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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NCA | 12264 | 2024-03-15 | 2021-01-28 | 3.47 | 3.58 | 3.04 | 3.6 | 0.012 | 2.04 | 0.0 | 0.08 | 10.64 | 0.01 | 2.645 | 0.00 | 0.19 | 5.5 | 94.5 | 0.0 | -2.04 | 0.73 | 0.85 | 4.45 | 3.7 | 0.002 | 0.51 | 0.0 | 0.05 | 13.24 | 0.00 | 2.471 | 0.86 | 1.74 | 3.7 | 96.3 | 0.0 | -2.97 | 0.75 | 0.69 | 0.84 | 3.63 | 10428 | 732 | 12 | 0 | 0 | 0 | 5376 | logfile |
✔ | 7TT5 | 26111 | 2024-01-20 | 2022-01-31 | 4.3 | 4.48 | — | 4.4 | 0.004 | 0.69 | 0.0 | 0.04 | 10.02 | 0.01 | 2.033 | 4.14 | 0.00 | 0.9 | 99.1 | 0.0 | 1.26 | 0.65 | 0.70 | — | 4.4 | 0.002 | 0.54 | 0.0 | 0.04 | 11.97 | 0.00 | 1.899 | 7.58 | 0.13 | 1.7 | 98.3 | 0.0 | 0.80 | 1.20 | 0.68 | 0.76 | — | 14255 | 928 | 5 | 0 | 0 | 0 | 6938 | logfile |
✔ | 7NCA | 12264 | 2024-04-07 | 2021-01-28 | 3.47 | 3.58 | 3.04 | 3.6 | 0.012 | 2.04 | 0.0 | 0.08 | 10.64 | 0.01 | 2.645 | 0.00 | 0.19 | 5.5 | 94.5 | 0.0 | -2.04 | 0.73 | 0.85 | 4.45 | 3.7 | 0.002 | 0.51 | 0.0 | 0.05 | 13.24 | 0.00 | 2.471 | 0.86 | 1.74 | 3.7 | 96.3 | 0.0 | -2.97 | 0.75 | 0.69 | 0.84 | 3.63 | 10428 | 732 | 12 | 0 | 0 | 0 | 5376 | logfile |
✔ | 6oFG | 20045 | 2024-01-19 | 2019-03-29 | 2.9 | 3.01 | — | 3.0 | 0.008 | 0.75 | 0.0 | 0.04 | 10.04 | 0.01 | 2.263 | 5.31 | 0.00 | 3.9 | 96.1 | 0.0 | -6.09 | 0.65 | 0.85 | 4.64 | 3.0 | 0.002 | 0.52 | 0.0 | 0.03 | 14.16 | 0.00 | 2.133 | 7.52 | 4.02 | 3.4 | 96.6 | 0.0 | 5.02 | 0.52 | 0.66 | 0.87 | 3.09 | 10980 | 1404 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NCA | 12264 | 2023-08-11 | 2021-01-28 | 3.47 | 3.58 | 3.04 | 3.6 | 0.012 | 2.04 | 0.0 | 0.08 | 10.64 | 0.01 | 2.645 | 0.00 | 0.19 | 5.5 | 94.5 | 0.0 | -2.04 | 0.73 | 0.85 | 4.45 | 3.7 | 0.002 | 0.49 | 0.0 | 0.05 | 12.94 | 0.00 | 2.433 | 0.77 | 0.39 | 2.7 | 97.3 | 0.0 | -2.96 | 0.76 | 0.69 | 0.85 | 3.43 | 10428 | 732 | 12 | 0 | 0 | 0 | 5376 | logfile |
✔ | 8ioS | 35622 | 2023-12-13 | 2023-03-13 | 2.5 | 3.18 | 2.60 | 3.1 | 0.003 | 0.54 | 0.0 | 0.05 | 12.91 | 0.00 | 2.195 | 4.04 | 0.00 | 2.9 | 97.1 | 0.0 | 0.45 | 0.83 | 0.87 | 3.69 | 3.1 | 0.002 | 0.52 | 0.0 | 0.05 | 13.67 | 0.00 | 2.181 | 4.61 | 0.65 | 3.0 | 97.0 | 0.0 | 0.57 | 0.25 | 0.80 | 0.85 | 3.49 | 25695 | 3189 | 15 | 0 | 54 | 0 | 0 | logfile |
✔ | 7NCA | 12264 | 2023-09-30 | 2021-01-28 | 3.47 | 3.58 | 3.04 | 3.6 | 0.012 | 2.04 | 0.0 | 0.08 | 10.64 | 0.01 | 2.645 | 0.00 | 0.19 | 5.5 | 94.5 | 0.0 | -2.04 | 0.73 | 0.85 | 4.45 | 3.7 | 0.002 | 0.49 | 0.0 | 0.05 | 12.94 | 0.00 | 2.433 | 0.77 | 0.39 | 2.7 | 97.3 | 0.0 | -2.96 | 0.76 | 0.69 | 0.85 | 3.43 | 10428 | 732 | 12 | 0 | 0 | 0 | 5376 | logfile |
✔ | 6G1S | 4340 | 2024-02-14 | 2018-03-21 | 3.93 | 4.13 | 3.54 | 4.0 | 0.008 | 0.89 | 0.0 | 0.05 | 13.70 | 0.00 | 2.015 | 12.38 | 0.00 | 12.7 | 87.3 | 0.0 | -4.00 | 0.62 | 0.78 | 1.56 | 4.0 | 0.002 | 0.64 | 0.0 | 0.04 | 16.77 | 0.00 | 1.995 | 25.28 | 1.58 | 9.8 | 90.2 | 0.0 | 0.24 | 1.85 | 0.62 | 0.78 | 1.99 | 9891 | 645 | 4 | 30 | 1 | 0 | 4096 | logfile |
✔ | 7NCA | 12264 | 2023-10-05 | 2021-01-28 | 3.47 | 3.58 | 3.04 | 3.6 | 0.012 | 2.04 | 0.0 | 0.08 | 10.64 | 0.01 | 2.645 | 0.00 | 0.19 | 5.5 | 94.5 | 0.0 | -2.04 | 0.73 | 0.85 | 4.45 | 3.7 | 0.002 | 0.49 | 0.0 | 0.05 | 12.94 | 0.00 | 2.433 | 0.77 | 0.39 | 2.7 | 97.3 | 0.0 | -2.96 | 0.76 | 0.69 | 0.85 | 3.43 | 10428 | 732 | 12 | 0 | 0 | 0 | 5376 | logfile |
✔ | 6G1S | 4340 | 2023-12-09 | 2018-03-21 | 3.93 | 4.13 | 3.54 | 4.0 | 0.008 | 0.89 | 0.0 | 0.05 | 13.16 | 0.00 | 2.015 | 12.38 | 0.00 | 12.7 | 87.3 | 0.0 | -4.00 | 0.62 | 0.78 | 1.56 | 4.0 | 0.002 | 0.64 | 0.0 | 0.04 | 16.52 | 0.00 | 2.016 | 24.58 | 0.18 | 9.2 | 90.8 | 0.0 | 0.42 | 1.86 | 0.62 | 0.77 | 1.99 | 9891 | 645 | 4 | 30 | 1 | 0 | 4096 | logfile |
✔ | 7NCA | 12264 | 2023-11-15 | 2021-01-28 | 3.47 | 3.58 | 3.04 | 3.6 | 0.012 | 2.04 | 0.0 | 0.08 | 10.64 | 0.01 | 2.645 | 0.00 | 0.19 | 5.5 | 94.5 | 0.0 | -2.04 | 0.73 | 0.85 | 4.45 | 3.7 | 0.002 | 0.49 | 0.0 | 0.05 | 12.94 | 0.00 | 2.433 | 0.77 | 0.39 | 2.7 | 97.3 | 0.0 | -2.96 | 0.76 | 0.69 | 0.85 | 3.43 | 10428 | 732 | 12 | 0 | 0 | 0 | 5376 | logfile |
✔ | 6oFG | 20045 | 2024-03-15 | 2019-03-29 | 2.9 | 3.01 | — | 3.0 | 0.008 | 0.75 | 0.0 | 0.04 | 10.04 | 0.01 | 2.263 | 5.31 | 0.00 | 3.9 | 96.1 | 0.0 | -6.09 | 0.65 | 0.85 | 4.64 | 3.0 | 0.002 | 0.52 | 0.0 | 0.03 | 14.16 | 0.00 | 2.133 | 7.52 | 4.02 | 3.4 | 96.6 | 0.0 | 5.02 | 0.52 | 0.66 | 0.87 | 3.09 | 10980 | 1404 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BX7 | 30235 | 2024-01-17 | 2020-04-17 | 2.8 | 2.94 | — | 2.9 | 0.009 | 0.84 | 0.0 | 0.04 | 12.96 | 0.00 | 2.228 | 15.34 | 0.00 | 9.3 | 90.7 | 0.0 | -5.83 | 0.40 | 0.79 | 6.36 | 2.9 | 0.002 | 0.50 | 0.0 | 0.04 | 13.82 | 0.00 | 2.184 | 8.97 | 1.15 | 7.0 | 93.0 | 0.0 | -5.39 | 0.52 | 0.40 | 0.77 | 5.28 | 1896 | 270 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NCA | 12264 | 2023-12-09 | 2021-01-28 | 3.47 | 3.58 | 3.04 | 3.6 | 0.012 | 2.04 | 0.0 | 0.08 | 10.64 | 0.01 | 2.645 | 0.00 | 0.19 | 5.5 | 94.5 | 0.0 | -2.04 | 0.73 | 0.85 | 4.45 | 3.7 | 0.002 | 0.50 | 0.0 | 0.05 | 12.98 | 0.00 | 2.422 | 0.77 | 0.00 | 3.8 | 96.2 | 0.0 | -3.03 | 0.76 | 0.70 | 0.85 | 3.63 | 10428 | 732 | 12 | 0 | 0 | 0 | 5376 | logfile |
✔ | 7BX7 | 30235 | 2024-02-13 | 2020-04-17 | 2.8 | 2.94 | — | 2.9 | 0.009 | 0.84 | 0.0 | 0.04 | 12.96 | 0.00 | 2.228 | 15.34 | 0.00 | 9.3 | 90.7 | 0.0 | -5.83 | 0.40 | 0.79 | 6.36 | 2.9 | 0.002 | 0.50 | 0.0 | 0.04 | 13.82 | 0.00 | 2.184 | 8.97 | 1.15 | 7.0 | 93.0 | 0.0 | -5.39 | 0.52 | 0.40 | 0.77 | 5.28 | 1896 | 270 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BX7 | 30235 | 2024-03-10 | 2020-04-17 | 2.8 | 2.94 | — | 2.9 | 0.009 | 0.84 | 0.0 | 0.04 | 12.96 | 0.00 | 2.228 | 15.34 | 0.00 | 9.3 | 90.7 | 0.0 | -5.83 | 0.40 | 0.79 | 6.36 | 2.9 | 0.002 | 0.50 | 0.0 | 0.04 | 13.82 | 0.00 | 2.184 | 8.97 | 1.15 | 7.0 | 93.0 | 0.0 | -5.39 | 0.52 | 0.40 | 0.77 | 5.28 | 1896 | 270 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BX7 | 30235 | 2024-04-05 | 2020-04-17 | 2.8 | 2.94 | — | 2.9 | 0.009 | 0.84 | 0.0 | 0.04 | 12.96 | 0.00 | 2.228 | 15.34 | 0.00 | 9.3 | 90.7 | 0.0 | -5.83 | 0.40 | 0.79 | 6.36 | 2.9 | 0.002 | 0.50 | 0.0 | 0.04 | 13.82 | 0.00 | 2.184 | 8.97 | 1.15 | 7.0 | 93.0 | 0.0 | -5.39 | 0.52 | 0.40 | 0.77 | 5.28 | 1896 | 270 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6G1S | 4340 | 2023-08-11 | 2018-03-21 | 3.93 | 4.13 | 3.54 | 4.0 | 0.008 | 0.89 | 0.0 | 0.05 | 9.81 | 0.00 | 2.015 | 12.38 | 0.00 | 12.7 | 87.3 | 0.0 | -4.00 | 0.62 | 0.78 | 1.56 | 4.0 | 0.002 | 0.64 | 0.0 | 0.04 | 13.99 | 0.00 | 2.019 | 25.19 | 0.53 | 9.0 | 91.0 | 0.0 | 0.37 | 1.86 | 0.62 | 0.78 | 2.19 | 9891 | 645 | 4 | 30 | 1 | 0 | 4096 | logfile |
✔ | 6D03 | 7783 | 2023-12-13 | 2018-04-10 | 3.68 | 3.89 | — | 3.8 | 0.009 | 1.19 | 2.0 | 0.07 | 13.13 | 0.01 | 1.960 | 4.27 | 1.12 | 5.3 | 94.6 | 0.1 | -3.65 | 0.85 | 0.85 | 3.19 | 3.8 | 0.002 | 0.62 | 0.0 | 0.06 | 14.55 | 0.00 | 2.024 | 6.71 | 0.04 | 3.7 | 96.3 | 0.0 | 0.19 | 1.49 | 0.85 | 0.85 | 1.71 | 24844 | 3106 | 15 | 0 | 26 | 0 | 0 | logfile |
✔ | 6LN8 | 0927 | 2024-04-06 | 2019-12-28 | 3.1 | 3.26 | 3.33 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 12.81 | 0.00 | 2.051 | 6.74 | 0.00 | 3.0 | 97.0 | 0.0 | -2.71 | 0.70 | 0.80 | 2.37 | 3.3 | 0.002 | 0.50 | 0.0 | 0.04 | 15.20 | 0.00 | 1.385 | 8.28 | 2.58 | 2.5 | 97.5 | 0.0 | 0.26 | 0.44 | 0.69 | 0.82 | 1.79 | 7739 | 1003 | 1 | 0 | 2 | 0 | 0 | logfile |