 | 2021-10-10 | 3.6 | 3.59 | — | 3.5 | 0.009 | 0.75 | 0.0 | 0.05 | 14.15 | 0.00 | 2.170 | 9.07 | 0.00 | 8.1 | 91.9 | 0.0 | -2.53 | 0.64 | 0.73 | 2.08 | 3.5 | 0.004 | 0.67 | 0.0 | 0.05 | 15.81 | 0.00 | 2.097 | 10.15 | 0.23 | 8.2 | 91.8 | 0.0 | -1.90 | 0.43 | 0.67 | 0.79 | 1.80 | 27632 | 3442 | 24 | 0 | 52 | 0 | 0 | logfile |
✔ | 7JY9 | 22525 | 2023-07-17 | 2020-08-29 | 2.7 | 2.85 | — | 2.8 | 0.014 | 1.92 | 1.0 | 0.09 | 20.43 | 0.00 | 2.145 | 0.79 | 5.31 | 3.0 | 96.7 | 0.3 | -2.59 | 0.60 | 0.68 | 2.73 | 2.8 | 0.003 | 0.58 | 0.0 | 0.04 | 21.02 | 0.00 | 1.805 | 4.07 | 2.19 | 2.2 | 97.8 | 0.0 | 0.62 | 0.82 | 0.68 | 0.79 | 2.67 | 49032 | 2964 | 21 | 111 | 18 | 0 | 24183 | logfile |
✔ | 7WVU | 32858 | 2023-11-14 | 2022-02-11 | 3.3 | 3.40 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.04 | 13.25 | 0.00 | 2.221 | 8.52 | 0.00 | 2.3 | 97.7 | 0.0 | 0.98 | 0.58 | 0.72 | 1.55 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 15.27 | 0.00 | 2.230 | 11.78 | 0.14 | 3.2 | 96.8 | 0.0 | 0.55 | 1.14 | 0.61 | 0.78 | 2.12 | 6862 | 909 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WB1 | 21584 | 2024-01-18 | 2020-03-26 | 4.7 | 4.87 | — | 4.6 | 0.002 | 0.50 | 0.0 | 0.04 | 16.71 | 0.00 | 2.204 | 7.21 | 0.55 | 4.5 | 95.4 | 0.1 | -4.82 | 0.86 | 0.80 | — | 4.6 | 0.003 | 0.60 | 0.0 | 0.04 | 16.89 | 0.00 | 2.163 | 9.63 | 0.00 | 3.5 | 96.5 | 0.0 | -0.60 | 0.72 | 0.88 | 0.83 | — | 8235 | 944 | 4 | 75 | 0 | 0 | 0 | logfile |
✔ | 6XLD | 22240 | 2024-01-19 | 2020-06-28 | 3.66 | 3.78 | — | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 10.19 | 0.00 | 2.061 | 5.73 | 0.58 | 1.5 | 98.5 | 0.0 | -3.76 | 0.77 | 0.75 | 1.85 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 14.83 | 0.00 | 1.890 | 11.95 | 1.74 | 3.5 | 96.5 | 0.0 | -0.31 | 1.42 | 0.80 | 0.81 | 2.50 | 10992 | 1349 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 6XLD | 22240 | 2023-11-15 | 2020-06-28 | 3.66 | 3.78 | — | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 9.94 | 0.00 | 2.061 | 5.73 | 0.58 | 1.5 | 98.5 | 0.0 | -3.76 | 0.77 | 0.75 | 1.85 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 14.73 | 0.00 | 1.891 | 11.72 | 0.50 | 3.5 | 96.5 | 0.0 | -0.41 | 1.41 | 0.80 | 0.81 | 2.54 | 10992 | 1349 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 6XLD | 22240 | 2023-10-05 | 2020-06-28 | 3.66 | 3.78 | — | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 9.94 | 0.00 | 2.061 | 5.73 | 0.58 | 1.5 | 98.5 | 0.0 | -3.76 | 0.77 | 0.75 | 1.85 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 14.73 | 0.00 | 1.891 | 11.72 | 0.50 | 3.5 | 96.5 | 0.0 | -0.41 | 1.41 | 0.80 | 0.81 | 2.54 | 10992 | 1349 | 5 | 0 | 4 | 0 | 0 | logfile |